Wall clock time and date at job start Tue Mar 31 2020 01:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47637 * 2 1 4 4 C 1.50708 * 109.47035 * 240.00098 * 2 1 3 5 5 H 1.07996 * 120.00186 * 240.00494 * 4 2 1 6 6 C 1.37878 * 119.99895 * 59.99772 * 4 2 1 7 7 N 1.31516 * 119.99607 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00080 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47092 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46744 * 119.99977 * 8 6 4 11 11 H 1.48490 * 109.47322 * 240.00128 * 8 6 4 12 12 N 1.46497 * 109.47422 * 120.00424 * 2 1 3 13 13 C 1.46499 * 120.00081 * 59.99642 * 12 2 1 14 14 C 1.34777 * 120.00119 * 240.00007 * 12 2 1 15 15 O 1.21553 * 119.99880 * 4.59862 * 14 12 2 16 16 C 1.47844 * 120.00079 * 184.33099 * 14 12 2 17 17 C 1.39599 * 120.14321 * 301.79123 * 16 14 12 18 18 C 1.37937 * 119.85674 * 180.02562 * 17 16 14 19 19 C 1.38387 * 120.14041 * 0.02562 * 18 17 16 20 20 C 1.38333 * 120.29231 * 0.02562 * 19 18 17 21 21 C 1.37976 * 120.14723 * 359.67201 * 20 19 18 22 22 N 1.48023 * 120.07682 * 180.30427 * 21 20 19 23 23 O 1.21804 * 119.99517 * 3.08431 * 22 21 20 24 24 O 1.21798 * 120.00102 * 183.08747 * 22 21 20 25 25 H 1.09002 * 109.46730 * 299.99990 * 1 2 3 26 26 H 1.08995 * 109.47224 * 59.99260 * 1 2 3 27 27 H 1.08998 * 109.47400 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99396 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47024 * 264.90769 * 13 12 2 30 30 H 1.08997 * 109.47393 * 24.90762 * 13 12 2 31 31 H 1.09004 * 109.47522 * 144.91003 * 13 12 2 32 32 H 1.08003 * 120.06969 * 0.02562 * 17 16 14 33 33 H 1.07999 * 119.92856 * 180.02562 * 18 17 16 34 34 H 1.07997 * 119.84843 * 179.97438 * 19 18 17 35 35 H 1.08000 * 119.92536 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8302 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 3.1473 -2.2862 -3.6039 10 1 1.1675 -1.5865 -4.8165 11 1 3.1470 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0181 1.1496 1.9351 16 6 3.3649 -0.7577 3.2399 17 6 2.5244 -1.4048 4.1475 18 6 3.0640 -2.0761 5.2248 19 6 4.4354 -2.1086 5.4073 20 6 5.2738 -1.4685 4.5123 21 6 4.7472 -0.7987 3.4270 22 7 5.6461 -0.1200 2.4666 23 8 6.8539 -0.1997 2.6023 24 8 5.1780 0.5180 1.5407 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.7094 1.1618 -3.4843 29 1 0.7888 -2.1448 2.0749 30 1 1.4412 -2.5739 0.4754 31 1 2.5000 -2.6047 1.9059 32 1 1.4539 -1.3798 4.0063 33 1 2.4149 -2.5775 5.9274 34 1 4.8528 -2.6352 6.2527 35 1 6.3432 -1.4973 4.6607 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:49 Heat of formation + Delta-G solvation = 1.946778 kcal Electronic energy + Delta-G solvation = -22143.317032 eV Core-core repulsion = 18724.524104 eV Total energy + Delta-G solvation = -3418.792929 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.91216 -39.95439 -38.34109 -36.14409 -35.36853 -33.03254 -32.08926 -31.62112 -29.23926 -26.57686 -26.20364 -25.21751 -24.00269 -22.55539 -21.25080 -19.45965 -18.54385 -18.13202 -17.22098 -17.00352 -16.30375 -15.97942 -15.57635 -15.34114 -14.76035 -14.29151 -14.04197 -13.30050 -13.15042 -12.65541 -12.54623 -12.47281 -11.93660 -11.70120 -11.53462 -11.14838 -11.05743 -10.84719 -10.75403 -10.68204 -10.62952 -10.23337 -10.17568 -9.77309 -9.50056 -9.24520 -9.09498 -8.41407 -7.67876 -6.05831 -4.13210 -0.12506 0.62657 1.49011 1.62855 2.94858 3.24835 3.28771 3.37671 3.41018 3.68374 4.23537 4.38008 4.43780 4.55095 4.70260 4.77149 4.99392 5.26301 5.34765 5.53931 5.60937 5.67072 5.78180 5.85621 6.10789 6.25366 6.65154 6.72157 6.78020 7.01982 7.32927 7.48825 7.70588 7.97135 8.00333 8.17579 8.40960 8.76121 8.94227 9.52755 10.99872 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.005963 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.346026 B = 4694.836935 C = 5268.951103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.260 3.740 3 H 0.068 0.932 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.282 1.282 12 N -0.580 5.580 13 C 0.081 3.919 14 C 0.538 3.462 15 O -0.506 6.506 16 C -0.045 4.045 17 C -0.094 4.094 18 C -0.075 4.075 19 C -0.113 4.113 20 C -0.062 4.062 21 C -0.013 4.013 22 N 0.015 4.985 23 O -0.188 6.188 24 O -0.091 6.091 25 H 0.011 0.989 26 H 0.095 0.905 27 H 0.029 0.971 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.005 -9.190 16.426 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.161 3.839 3 H 0.086 0.914 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.208 1.208 12 N -0.311 5.311 13 C -0.063 4.063 14 C 0.322 3.678 15 O -0.381 6.381 16 C -0.050 4.050 17 C -0.113 4.113 18 C -0.093 4.093 19 C -0.132 4.132 20 C -0.081 4.081 21 C -0.096 4.096 22 N 0.537 4.463 23 O -0.393 6.393 24 O -0.320 6.320 25 H 0.030 0.970 26 H 0.114 0.886 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.670 -8.792 16.675 18.925 hybrid contribution 0.573 -0.462 -1.037 1.272 sum 2.242 -9.255 15.638 18.309 Atomic orbital electron populations 1.22095 0.97964 0.99400 1.00964 1.19043 0.90854 0.94752 0.79293 0.91395 1.21299 1.31756 1.13043 0.90173 0.92289 1.24862 0.94876 0.94958 0.98924 1.69884 1.36389 1.22512 1.23701 0.86433 0.78544 0.79626 0.82758 1.19889 1.20997 1.20754 1.48183 1.48118 1.11532 1.23264 1.21695 0.98475 0.83347 1.02818 1.17859 0.80493 0.87318 0.82133 1.90826 1.59103 1.14436 1.73751 1.20378 0.91131 0.95582 0.97859 1.21444 1.00764 0.95684 0.93414 1.21537 0.95505 0.95909 0.96331 1.21284 0.93210 0.99377 0.99314 1.21014 1.02433 0.93553 0.91070 1.21171 0.89403 1.04310 0.94744 1.43594 1.01271 0.99949 1.01507 1.94465 0.97077 1.67446 1.80350 1.94830 1.79379 1.36392 1.21413 0.96967 0.88624 0.95158 0.92700 0.93613 0.89388 0.93497 0.83165 0.83681 0.83545 0.82789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.26 6.62 2.63 -69.08 -0.18 6.44 16 3 H 0.07 2.02 6.91 -51.93 -0.36 1.66 16 4 C -0.52 -14.24 7.96 -34.44 -0.27 -14.51 16 5 H 0.06 1.60 7.42 -52.49 -0.39 1.21 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.31 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.58 -12.35 2.75 -176.38 -0.49 -12.84 16 13 C 0.08 1.32 8.20 59.85 0.49 1.81 16 14 C 0.54 11.49 5.76 -12.33 -0.07 11.42 16 15 O -0.51 -12.88 14.05 -18.88 -0.27 -13.14 16 16 C -0.04 -0.73 4.55 -104.97 -0.48 -1.21 16 17 C -0.09 -1.06 8.13 -39.18 -0.32 -1.38 16 18 C -0.07 -0.58 10.03 -39.64 -0.40 -0.97 16 19 C -0.11 -0.88 10.04 -39.49 -0.40 -1.27 16 20 C -0.06 -0.69 9.55 -39.64 -0.38 -1.07 16 21 C -0.01 -0.21 6.88 -79.55 -0.55 -0.75 16 22 N 0.01 0.29 4.45 34.16 0.15 0.45 16 23 O -0.19 -3.55 18.45 -29.46 -0.54 -4.09 16 24 O -0.09 -2.17 14.94 -37.12 -0.55 -2.72 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 27 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 29 H 0.05 0.61 7.54 -51.93 -0.39 0.22 16 30 H 0.09 1.54 7.10 -51.93 -0.37 1.17 16 31 H 0.05 0.67 6.60 -51.93 -0.34 0.33 16 32 H 0.15 1.46 7.25 -52.48 -0.38 1.08 16 33 H 0.15 0.59 8.06 -52.49 -0.42 0.16 16 34 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.15 1.47 7.61 -52.49 -0.40 1.07 16 LS Contribution 301.56 15.07 4.54 4.54 Total: -1.00 -33.77 301.56 -7.61 -41.38 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -3.75 Total: -2.53 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.31 Total: -2.85 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.29 Total: -36.89 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -1.36 Total: -19.96 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.77 -7.61 -41.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.323 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds