Wall clock time and date at job start Tue Mar 31 2020 01:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47310 * 2 1 4 4 C 1.50693 * 109.47006 * 120.00835 * 2 1 3 5 5 H 1.08001 * 120.00567 * 119.99963 * 4 2 1 6 6 C 1.37880 * 120.00141 * 299.98846 * 4 2 1 7 7 N 1.31516 * 119.99845 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00361 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46982 * 90.00260 * 8 6 4 10 10 H 1.48496 * 109.47404 * 210.00647 * 8 6 4 11 11 H 1.48503 * 109.47187 * 330.01032 * 8 6 4 12 12 N 1.46503 * 109.46522 * 240.00411 * 2 1 3 13 13 C 1.46509 * 120.00097 * 299.99917 * 12 2 1 14 14 C 1.34776 * 120.00305 * 120.00118 * 12 2 1 15 15 O 1.21560 * 119.99267 * 5.40838 * 14 12 2 16 16 C 1.47839 * 120.00579 * 185.40403 * 14 12 2 17 17 C 1.39593 * 120.14429 * 58.13479 * 16 14 12 18 18 C 1.37932 * 119.85627 * 179.70010 * 17 16 14 19 19 C 1.38386 * 120.14007 * 0.60125 * 18 17 16 20 20 C 1.38329 * 120.29721 * 359.67692 * 19 18 17 21 21 C 1.37987 * 120.14264 * 0.02562 * 20 19 18 22 22 N 1.48013 * 120.07334 * 180.02562 * 21 20 19 23 23 O 1.21799 * 120.00116 * 356.54295 * 22 21 20 24 24 O 1.21801 * 119.99911 * 176.54966 * 22 21 20 25 25 H 1.09004 * 109.47258 * 59.98953 * 1 2 3 26 26 H 1.09008 * 109.46778 * 299.99728 * 1 2 3 27 27 H 1.08993 * 109.47310 * 179.97438 * 1 2 3 28 28 H 0.96998 * 120.00456 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46390 * 86.03986 * 13 12 2 30 30 H 1.08996 * 109.47112 * 206.03997 * 13 12 2 31 31 H 1.08996 * 109.46719 * 326.04078 * 13 12 2 32 32 H 1.08007 * 120.07088 * 0.02562 * 17 16 14 33 33 H 1.07997 * 119.93398 * 180.30436 * 18 17 16 34 34 H 1.08001 * 119.85142 * 179.69722 * 19 18 17 35 35 H 1.08003 * 119.93492 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1312 6 6 1.6994 -0.2396 2.4827 7 7 0.9431 0.8296 2.6035 8 14 2.3226 -1.1199 4.0078 9 1 3.6307 -0.5445 4.4116 10 1 1.3446 -0.9494 5.1121 11 1 2.4881 -2.5657 3.7119 12 7 2.0182 -0.6906 -1.1963 13 6 1.6642 -2.0932 -1.4282 14 6 2.7931 -0.0356 -2.0835 15 8 3.1680 1.0956 -1.8440 16 6 3.1870 -0.6929 -3.3478 17 6 2.2103 -1.1514 -4.2335 18 6 2.5845 -1.7583 -5.4142 19 6 3.9248 -1.9241 -5.7159 20 6 4.8978 -1.4772 -4.8400 21 6 4.5369 -0.8630 -3.6583 22 7 5.5792 -0.3850 -2.7224 23 8 6.7553 -0.5894 -2.9646 24 8 5.2609 0.2128 -1.7100 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7085 1.1608 3.4845 29 1 0.7021 -2.1455 -1.9378 30 1 2.4289 -2.5635 -2.0464 31 1 1.5983 -2.6139 -0.4730 32 1 1.1638 -1.0266 -3.9971 33 1 1.8299 -2.1090 -6.1026 34 1 4.2126 -2.4043 -6.6395 35 1 5.9421 -1.6101 -5.0811 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094032.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:47 Heat of formation + Delta-G solvation = 2.086866 kcal Electronic energy + Delta-G solvation = -22117.478010 eV Core-core repulsion = 18698.691156 eV Total energy + Delta-G solvation = -3418.786854 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.93182 -39.95251 -38.34498 -36.16392 -35.36195 -33.01552 -32.09986 -31.62142 -29.25661 -26.58219 -26.18588 -25.22218 -24.03006 -22.55378 -21.26034 -19.44463 -18.56546 -18.15165 -17.23531 -16.99516 -16.33502 -15.97134 -15.58063 -15.35063 -14.73519 -14.28810 -14.03505 -13.31796 -13.13308 -12.64396 -12.53095 -12.47161 -11.94459 -11.75023 -11.53866 -11.16662 -11.04305 -10.85318 -10.77061 -10.70370 -10.64629 -10.24366 -10.15891 -9.78637 -9.50909 -9.24516 -9.09840 -8.40593 -7.67309 -6.05261 -4.12383 -0.14048 0.61948 1.47255 1.61168 2.94333 3.25555 3.31266 3.37953 3.40317 3.66649 4.23381 4.38138 4.44067 4.55287 4.70028 4.76385 4.98789 5.26952 5.34795 5.52916 5.58183 5.66822 5.78451 5.88732 6.10142 6.26775 6.63294 6.70105 6.76366 7.00403 7.32290 7.47975 7.70603 7.95235 7.99601 8.17805 8.40901 8.77013 8.94384 9.53440 11.00455 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022285 B = 0.005853 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.139728 B = 4783.115310 C = 5405.238702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.260 3.740 3 H 0.067 0.933 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.580 5.580 13 C 0.082 3.918 14 C 0.537 3.463 15 O -0.503 6.503 16 C -0.044 4.044 17 C -0.092 4.092 18 C -0.074 4.074 19 C -0.113 4.113 20 C -0.062 4.062 21 C -0.014 4.014 22 N 0.015 4.985 23 O -0.187 6.187 24 O -0.092 6.092 25 H 0.010 0.990 26 H 0.096 0.904 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 -8.385 -17.059 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.085 0.915 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.312 5.312 13 C -0.062 4.062 14 C 0.320 3.680 15 O -0.378 6.378 16 C -0.049 4.049 17 C -0.111 4.111 18 C -0.092 4.092 19 C -0.132 4.132 20 C -0.081 4.081 21 C -0.098 4.098 22 N 0.537 4.463 23 O -0.393 6.393 24 O -0.321 6.321 25 H 0.030 0.970 26 H 0.114 0.886 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.317 -7.923 -17.254 18.989 hybrid contribution 0.592 -0.499 1.005 1.268 sum 0.908 -8.422 -16.249 18.325 Atomic orbital electron populations 1.22105 0.97969 0.99460 1.00927 1.19018 0.90716 0.94679 0.79494 0.91512 1.21254 1.31711 1.13043 0.90168 0.92279 1.24860 0.94865 0.94971 0.98925 1.69865 1.36367 1.22619 1.23789 0.86486 0.78776 0.79789 0.82293 1.20426 1.21172 1.20028 1.48169 1.48341 1.11401 1.23255 1.21658 0.98536 0.83382 1.02609 1.17882 0.80515 0.86853 0.82733 1.90837 1.52927 1.18365 1.75698 1.20391 0.91066 0.95433 0.98031 1.21423 0.99787 0.96717 0.93209 1.21541 0.96706 0.95113 0.95875 1.21285 0.92171 0.99984 0.99748 1.21017 1.02428 0.94003 0.90620 1.21185 0.87458 1.07383 0.93752 1.43601 1.01546 0.99482 1.01697 1.94465 1.01825 1.62108 1.80926 1.94833 1.87184 1.36371 1.13717 0.97046 0.88583 0.95093 0.92668 0.93459 0.93485 0.89682 0.83171 0.83671 0.83539 0.82796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.97 37.16 0.33 -3.05 16 2 C 0.26 6.61 2.63 -69.08 -0.18 6.43 16 3 H 0.07 1.98 6.91 -51.93 -0.36 1.62 16 4 C -0.52 -14.24 8.02 -34.44 -0.28 -14.52 16 5 H 0.06 1.60 7.27 -52.49 -0.38 1.22 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.58 -12.35 2.75 -176.38 -0.49 -12.83 16 13 C 0.08 1.36 8.46 59.85 0.51 1.87 16 14 C 0.54 11.44 5.76 -12.33 -0.07 11.37 16 15 O -0.50 -12.84 14.01 -18.95 -0.27 -13.11 16 16 C -0.04 -0.72 4.32 -104.97 -0.45 -1.17 16 17 C -0.09 -1.04 8.39 -39.19 -0.33 -1.37 16 18 C -0.07 -0.57 10.03 -39.64 -0.40 -0.97 16 19 C -0.11 -0.87 10.04 -39.49 -0.40 -1.26 16 20 C -0.06 -0.68 9.55 -39.64 -0.38 -1.06 16 21 C -0.01 -0.23 6.88 -79.55 -0.55 -0.78 16 22 N 0.01 0.29 4.45 34.16 0.15 0.44 16 23 O -0.19 -3.50 18.45 -29.46 -0.54 -4.04 16 24 O -0.09 -2.17 14.91 -37.14 -0.55 -2.73 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.10 2.47 6.07 -51.92 -0.32 2.15 16 27 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.05 0.68 6.58 -51.93 -0.34 0.34 16 31 H 0.08 1.51 6.97 -51.93 -0.36 1.15 16 32 H 0.15 1.49 7.95 -52.48 -0.42 1.08 16 33 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.15 1.45 7.61 -52.48 -0.40 1.05 16 LS Contribution 302.81 15.07 4.56 4.56 Total: -1.00 -33.67 302.81 -7.61 -41.28 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -3.80 Total: -2.63 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.29 Total: -2.81 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.29 Total: -36.89 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -1.36 Total: -19.88 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.67 -7.61 -41.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094032.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.370 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds