Wall clock time and date at job start Tue Mar 31 2020 01:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47345 * 2 1 4 4 C 1.50700 * 109.46777 * 120.00044 * 2 1 3 5 5 H 1.08005 * 119.99858 * 119.99854 * 4 2 1 6 6 C 1.37878 * 120.00028 * 299.99836 * 4 2 1 7 7 N 1.31510 * 119.99643 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99752 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47295 * 60.00103 * 8 6 4 10 10 H 1.48501 * 109.46746 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47181 * 299.99766 * 8 6 4 12 12 N 1.46508 * 109.47044 * 239.99845 * 2 1 3 13 13 C 1.46495 * 119.99769 * 300.00288 * 12 2 1 14 14 C 1.34774 * 119.99926 * 120.00182 * 12 2 1 15 15 O 1.21555 * 119.99921 * 4.34594 * 14 12 2 16 16 C 1.47845 * 119.99812 * 184.33870 * 14 12 2 17 17 C 1.39589 * 120.14816 * 320.30429 * 16 14 12 18 18 C 1.37934 * 119.85355 * 179.76473 * 17 16 14 19 19 C 1.38382 * 120.14559 * 0.51307 * 18 17 16 20 20 C 1.38339 * 120.29080 * 359.74037 * 19 18 17 21 21 N 1.48008 * 119.92779 * 179.97438 * 20 19 18 22 22 O 1.21798 * 120.00011 * 180.02562 * 21 20 19 23 23 O 1.21803 * 119.99992 * 0.02562 * 21 20 19 24 24 C 1.37976 * 120.14572 * 359.97438 * 20 19 18 25 25 H 1.09000 * 109.47345 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47094 * 300.00288 * 1 2 3 27 27 H 1.09002 * 109.46584 * 60.00151 * 1 2 3 28 28 H 0.97007 * 119.99493 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47189 * 271.69918 * 13 12 2 30 30 H 1.09004 * 109.47276 * 151.70231 * 13 12 2 31 31 H 1.09002 * 109.47504 * 31.70054 * 13 12 2 32 32 H 1.08004 * 120.07252 * 0.02562 * 17 16 14 33 33 H 1.08000 * 119.92849 * 180.25428 * 18 17 16 34 34 H 1.08002 * 119.85420 * 179.76232 * 19 18 17 35 35 H 1.08004 * 120.07390 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3224 -1.1196 4.0079 9 1 3.8073 -1.1191 4.0078 10 1 1.8278 -0.4192 5.2204 11 1 1.8279 -2.5198 4.0081 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7933 -0.0357 -2.0834 15 8 3.1522 1.1025 -1.8528 16 6 3.2068 -0.7017 -3.3369 17 6 3.5670 -2.0503 -3.3284 18 6 3.9471 -2.6669 -4.5022 19 6 3.9821 -1.9488 -5.6847 20 6 3.6314 -0.6107 -5.6990 21 7 3.6722 0.1498 -6.9682 22 8 3.3641 1.3281 -6.9822 23 8 4.0138 -0.4028 -7.9985 24 6 3.2436 0.0166 -4.5329 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 0.7089 1.1614 3.4844 29 1 2.3993 -2.7379 -0.9459 30 1 1.6533 -2.2929 -2.4995 31 1 0.6772 -2.2925 -1.0110 32 1 3.5440 -2.6108 -2.4054 33 1 4.2221 -3.7113 -4.4978 34 1 4.2841 -2.4353 -6.6004 35 1 2.9696 1.0612 -4.5455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:52 Heat of formation + Delta-G solvation = 0.185490 kcal Electronic energy + Delta-G solvation = -21252.089677 eV Core-core repulsion = 17833.220373 eV Total energy + Delta-G solvation = -3418.869304 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.27713 -40.33165 -38.37528 -36.65014 -35.65604 -33.34953 -32.12977 -31.67737 -29.38936 -26.91895 -26.33532 -25.36238 -24.26359 -22.63738 -21.40093 -19.83258 -18.75535 -18.35788 -17.62269 -16.92154 -16.70831 -16.30002 -15.68200 -15.40812 -14.71506 -14.55146 -14.20228 -13.34228 -13.29903 -13.01314 -12.67003 -12.40632 -12.08630 -11.71352 -11.64491 -11.58951 -11.27140 -11.22284 -11.17379 -10.92792 -10.86385 -10.41196 -10.29072 -9.79295 -9.61305 -9.39720 -9.25241 -8.54990 -7.86462 -6.18725 -4.27921 -0.31433 0.51923 1.18056 1.25905 2.75774 3.19997 3.26323 3.26572 3.36218 3.55875 4.19800 4.25331 4.32094 4.51797 4.59726 4.66407 4.96911 5.12824 5.28268 5.40394 5.46229 5.64441 5.76324 5.78294 5.95384 6.05101 6.30257 6.60931 6.65901 6.87940 7.18202 7.31470 7.54288 7.56640 7.84965 8.02084 8.25548 8.59148 8.77941 9.38795 10.86659 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033928 B = 0.004049 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.085467 B = 6913.070507 C = 7301.527923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.579 5.579 13 C 0.075 3.925 14 C 0.543 3.457 15 O -0.534 6.534 16 C -0.111 4.111 17 C -0.043 4.043 18 C -0.124 4.124 19 C -0.045 4.045 20 C -0.053 4.053 21 N 0.031 4.969 22 O -0.156 6.156 23 O -0.164 6.164 24 C -0.009 4.009 25 H 0.032 0.968 26 H 0.097 0.903 27 H 0.013 0.987 28 H 0.266 0.734 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.887 -9.627 -12.604 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.158 3.842 3 H 0.084 0.916 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.309 5.309 13 C -0.069 4.069 14 C 0.328 3.672 15 O -0.412 6.412 16 C -0.115 4.115 17 C -0.062 4.062 18 C -0.143 4.143 19 C -0.064 4.064 20 C -0.136 4.136 21 N 0.550 4.450 22 O -0.373 6.373 23 O -0.379 6.379 24 C -0.029 4.029 25 H 0.051 0.949 26 H 0.115 0.885 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.174 0.826 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.933 -9.262 -11.675 15.189 hybrid contribution 0.305 -0.393 0.537 0.731 sum 3.238 -9.654 -11.139 15.092 Atomic orbital electron populations 1.22119 0.97854 0.99564 1.01144 1.19071 0.91054 0.94599 0.79446 0.91583 1.21211 1.32355 1.13190 0.90124 0.92261 1.24889 0.94817 0.94929 0.99015 1.69858 1.35979 1.22393 1.24108 0.86521 0.79260 0.79529 0.81884 1.20200 1.21073 1.20189 1.48228 1.47817 1.11701 1.23192 1.21972 1.02299 0.83153 0.99470 1.17961 0.80202 0.86203 0.82832 1.90803 1.55310 1.18004 1.77066 1.20286 1.02429 0.94288 0.94503 1.22244 0.90610 0.93354 0.99992 1.21185 1.01051 1.01190 0.90854 1.21183 0.93804 0.90768 1.00691 1.20972 1.14481 0.93580 0.84536 1.43582 0.97695 1.01164 1.02546 1.94577 1.50858 0.99048 1.92844 1.94512 1.49794 1.71823 1.21808 1.21062 0.91324 1.01704 0.88766 0.94937 0.88497 0.96827 0.92443 0.92530 0.92389 0.90340 0.82555 0.82989 0.82800 0.82160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.95 37.16 0.33 -3.01 16 2 C 0.26 6.20 2.63 -69.08 -0.18 6.02 16 3 H 0.07 1.86 6.91 -51.93 -0.36 1.50 16 4 C -0.53 -13.53 8.37 -34.44 -0.29 -13.82 16 5 H 0.06 1.47 7.60 -52.48 -0.40 1.07 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.12 11.32 55.43 0.63 -23.49 16 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 N -0.58 -11.32 2.75 -176.37 -0.49 -11.80 16 13 C 0.07 1.08 8.14 59.84 0.49 1.56 16 14 C 0.54 10.52 7.35 -12.33 -0.09 10.43 16 15 O -0.53 -12.64 16.26 5.32 0.09 -12.55 16 16 C -0.11 -1.60 5.22 -104.97 -0.55 -2.15 16 17 C -0.04 -0.46 7.47 -39.19 -0.29 -0.75 16 18 C -0.12 -0.99 10.03 -39.64 -0.40 -1.38 16 19 C -0.05 -0.42 9.55 -39.49 -0.38 -0.80 16 20 C -0.05 -0.66 6.84 -80.01 -0.55 -1.21 16 21 N 0.03 0.44 4.45 33.93 0.15 0.59 16 22 O -0.16 -2.44 18.44 -29.46 -0.54 -2.98 16 23 O -0.16 -2.30 18.44 -29.46 -0.54 -2.84 16 24 C -0.01 -0.12 9.14 -39.18 -0.36 -0.48 16 25 H 0.03 0.66 6.67 -51.93 -0.35 0.32 16 26 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.06 0.74 7.23 -51.93 -0.38 0.37 16 30 H 0.06 0.65 5.38 -51.93 -0.28 0.38 16 31 H 0.08 1.16 6.43 -51.93 -0.33 0.83 16 32 H 0.16 1.46 5.55 -52.48 -0.29 1.17 16 33 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 34 H 0.15 1.11 7.60 -52.49 -0.40 0.72 16 35 H 0.16 2.38 7.60 -52.48 -0.40 1.98 16 LS Contribution 303.06 15.07 4.57 4.57 Total: -1.00 -30.65 303.06 -6.99 -37.64 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -3.48 Total: -0.32 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.36 Total: -3.94 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.29 Total: -34.70 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -1.00 Total: -18.37 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.65 -6.99 -37.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.828 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds