Wall clock time and date at job start Tue Mar 31 2020 00:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46837 * 2 1 4 4 H 1.09004 * 109.46825 * 305.34855 * 3 2 1 5 5 C 1.50703 * 109.46979 * 185.35727 * 3 2 1 6 6 H 1.07997 * 120.00049 * 239.99913 * 5 3 2 7 7 C 1.37876 * 120.00060 * 59.99487 * 5 3 2 8 8 N 1.31518 * 120.00069 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99956 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47436 * 89.99832 * 9 7 5 11 11 H 1.48498 * 109.47178 * 210.00142 * 9 7 5 12 12 H 1.48499 * 109.46941 * 330.00142 * 9 7 5 13 13 N 1.46500 * 109.47513 * 65.35442 * 3 2 1 14 14 S 1.65601 * 119.99955 * 240.13880 * 13 3 2 15 15 O 1.42094 * 106.40273 * 49.07281 * 14 13 3 16 16 O 1.42094 * 106.40008 * 181.99322 * 14 13 3 17 17 N 1.65604 * 107.21425 * 295.53418 * 14 13 3 18 18 C 1.47154 * 120.97820 * 275.24419 * 17 14 13 19 19 C 1.53713 * 108.16100 * 129.43575 * 18 17 14 20 20 O 1.42968 * 109.14568 * 52.53382 * 19 18 17 21 21 C 1.42960 * 114.17055 * 297.29087 * 20 19 18 22 22 C 1.47153 * 120.98352 * 95.52976 * 17 14 13 23 23 H 1.09004 * 109.46953 * 178.13557 * 1 2 3 24 24 H 1.08994 * 109.47552 * 298.14138 * 1 2 3 25 25 H 1.09000 * 109.47079 * 58.14571 * 1 2 3 26 26 H 1.09004 * 109.46798 * 119.99362 * 2 1 3 27 27 H 1.08998 * 109.47107 * 239.99998 * 2 1 3 28 28 H 0.96998 * 119.99535 * 179.97438 * 8 7 5 29 29 H 0.96995 * 119.99456 * 60.13498 * 13 3 2 30 30 H 1.09004 * 109.67856 * 249.21045 * 18 17 14 31 31 H 1.08999 * 109.68279 * 9.76755 * 18 17 14 32 32 H 1.08999 * 109.65533 * 292.57148 * 19 18 17 33 33 H 1.08997 * 109.48402 * 172.39350 * 19 18 17 34 34 H 1.09006 * 109.50755 * 302.65996 * 21 20 19 35 35 H 1.08991 * 109.55741 * 182.53421 * 21 20 19 36 36 H 1.09004 * 109.67910 * 350.23092 * 22 17 14 37 37 H 1.09000 * 109.67962 * 110.74528 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6005 1.9832 -0.8383 5 6 3.5412 1.4446 -0.1327 6 1 4.1510 1.8876 0.6408 7 6 4.1361 0.8810 -1.2414 8 7 3.3935 0.3410 -2.1831 9 14 5.9968 0.8830 -1.4055 10 1 6.5494 -0.3502 -0.7898 11 1 6.3670 0.9273 -2.8429 12 1 6.5534 2.0735 -0.7141 13 7 1.6598 2.0950 1.2554 14 16 0.6970 3.4422 1.2298 15 8 -0.4055 3.1316 0.3890 16 8 0.5513 3.8568 2.5811 17 7 1.5478 4.6381 0.4628 18 6 2.5064 5.4773 1.1992 19 6 3.8346 5.4791 0.4255 20 8 3.5849 5.8447 -0.9339 21 6 2.7429 4.9307 -1.6406 22 6 1.3629 4.8971 -0.9739 23 1 -0.3633 -1.0272 -0.0334 24 1 -0.3634 0.4847 0.9061 25 1 -0.3633 0.5424 -0.8729 26 1 1.8934 -0.5138 0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 3.8121 -0.0552 -2.9632 29 1 1.9719 1.7378 2.1014 30 1 2.1213 6.4942 1.2753 31 1 2.6621 5.0675 2.1972 32 1 4.2799 4.4848 0.4592 33 1 4.5172 6.1992 0.8767 34 1 3.1843 3.9344 -1.6143 35 1 2.6393 5.2558 -2.6757 36 1 0.7611 4.1029 -1.4156 37 1 0.8640 5.8562 -1.1128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:14 Heat of formation + Delta-G solvation = -127.581401 kcal Electronic energy + Delta-G solvation = -22040.022224 eV Core-core repulsion = 18751.056483 eV Total energy + Delta-G solvation = -3288.965740 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.79154 -36.81717 -35.89029 -35.31464 -34.40983 -32.28260 -31.04941 -30.54864 -26.71704 -26.65993 -23.89421 -23.05145 -21.13561 -20.15947 -18.82605 -17.74707 -17.05848 -16.45275 -16.01930 -15.39298 -15.04846 -14.93180 -14.70123 -14.26197 -13.89420 -13.65763 -13.13911 -12.94814 -12.31702 -11.86478 -11.77070 -11.73408 -11.68133 -11.49783 -11.30658 -11.28598 -11.03075 -10.98533 -10.87925 -10.41120 -10.12827 -10.04304 -9.99166 -9.73202 -9.48601 -8.58673 -8.50166 -8.26426 -6.20072 -4.29493 1.19028 3.18257 3.26778 3.27250 3.39471 4.14429 4.16823 4.27994 4.82971 5.04559 5.09128 5.14099 5.45085 5.47547 5.56822 5.69533 5.83038 5.90944 6.12866 6.20530 6.29062 6.34159 6.36921 6.42815 6.62592 6.77978 6.88388 7.06738 7.20938 7.45586 7.54854 7.61782 7.82841 7.96138 8.20795 8.74533 9.37602 10.83566 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.010462 C = 0.007369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.669578 B = 2675.677458 C = 3798.573360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.283 3.717 4 H 0.044 0.956 5 C -0.528 4.528 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -1.111 6.111 14 S 2.785 3.215 15 O -0.981 6.981 16 O -1.003 7.003 17 N -1.005 6.005 18 C 0.097 3.903 19 C 0.046 3.954 20 O -0.384 6.384 21 C 0.042 3.958 22 C 0.094 3.906 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.103 0.897 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 6.796 2.751 7.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C 0.179 3.821 4 H 0.062 0.938 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.873 5.873 14 S 2.794 3.206 15 O -0.964 6.964 16 O -0.987 6.987 17 N -0.845 5.845 18 C -0.029 4.029 19 C -0.032 4.032 20 O -0.302 6.302 21 C -0.036 4.036 22 C -0.032 4.032 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.237 0.763 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.587 7.029 2.646 7.677 hybrid contribution 1.449 -0.531 0.191 1.555 sum -0.137 6.498 2.837 7.092 Atomic orbital electron populations 1.21803 0.98597 0.99103 1.00767 1.21911 0.92373 0.99690 1.02818 1.18508 0.94666 0.90094 0.78876 0.93846 1.21418 0.91181 1.38556 1.05575 0.92044 1.24902 0.98166 0.94886 0.95636 1.69860 1.35002 1.37859 1.09428 0.86592 0.85475 0.78547 0.77396 1.20653 1.21114 1.19838 1.55890 1.70627 1.44520 1.16230 1.01716 0.73904 0.72691 0.72328 1.93582 1.49901 1.83766 1.69196 1.93538 1.86592 1.82529 1.36069 1.58151 1.57938 1.50209 1.18195 1.22000 0.89906 0.95630 0.95382 1.23021 0.95483 1.02007 0.82704 1.87848 1.68970 1.49801 1.23588 1.23050 0.89716 0.95714 0.95111 1.22000 0.98583 1.02553 0.80031 0.94854 0.94648 0.93113 0.94422 0.87915 0.92521 0.76323 0.91123 0.89227 0.91186 0.88741 0.89849 0.88571 0.88253 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.59 37.16 0.36 -2.60 16 2 C -0.13 -2.84 5.45 -26.73 -0.15 -2.98 16 3 C 0.28 6.26 2.30 -69.08 -0.16 6.11 16 4 H 0.04 1.04 7.50 -51.93 -0.39 0.65 16 5 C -0.53 -12.48 8.84 -34.44 -0.30 -12.78 16 6 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 7 C 0.07 1.65 5.29 -17.82 -0.09 1.55 16 8 N -0.88 -22.49 11.29 55.43 0.63 -21.87 16 9 Si 0.89 19.45 29.54 -169.99 -5.02 14.43 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 N -1.11 -21.40 4.93 -5.88 -0.03 -21.43 16 14 S 2.79 52.63 6.00 -107.50 -0.65 51.98 16 15 O -0.98 -20.70 16.09 -57.18 -0.92 -21.62 16 16 O -1.00 -20.20 17.12 -57.18 -0.98 -21.18 16 17 N -1.01 -16.88 3.39 -112.82 -0.38 -17.26 16 18 C 0.10 1.41 6.58 -3.31 -0.02 1.39 16 19 C 0.05 0.67 7.00 37.53 0.26 0.94 16 20 O -0.38 -6.25 10.74 -35.23 -0.38 -6.63 16 21 C 0.04 0.68 6.98 37.31 0.26 0.94 16 22 C 0.09 1.50 6.59 -3.53 -0.02 1.47 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.03 0.69 7.72 -51.93 -0.40 0.29 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.10 2.52 5.94 -51.93 -0.31 2.21 16 28 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 29 H 0.40 7.12 8.96 -34.48 -0.31 6.81 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.23 7.40 -51.93 -0.38 0.85 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.10 1.66 6.92 -51.93 -0.36 1.30 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 312.89 15.07 4.72 4.72 Total: -1.00 -28.60 312.89 -8.38 -36.99 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.50 Total: 7.84 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 0.13 Total: -5.97 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.21 Total: -60.56 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -2.28 Total: -49.42 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 52.63 SS G_CDS: -0.65 Total: 51.98 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.60 -8.38 -36.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.594 kcal (2) G-P(sol) polarization free energy of solvation -28.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds