Wall clock time and date at job start Tue Mar 31 2020 01:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47345 * 2 1 4 4 C 1.50700 * 109.46777 * 120.00044 * 2 1 3 5 5 H 1.08005 * 119.99858 * 119.99854 * 4 2 1 6 6 C 1.37878 * 120.00028 * 299.99836 * 4 2 1 7 7 N 1.31510 * 119.99643 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99752 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47295 * 60.00103 * 8 6 4 10 10 H 1.48501 * 109.46746 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47181 * 299.99766 * 8 6 4 12 12 N 1.46508 * 109.47044 * 239.99845 * 2 1 3 13 13 C 1.46495 * 119.99769 * 300.00288 * 12 2 1 14 14 C 1.34774 * 119.99926 * 120.00182 * 12 2 1 15 15 O 1.21555 * 119.99921 * 4.34594 * 14 12 2 16 16 C 1.47845 * 119.99812 * 184.33870 * 14 12 2 17 17 C 1.39589 * 120.14816 * 320.30429 * 16 14 12 18 18 C 1.37934 * 119.85355 * 179.76473 * 17 16 14 19 19 C 1.38382 * 120.14559 * 0.51307 * 18 17 16 20 20 C 1.38339 * 120.29080 * 359.74037 * 19 18 17 21 21 N 1.48008 * 119.92779 * 179.97438 * 20 19 18 22 22 O 1.21798 * 120.00011 * 180.02562 * 21 20 19 23 23 O 1.21803 * 119.99992 * 0.02562 * 21 20 19 24 24 C 1.37976 * 120.14572 * 359.97438 * 20 19 18 25 25 H 1.09000 * 109.47345 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47094 * 300.00288 * 1 2 3 27 27 H 1.09002 * 109.46584 * 60.00151 * 1 2 3 28 28 H 0.97007 * 119.99493 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47189 * 271.69918 * 13 12 2 30 30 H 1.09004 * 109.47276 * 151.70231 * 13 12 2 31 31 H 1.09002 * 109.47504 * 31.70054 * 13 12 2 32 32 H 1.08004 * 120.07252 * 0.02562 * 17 16 14 33 33 H 1.08000 * 119.92849 * 180.25428 * 18 17 16 34 34 H 1.08002 * 119.85420 * 179.76232 * 19 18 17 35 35 H 1.08004 * 120.07390 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3224 -1.1196 4.0079 9 1 3.8073 -1.1191 4.0078 10 1 1.8278 -0.4192 5.2204 11 1 1.8279 -2.5198 4.0081 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7933 -0.0357 -2.0834 15 8 3.1522 1.1025 -1.8528 16 6 3.2068 -0.7017 -3.3369 17 6 3.5670 -2.0503 -3.3284 18 6 3.9471 -2.6669 -4.5022 19 6 3.9821 -1.9488 -5.6847 20 6 3.6314 -0.6107 -5.6990 21 7 3.6722 0.1498 -6.9682 22 8 3.3641 1.3281 -6.9822 23 8 4.0138 -0.4028 -7.9985 24 6 3.2436 0.0166 -4.5329 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 0.7089 1.1614 3.4844 29 1 2.3993 -2.7379 -0.9459 30 1 1.6533 -2.2929 -2.4995 31 1 0.6772 -2.2925 -1.0110 32 1 3.5440 -2.6108 -2.4054 33 1 4.2221 -3.7113 -4.4978 34 1 4.2841 -2.4353 -6.6004 35 1 2.9696 1.0612 -4.5455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:52 Heat of formation + Delta-G solvation = -18.427919 kcal Electronic energy + Delta-G solvation = -21252.896815 eV Core-core repulsion = 17833.220373 eV Total energy + Delta-G solvation = -3419.676442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.34622 -41.57228 -39.61944 -37.75200 -37.32903 -35.04099 -33.34092 -32.68249 -31.06962 -28.11321 -27.50128 -27.32715 -25.48403 -23.58069 -22.86454 -21.16013 -19.85959 -19.68342 -18.70070 -18.53276 -17.93956 -17.56744 -17.23639 -16.63065 -16.37763 -15.74823 -15.26269 -14.80713 -14.55404 -14.37019 -14.06054 -13.59183 -13.43376 -13.12051 -13.00472 -12.85828 -12.75252 -12.74535 -12.59205 -12.36338 -12.31956 -12.19751 -12.14694 -11.23399 -11.02845 -10.64057 -10.55191 -10.45213 -9.48033 -8.16267 -6.33432 -1.31878 -0.44403 0.20087 0.25492 1.42787 1.45281 1.52367 1.58140 2.05549 2.29220 2.44326 3.12658 3.21562 3.36100 3.59198 3.66461 3.80800 4.04040 4.29741 4.45324 4.59430 4.61941 4.71660 4.81727 4.83847 4.91299 4.97375 4.99702 5.07532 5.36673 5.40887 5.52631 5.61548 5.96131 6.10597 6.41664 6.61935 6.73083 7.12859 7.39049 8.88293 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033928 B = 0.004049 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.085467 B = 6913.070507 C = 7301.527923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.260 3.740 3 H 0.008 0.992 4 C -0.538 4.538 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.258 1.258 12 N -0.585 5.585 13 C 0.068 3.932 14 C 0.535 3.465 15 O -0.596 6.596 16 C -0.128 4.128 17 C -0.032 4.032 18 C -0.093 4.093 19 C -0.025 4.025 20 C -0.063 4.063 21 N 0.031 4.969 22 O -0.222 6.222 23 O -0.130 6.130 24 C -0.023 4.023 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.018 0.982 28 H 0.264 0.736 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.176 0.824 33 H 0.209 0.791 34 H 0.189 0.811 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.992 -14.581 -13.685 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.159 3.841 3 H 0.026 0.974 4 C -0.577 4.577 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.183 1.183 12 N -0.314 5.314 13 C -0.074 4.074 14 C 0.323 3.677 15 O -0.479 6.479 16 C -0.132 4.132 17 C -0.050 4.050 18 C -0.110 4.110 19 C -0.044 4.044 20 C -0.146 4.146 21 N 0.547 4.453 22 O -0.423 6.423 23 O -0.357 6.357 24 C -0.044 4.044 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.194 0.806 33 H 0.226 0.774 34 H 0.206 0.794 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.984 -14.144 -12.731 19.443 hybrid contribution 0.025 1.014 0.756 1.266 sum 4.009 -13.130 -11.975 18.217 Atomic orbital electron populations 1.21907 0.96863 1.00501 1.00035 1.18644 0.91764 0.92297 0.81439 0.97353 1.21519 1.32172 1.13287 0.90697 0.91356 1.25760 0.95004 0.95586 1.02158 1.70021 1.37249 1.23901 1.24570 0.85480 0.78376 0.79079 0.77911 1.20245 1.21357 1.18287 1.48165 1.47579 1.13714 1.21900 1.22320 1.02690 0.80082 1.02275 1.18725 0.79172 0.85612 0.84148 1.90758 1.57609 1.20928 1.78594 1.19760 1.05648 0.96120 0.91689 1.22506 0.89177 0.91154 1.02153 1.21758 0.97737 1.03088 0.88464 1.21747 0.91059 0.88760 1.02786 1.21067 1.15920 0.94701 0.82928 1.43843 0.97229 1.01080 1.03142 1.94607 1.54164 1.00186 1.93325 1.94458 1.47526 1.71340 1.22357 1.20810 0.92826 1.00829 0.89900 0.92784 0.91219 0.96304 0.92638 0.90380 0.88650 0.90638 0.80641 0.77367 0.79426 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 8.95 71.98 0.64 -5.60 16 2 C 0.26 13.02 2.63 44.25 0.12 13.14 16 3 H 0.01 0.52 6.91 -2.39 -0.02 0.50 16 4 C -0.54 -27.72 8.37 25.60 0.21 -27.51 16 5 H 0.07 3.30 7.60 -2.91 -0.02 3.28 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -51.78 11.32 21.45 0.24 -51.53 16 8 Si 0.97 41.17 29.54 68.60 2.03 43.20 16 9 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 12 N -0.58 -23.01 2.75 -830.19 -2.29 -25.30 16 13 C 0.07 1.77 8.14 127.77 1.04 2.81 16 14 C 0.54 21.55 7.35 86.79 0.64 22.19 16 15 O -0.60 -30.70 16.26 -3.89 -0.06 -30.76 16 16 C -0.13 -3.59 5.22 -20.09 -0.10 -3.69 16 17 C -0.03 -0.52 7.47 22.52 0.17 -0.35 16 18 C -0.09 -0.83 10.03 22.23 0.22 -0.61 16 19 C -0.02 -0.33 9.55 22.33 0.21 -0.11 16 20 C -0.06 -1.47 6.84 36.34 0.25 -1.22 16 21 N 0.03 0.86 4.45 -46.56 -0.21 0.65 16 22 O -0.22 -7.34 18.44 18.89 0.35 -6.99 16 23 O -0.13 -3.31 18.44 18.88 0.35 -2.96 16 24 C -0.02 -0.67 9.14 22.53 0.21 -0.46 16 25 H 0.05 2.21 6.67 -2.39 -0.02 2.20 16 26 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 27 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 29 H 0.08 1.72 7.23 -2.39 -0.02 1.71 16 30 H 0.10 1.76 5.38 -2.38 -0.01 1.75 16 31 H 0.07 2.04 6.43 -2.39 -0.02 2.02 16 32 H 0.18 2.29 5.55 -2.91 -0.02 2.28 16 33 H 0.21 -0.22 8.06 -2.91 -0.02 -0.24 16 34 H 0.19 1.36 7.60 -2.91 -0.02 1.34 16 35 H 0.13 4.43 7.60 -2.91 -0.02 4.41 16 Total: -1.00 -74.51 303.06 5.60 -68.91 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.13 Total: 4.98 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 4.06 Total: -0.20 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -2.25 Total: -76.18 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: 0.63 Total: -40.71 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -74.51 5.60 -68.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.486 kcal (2) G-P(sol) polarization free energy of solvation -74.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds