Wall clock time and date at job start Tue Mar 31 2020 01:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47310 * 2 1 4 4 C 1.50693 * 109.47006 * 120.00835 * 2 1 3 5 5 H 1.08001 * 120.00567 * 119.99963 * 4 2 1 6 6 C 1.37880 * 120.00141 * 299.98846 * 4 2 1 7 7 N 1.31516 * 119.99845 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00361 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46982 * 90.00260 * 8 6 4 10 10 H 1.48496 * 109.47404 * 210.00647 * 8 6 4 11 11 H 1.48503 * 109.47187 * 330.01032 * 8 6 4 12 12 N 1.46503 * 109.46522 * 240.00411 * 2 1 3 13 13 C 1.46509 * 120.00097 * 299.99917 * 12 2 1 14 14 C 1.34776 * 120.00305 * 120.00118 * 12 2 1 15 15 O 1.21560 * 119.99267 * 5.40838 * 14 12 2 16 16 C 1.47839 * 120.00579 * 185.40403 * 14 12 2 17 17 C 1.39593 * 120.14429 * 58.13479 * 16 14 12 18 18 C 1.37932 * 119.85627 * 179.70010 * 17 16 14 19 19 C 1.38386 * 120.14007 * 0.60125 * 18 17 16 20 20 C 1.38329 * 120.29721 * 359.67692 * 19 18 17 21 21 C 1.37987 * 120.14264 * 0.02562 * 20 19 18 22 22 N 1.48013 * 120.07334 * 180.02562 * 21 20 19 23 23 O 1.21799 * 120.00116 * 356.54295 * 22 21 20 24 24 O 1.21801 * 119.99911 * 176.54966 * 22 21 20 25 25 H 1.09004 * 109.47258 * 59.98953 * 1 2 3 26 26 H 1.09008 * 109.46778 * 299.99728 * 1 2 3 27 27 H 1.08993 * 109.47310 * 179.97438 * 1 2 3 28 28 H 0.96998 * 120.00456 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46390 * 86.03986 * 13 12 2 30 30 H 1.08996 * 109.47112 * 206.03997 * 13 12 2 31 31 H 1.08996 * 109.46719 * 326.04078 * 13 12 2 32 32 H 1.08007 * 120.07088 * 0.02562 * 17 16 14 33 33 H 1.07997 * 119.93398 * 180.30436 * 18 17 16 34 34 H 1.08001 * 119.85142 * 179.69722 * 19 18 17 35 35 H 1.08003 * 119.93492 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1312 6 6 1.6994 -0.2396 2.4827 7 7 0.9431 0.8296 2.6035 8 14 2.3226 -1.1199 4.0078 9 1 3.6307 -0.5445 4.4116 10 1 1.3446 -0.9494 5.1121 11 1 2.4881 -2.5657 3.7119 12 7 2.0182 -0.6906 -1.1963 13 6 1.6642 -2.0932 -1.4282 14 6 2.7931 -0.0356 -2.0835 15 8 3.1680 1.0956 -1.8440 16 6 3.1870 -0.6929 -3.3478 17 6 2.2103 -1.1514 -4.2335 18 6 2.5845 -1.7583 -5.4142 19 6 3.9248 -1.9241 -5.7159 20 6 4.8978 -1.4772 -4.8400 21 6 4.5369 -0.8630 -3.6583 22 7 5.5792 -0.3850 -2.7224 23 8 6.7553 -0.5894 -2.9646 24 8 5.2609 0.2128 -1.7100 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7085 1.1608 3.4845 29 1 0.7021 -2.1455 -1.9378 30 1 2.4289 -2.5635 -2.0464 31 1 1.5983 -2.6139 -0.4730 32 1 1.1638 -1.0266 -3.9971 33 1 1.8299 -2.1090 -6.1026 34 1 4.2126 -2.4043 -6.6395 35 1 5.9421 -1.6101 -5.0811 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094032.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:47 Heat of formation + Delta-G solvation = -19.944023 kcal Electronic energy + Delta-G solvation = -22118.433341 eV Core-core repulsion = 18698.691156 eV Total energy + Delta-G solvation = -3419.742185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.29959 -41.27009 -39.60812 -37.65886 -37.12733 -34.90109 -33.08578 -32.82970 -31.00541 -27.90848 -27.58552 -27.31665 -25.19537 -23.70203 -22.77601 -20.91227 -19.96003 -19.45843 -18.68558 -18.57266 -18.10357 -17.48101 -16.81283 -16.55349 -16.11918 -15.59294 -15.44992 -14.76322 -14.39991 -14.27700 -13.90720 -13.58896 -13.40688 -13.14834 -12.95819 -12.81481 -12.73960 -12.67459 -12.65703 -12.25771 -12.23763 -12.14831 -12.05424 -11.22688 -10.89930 -10.65027 -10.54446 -10.32123 -9.40436 -8.16841 -6.32329 -1.35056 -0.23104 0.26549 0.40753 1.37109 1.41155 1.48887 1.62803 2.10562 2.35101 2.42268 3.11452 3.26293 3.35024 3.69849 3.91935 3.93557 4.12743 4.26106 4.53881 4.62770 4.74668 4.75628 4.88397 4.91442 4.96723 5.02358 5.05753 5.15818 5.45063 5.50066 5.54607 5.63639 6.01706 6.14435 6.43033 6.66761 6.73246 7.22136 7.40428 8.87801 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022285 B = 0.005853 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.139728 B = 4783.115310 C = 5405.238702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.265 3.735 3 H 0.006 0.994 4 C -0.538 4.538 5 H 0.052 0.948 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.962 3.038 9 H -0.286 1.286 10 H -0.273 1.273 11 H -0.263 1.263 12 N -0.589 5.589 13 C 0.082 3.918 14 C 0.530 3.470 15 O -0.566 6.566 16 C -0.076 4.076 17 C -0.089 4.089 18 C -0.041 4.041 19 C -0.084 4.084 20 C -0.055 4.055 21 C -0.046 4.046 22 N 0.020 4.980 23 O -0.138 6.138 24 O -0.221 6.221 25 H 0.026 0.974 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.265 0.735 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.164 0.836 33 H 0.202 0.798 34 H 0.204 0.796 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 -12.152 -21.284 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.163 3.837 3 H 0.024 0.976 4 C -0.576 4.576 5 H 0.070 0.930 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.787 3.213 9 H -0.213 1.213 10 H -0.198 1.198 11 H -0.187 1.187 12 N -0.320 5.320 13 C -0.060 4.060 14 C 0.316 3.684 15 O -0.445 6.445 16 C -0.080 4.080 17 C -0.108 4.108 18 C -0.058 4.058 19 C -0.102 4.102 20 C -0.074 4.074 21 C -0.130 4.130 22 N 0.533 4.467 23 O -0.364 6.364 24 O -0.421 6.421 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.181 0.819 33 H 0.219 0.781 34 H 0.221 0.779 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.486 -11.628 -21.328 24.296 hybrid contribution 0.913 0.529 1.951 2.218 sum 0.427 -11.099 -19.377 22.334 Atomic orbital electron populations 1.21843 0.96080 1.00471 1.00295 1.18570 0.92023 0.91976 0.81127 0.97600 1.21501 1.31752 1.12972 0.91424 0.92955 1.25678 0.95035 0.95682 1.01829 1.70001 1.37187 1.23720 1.24463 0.85508 0.77825 0.79149 0.78850 1.21280 1.19838 1.18705 1.48113 1.48580 1.13155 1.22153 1.21867 1.01158 0.80409 1.02616 1.18689 0.79001 0.86315 0.84350 1.90776 1.54706 1.21420 1.77624 1.20030 0.92467 0.98782 0.96771 1.21741 0.99282 0.96159 0.93611 1.22207 0.98201 0.91281 0.94111 1.22007 0.91129 0.97005 1.00011 1.21515 1.04677 0.92510 0.88715 1.21495 0.86058 1.10608 0.94810 1.44231 1.02310 0.98405 1.01776 1.94356 1.03282 1.59000 1.79785 1.94880 1.87557 1.42271 1.17348 0.95482 0.91325 0.93001 0.92535 0.89722 0.91178 0.91335 0.81886 0.78078 0.77943 0.80862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.16 8.97 71.98 0.65 -5.52 16 2 C 0.26 14.40 2.63 44.24 0.12 14.52 16 3 H 0.01 0.40 6.91 -2.39 -0.02 0.38 16 4 C -0.54 -30.98 8.02 25.60 0.21 -30.78 16 5 H 0.05 3.00 7.27 -2.91 -0.02 2.97 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.91 -54.37 11.32 21.45 0.24 -54.13 16 8 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 9 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.59 -26.38 2.75 -830.21 -2.29 -28.67 16 13 C 0.08 2.65 8.46 127.77 1.08 3.73 16 14 C 0.53 24.21 5.76 86.78 0.50 24.70 16 15 O -0.57 -32.30 14.01 19.30 0.27 -32.03 16 16 C -0.08 -2.44 4.32 -20.09 -0.09 -2.52 16 17 C -0.09 -1.65 8.39 22.52 0.19 -1.46 16 18 C -0.04 -0.31 10.03 22.23 0.22 -0.09 16 19 C -0.08 -0.63 10.04 22.33 0.22 -0.40 16 20 C -0.06 -0.97 9.55 22.23 0.21 -0.76 16 21 C -0.05 -1.43 6.88 36.64 0.25 -1.18 16 22 N 0.02 0.81 4.45 -45.85 -0.20 0.61 16 23 O -0.14 -5.19 18.45 18.89 0.35 -4.84 16 24 O -0.22 -11.67 14.91 26.23 0.39 -11.28 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 3.69 6.07 -2.38 -0.01 3.67 16 27 H 0.05 2.21 7.67 -2.39 -0.02 2.19 16 28 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.08 2.08 8.10 -2.39 -0.02 2.06 16 30 H 0.07 1.93 6.58 -2.39 -0.02 1.91 16 31 H 0.07 2.44 6.97 -2.39 -0.02 2.42 16 32 H 0.16 2.57 7.95 -2.91 -0.02 2.55 16 33 H 0.20 -0.44 8.06 -2.91 -0.02 -0.47 16 34 H 0.20 -0.49 8.06 -2.91 -0.02 -0.52 16 35 H 0.17 2.38 7.61 -2.91 -0.02 2.36 16 Total: -1.00 -88.12 302.81 5.92 -82.20 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: 1.12 Total: -0.86 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 4.01 Total: 1.69 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -2.25 Total: -82.18 kcal Atomic # 8 Polarization: -49.16 SS G_CDS: 1.01 Total: -48.15 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -88.12 5.92 -82.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094032.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.259 kcal (2) G-P(sol) polarization free energy of solvation -88.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds