Wall clock time and date at job start Tue Mar 31 2020 01:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46819 * 2 1 4 4 C 1.50702 * 109.47099 * 239.99724 * 2 1 3 5 5 H 1.08000 * 119.99837 * 239.99974 * 4 2 1 6 6 C 1.37874 * 119.99846 * 59.72658 * 4 2 1 7 7 N 1.31505 * 120.00241 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99718 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46689 * 89.99739 * 8 6 4 10 10 H 1.48498 * 109.46913 * 210.00023 * 8 6 4 11 11 H 1.48501 * 109.47059 * 330.00306 * 8 6 4 12 12 N 1.46507 * 109.46825 * 119.99550 * 2 1 3 13 13 C 1.46498 * 119.99796 * 60.00403 * 12 2 1 14 14 C 1.34774 * 119.99936 * 239.99629 * 12 2 1 15 15 O 1.21551 * 119.99934 * 7.00389 * 14 12 2 16 16 C 1.47845 * 119.99907 * 186.99499 * 14 12 2 17 17 C 1.39594 * 120.14284 * 20.28979 * 16 14 12 18 18 C 1.37940 * 119.84986 * 179.76819 * 17 16 14 19 19 C 1.38379 * 120.14603 * 0.50843 * 18 17 16 20 20 C 1.38340 * 120.29111 * 359.74593 * 19 18 17 21 21 N 1.48013 * 119.92364 * 179.97438 * 20 19 18 22 22 O 1.21803 * 119.99834 * 180.02562 * 21 20 19 23 23 O 1.21799 * 120.00439 * 0.02562 * 21 20 19 24 24 C 1.37979 * 120.14786 * 359.97438 * 20 19 18 25 25 H 1.09006 * 109.47329 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47231 * 300.00340 * 1 2 3 27 27 H 1.09003 * 109.47332 * 60.00392 * 1 2 3 28 28 H 0.97007 * 120.00035 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47309 * 85.95357 * 13 12 2 30 30 H 1.08994 * 109.47102 * 205.95497 * 13 12 2 31 31 H 1.08997 * 109.47367 * 325.95481 * 13 12 2 32 32 H 1.07997 * 120.07338 * 0.02562 * 17 16 14 33 33 H 1.07997 * 119.92571 * 180.25913 * 18 17 16 34 34 H 1.07998 * 119.85523 * 179.77077 * 19 18 17 35 35 H 1.07993 * 120.07477 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6946 -0.2428 -2.4827 7 7 0.9337 0.8230 -2.6034 8 14 2.3178 -1.1231 -4.0079 9 1 1.3433 -2.1695 -4.4083 10 1 2.4763 -0.1449 -5.1139 11 1 3.6293 -1.7545 -3.7137 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 2.9825 1.1587 1.9595 16 6 3.4127 -0.7696 3.2073 17 6 3.5652 -2.1555 3.1401 18 6 4.1484 -2.8337 4.1902 19 6 4.5723 -2.1446 5.3128 20 6 4.4192 -0.7717 5.3879 21 7 4.8750 -0.0428 6.5928 22 8 4.7405 1.1659 6.6606 23 8 5.3845 -0.6515 7.5165 24 6 3.8427 -0.0805 4.3421 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.6964 1.1523 -3.4845 29 1 2.3755 -2.7375 0.9114 30 1 1.6938 -2.3033 2.4972 31 1 0.6604 -2.2821 1.0482 32 1 3.2311 -2.6950 2.2662 33 1 4.2708 -3.9055 4.1377 34 1 5.0249 -2.6808 6.1338 35 1 3.7242 0.9913 4.4019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094041.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:55 Heat of formation + Delta-G solvation = 13.321274 kcal Electronic energy + Delta-G solvation = -21266.787281 eV Core-core repulsion = 17848.487588 eV Total energy + Delta-G solvation = -3418.299693 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.26227 -40.39296 -38.34847 -36.63470 -35.74694 -33.47179 -32.07787 -31.64456 -29.40185 -27.14260 -26.27045 -25.37329 -24.22812 -22.57903 -21.39097 -19.85607 -18.74859 -18.46757 -17.60715 -16.98095 -16.67507 -16.20551 -15.65591 -15.23370 -14.72990 -14.61903 -14.24338 -13.42369 -13.32239 -13.07622 -12.66705 -12.47111 -12.05154 -11.70915 -11.62705 -11.40231 -11.25306 -11.20896 -11.13455 -10.87498 -10.84263 -10.41471 -10.29764 -9.76231 -9.56802 -9.39259 -9.29313 -8.57000 -7.87072 -6.20396 -4.30096 -0.29569 0.50318 1.19629 1.27959 2.74563 3.17348 3.25269 3.26795 3.50110 3.57860 4.21669 4.24444 4.31807 4.53120 4.61310 4.68644 4.97625 5.11218 5.27816 5.36669 5.47934 5.67136 5.69382 5.79797 5.95588 6.02015 6.32321 6.61118 6.66657 6.88443 7.17928 7.31035 7.55471 7.55995 7.84790 8.00637 8.24521 8.57901 8.76820 9.37012 10.84793 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031821 B = 0.004074 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.711374 B = 6870.898758 C = 7196.108496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.580 5.580 13 C 0.069 3.931 14 C 0.544 3.456 15 O -0.536 6.536 16 C -0.116 4.116 17 C -0.060 4.060 18 C -0.127 4.127 19 C -0.044 4.044 20 C -0.056 4.056 21 N 0.031 4.969 22 O -0.157 6.157 23 O -0.165 6.165 24 C -0.004 4.004 25 H 0.031 0.969 26 H 0.013 0.987 27 H 0.097 0.903 28 H 0.265 0.735 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.173 0.827 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.194 -10.035 11.810 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.159 3.841 3 H 0.084 0.916 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.074 4.074 14 C 0.330 3.670 15 O -0.415 6.415 16 C -0.120 4.120 17 C -0.078 4.078 18 C -0.145 4.145 19 C -0.063 4.063 20 C -0.139 4.139 21 N 0.550 4.450 22 O -0.373 6.373 23 O -0.380 6.380 24 C -0.024 4.024 25 H 0.050 0.950 26 H 0.032 0.968 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.190 0.810 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.954 -9.625 10.974 14.893 hybrid contribution 0.434 -0.391 -0.546 0.800 sum 3.388 -10.016 10.428 14.851 Atomic orbital electron populations 1.22110 0.97869 0.99517 1.01202 1.19075 0.91235 0.94573 0.79253 0.91583 1.21255 1.32313 1.13325 0.90117 0.92198 1.24888 0.94791 0.94933 0.99028 1.69865 1.35735 1.22608 1.24023 0.86462 0.79162 0.79311 0.82272 1.20530 1.20987 1.19912 1.48190 1.47957 1.11692 1.23207 1.22213 1.02266 0.83482 0.99475 1.17932 0.80164 0.86909 0.81974 1.90783 1.61891 1.14146 1.74661 1.20301 1.02158 0.93997 0.95586 1.22986 0.91145 0.93755 0.99877 1.21229 0.99451 1.01266 0.92587 1.21209 0.94874 0.90957 0.99259 1.20982 1.11254 0.93009 0.88644 1.43588 0.98232 1.01244 1.01909 1.94578 1.59775 0.96226 1.86765 1.94509 1.43985 1.69466 1.30050 1.21126 0.89710 1.02513 0.89054 0.94986 0.96766 0.88496 0.92473 0.92083 0.91728 0.90338 0.80979 0.83028 0.82860 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.94 37.16 0.33 -3.01 16 2 C 0.26 6.18 2.64 -69.08 -0.18 6.00 16 3 H 0.07 1.86 6.92 -51.93 -0.36 1.50 16 4 C -0.53 -13.44 8.37 -34.44 -0.29 -13.72 16 5 H 0.06 1.46 7.53 -52.49 -0.40 1.07 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -23.97 11.30 55.43 0.63 -23.34 16 8 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 N -0.58 -11.26 2.75 -176.38 -0.49 -11.75 16 13 C 0.07 0.96 7.92 59.85 0.47 1.44 16 14 C 0.54 10.57 7.52 -12.33 -0.09 10.48 16 15 O -0.54 -12.62 15.88 5.32 0.08 -12.53 16 16 C -0.12 -1.70 5.57 -104.97 -0.58 -2.28 16 17 C -0.06 -0.64 7.61 -39.18 -0.30 -0.94 16 18 C -0.13 -1.03 10.03 -39.64 -0.40 -1.43 16 19 C -0.04 -0.42 9.55 -39.49 -0.38 -0.80 16 20 C -0.06 -0.72 6.85 -80.01 -0.55 -1.26 16 21 N 0.03 0.45 4.45 33.93 0.15 0.60 16 22 O -0.16 -2.47 18.44 -29.46 -0.54 -3.02 16 23 O -0.17 -2.34 18.44 -29.46 -0.54 -2.88 16 24 C 0.00 -0.06 9.09 -39.18 -0.36 -0.41 16 25 H 0.03 0.65 6.68 -51.93 -0.35 0.30 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.10 2.42 6.05 -51.93 -0.31 2.11 16 28 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.06 0.77 6.90 -51.93 -0.36 0.41 16 30 H 0.06 0.70 5.22 -51.93 -0.27 0.43 16 31 H 0.08 1.12 6.44 -51.93 -0.33 0.79 16 32 H 0.17 1.63 4.04 -52.49 -0.21 1.42 16 33 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.15 1.14 7.60 -52.49 -0.40 0.75 16 35 H 0.16 2.48 7.34 -52.49 -0.39 2.10 16 LS Contribution 300.75 15.07 4.53 4.53 Total: -1.00 -30.54 300.75 -6.97 -37.50 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -3.36 Total: 0.23 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.41 Total: -4.31 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.29 Total: -34.49 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -1.00 Total: -18.43 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.54 -6.97 -37.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094041.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.825 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds