Wall clock time and date at job start Tue Mar 31 2020 00:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46837 * 2 1 4 4 H 1.09004 * 109.46825 * 305.34855 * 3 2 1 5 5 C 1.50703 * 109.46979 * 185.35727 * 3 2 1 6 6 H 1.07997 * 120.00049 * 239.99913 * 5 3 2 7 7 C 1.37876 * 120.00060 * 59.99487 * 5 3 2 8 8 N 1.31518 * 120.00069 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99956 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47436 * 89.99832 * 9 7 5 11 11 H 1.48498 * 109.47178 * 210.00142 * 9 7 5 12 12 H 1.48499 * 109.46941 * 330.00142 * 9 7 5 13 13 N 1.46500 * 109.47513 * 65.35442 * 3 2 1 14 14 S 1.65601 * 119.99955 * 240.13880 * 13 3 2 15 15 O 1.42094 * 106.40273 * 49.07281 * 14 13 3 16 16 O 1.42094 * 106.40008 * 181.99322 * 14 13 3 17 17 N 1.65604 * 107.21425 * 295.53418 * 14 13 3 18 18 C 1.47154 * 120.97820 * 275.24419 * 17 14 13 19 19 C 1.53713 * 108.16100 * 129.43575 * 18 17 14 20 20 O 1.42968 * 109.14568 * 52.53382 * 19 18 17 21 21 C 1.42960 * 114.17055 * 297.29087 * 20 19 18 22 22 C 1.47153 * 120.98352 * 95.52976 * 17 14 13 23 23 H 1.09004 * 109.46953 * 178.13557 * 1 2 3 24 24 H 1.08994 * 109.47552 * 298.14138 * 1 2 3 25 25 H 1.09000 * 109.47079 * 58.14571 * 1 2 3 26 26 H 1.09004 * 109.46798 * 119.99362 * 2 1 3 27 27 H 1.08998 * 109.47107 * 239.99998 * 2 1 3 28 28 H 0.96998 * 119.99535 * 179.97438 * 8 7 5 29 29 H 0.96995 * 119.99456 * 60.13498 * 13 3 2 30 30 H 1.09004 * 109.67856 * 249.21045 * 18 17 14 31 31 H 1.08999 * 109.68279 * 9.76755 * 18 17 14 32 32 H 1.08999 * 109.65533 * 292.57148 * 19 18 17 33 33 H 1.08997 * 109.48402 * 172.39350 * 19 18 17 34 34 H 1.09006 * 109.50755 * 302.65996 * 21 20 19 35 35 H 1.08991 * 109.55741 * 182.53421 * 21 20 19 36 36 H 1.09004 * 109.67910 * 350.23092 * 22 17 14 37 37 H 1.09000 * 109.67962 * 110.74528 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6005 1.9832 -0.8383 5 6 3.5412 1.4446 -0.1327 6 1 4.1510 1.8876 0.6408 7 6 4.1361 0.8810 -1.2414 8 7 3.3935 0.3410 -2.1831 9 14 5.9968 0.8830 -1.4055 10 1 6.5494 -0.3502 -0.7898 11 1 6.3670 0.9273 -2.8429 12 1 6.5534 2.0735 -0.7141 13 7 1.6598 2.0950 1.2554 14 16 0.6970 3.4422 1.2298 15 8 -0.4055 3.1316 0.3890 16 8 0.5513 3.8568 2.5811 17 7 1.5478 4.6381 0.4628 18 6 2.5064 5.4773 1.1992 19 6 3.8346 5.4791 0.4255 20 8 3.5849 5.8447 -0.9339 21 6 2.7429 4.9307 -1.6406 22 6 1.3629 4.8971 -0.9739 23 1 -0.3633 -1.0272 -0.0334 24 1 -0.3634 0.4847 0.9061 25 1 -0.3633 0.5424 -0.8729 26 1 1.8934 -0.5138 0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 3.8121 -0.0552 -2.9632 29 1 1.9719 1.7378 2.1014 30 1 2.1213 6.4942 1.2753 31 1 2.6621 5.0675 2.1972 32 1 4.2799 4.4848 0.4592 33 1 4.5172 6.1992 0.8767 34 1 3.1843 3.9344 -1.6143 35 1 2.6393 5.2558 -2.6757 36 1 0.7611 4.1029 -1.4156 37 1 0.8640 5.8562 -1.1128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:14 Heat of formation + Delta-G solvation = -148.954602 kcal Electronic energy + Delta-G solvation = -22040.949035 eV Core-core repulsion = 18751.056483 eV Total energy + Delta-G solvation = -3289.892552 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.04378 -38.41755 -37.60807 -36.91093 -35.70700 -34.11324 -32.27921 -32.21994 -28.51802 -27.95778 -25.13907 -24.82686 -22.43925 -21.91103 -20.28848 -19.24601 -18.66644 -18.13503 -17.41522 -16.92422 -16.58695 -16.22904 -15.98944 -15.78342 -15.31402 -15.18279 -14.83565 -14.62634 -13.66266 -13.52790 -13.41590 -13.24395 -13.16863 -13.06128 -13.02353 -12.70121 -12.66942 -12.62974 -12.24479 -12.11759 -11.77341 -11.58543 -11.45927 -11.36610 -11.10328 -10.46132 -9.98273 -9.76876 -8.07681 -6.21104 -0.31247 1.43910 1.48524 1.54317 1.93665 2.45484 2.64147 2.97421 3.20335 3.38138 3.74962 3.92713 4.25140 4.28809 4.32529 4.48749 4.50966 4.58768 4.68067 4.69581 4.70034 4.90252 4.93719 5.06097 5.13328 5.19805 5.35874 5.43423 5.54367 5.69846 5.81609 6.07967 6.20551 6.21844 6.46918 6.88018 7.48101 8.95214 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.010462 C = 0.007369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.669578 B = 2675.677458 C = 3798.573360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.291 3.709 4 H 0.024 0.976 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.029 3.971 8 N -0.908 5.908 9 Si 0.943 3.057 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.269 1.269 13 N -1.110 6.110 14 S 2.800 3.200 15 O -1.004 7.004 16 O -1.012 7.012 17 N -1.007 6.007 18 C 0.091 3.909 19 C 0.045 3.955 20 O -0.389 6.389 21 C 0.047 3.953 22 C 0.092 3.908 23 H 0.053 0.947 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.263 0.737 29 H 0.412 0.588 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.128 0.872 34 H 0.049 0.951 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.221 7.939 3.432 8.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.186 3.814 4 H 0.042 0.958 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.172 4.172 8 N -0.547 5.547 9 Si 0.770 3.230 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.193 1.193 13 N -0.871 5.871 14 S 2.808 3.192 15 O -0.988 6.988 16 O -0.997 6.997 17 N -0.848 5.848 18 C -0.034 4.034 19 C -0.033 4.033 20 O -0.308 6.308 21 C -0.031 4.031 22 C -0.033 4.033 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.246 0.754 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.066 0.934 33 H 0.146 0.854 34 H 0.067 0.933 35 H 0.136 0.864 36 H 0.104 0.896 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.106 8.172 3.355 8.903 hybrid contribution 1.302 -0.841 0.002 1.550 sum 0.196 7.331 3.356 8.066 Atomic orbital electron populations 1.21716 0.97200 1.00314 1.00327 1.21827 0.93634 0.99424 1.01840 1.18225 0.93828 0.90049 0.79336 0.95795 1.21613 0.92012 1.37784 1.05318 0.91985 1.25463 1.01181 0.94917 0.95607 1.69969 1.36152 1.38762 1.09812 0.85791 0.81832 0.78414 0.76974 1.20755 1.21451 1.19317 1.55733 1.70589 1.45060 1.15704 1.01165 0.73553 0.72612 0.71847 1.93548 1.51353 1.84246 1.69657 1.93522 1.86805 1.82627 1.36708 1.58016 1.58261 1.49837 1.18717 1.22260 0.89336 0.96406 0.95386 1.23158 0.96061 1.01897 0.82223 1.87844 1.68941 1.49581 1.24391 1.22984 0.89494 0.94147 0.96508 1.22099 0.98520 1.03348 0.79338 0.92783 0.94199 0.94408 0.93936 0.90271 0.92745 0.75424 0.88807 0.88492 0.93423 0.85397 0.93277 0.86367 0.89585 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.55 9.59 71.98 0.69 -4.86 16 2 C -0.13 -5.64 5.45 30.60 0.17 -5.48 16 3 C 0.29 12.94 2.30 44.25 0.10 13.04 16 4 H 0.02 1.18 7.50 -2.38 -0.02 1.16 16 5 C -0.53 -24.94 8.84 25.60 0.23 -24.72 16 6 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 7 C 0.03 1.42 5.29 84.65 0.45 1.87 16 8 N -0.91 -46.82 11.29 21.45 0.24 -46.58 16 9 Si 0.94 39.77 29.54 68.60 2.03 41.80 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 13 N -1.11 -42.19 4.93 -172.51 -0.85 -43.04 16 14 S 2.80 103.44 6.00 -56.49 -0.34 103.10 16 15 O -1.00 -42.03 16.09 -128.00 -2.06 -44.09 16 16 O -1.01 -39.27 17.12 -128.00 -2.19 -41.46 16 17 N -1.01 -32.46 3.39 -510.85 -1.73 -34.19 16 18 C 0.09 2.44 6.58 86.49 0.57 3.01 16 19 C 0.04 1.21 7.00 72.22 0.51 1.72 16 20 O -0.39 -11.92 10.74 -148.98 -1.60 -13.52 16 21 C 0.05 1.46 6.98 72.08 0.50 1.97 16 22 C 0.09 2.84 6.59 86.35 0.57 3.41 16 23 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.04 1.53 7.72 -2.39 -0.02 1.52 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.08 3.93 5.94 -2.39 -0.01 3.92 16 28 H 0.26 13.12 8.31 -92.71 -0.77 12.35 16 29 H 0.41 14.18 8.96 -96.75 -0.87 13.31 16 30 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.10 2.45 7.40 -2.39 -0.02 2.43 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.09 2.88 6.92 -2.39 -0.02 2.86 16 37 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -59.41 312.89 -2.52 -61.94 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.20 Total: 26.10 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 3.78 Total: -10.05 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -2.34 Total: -123.82 kcal Atomic # 8 Polarization: -93.22 SS G_CDS: -5.85 Total: -99.07 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Atomic # 16 Polarization: 103.44 SS G_CDS: -0.34 Total: 103.10 kcal Total: -59.41 -2.52 -61.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.018 kcal (2) G-P(sol) polarization free energy of solvation -59.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds