Wall clock time and date at job start Tue Mar 31 2020 01:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46819 * 2 1 4 4 C 1.50702 * 109.47099 * 239.99724 * 2 1 3 5 5 H 1.08000 * 119.99837 * 239.99974 * 4 2 1 6 6 C 1.37874 * 119.99846 * 59.72658 * 4 2 1 7 7 N 1.31505 * 120.00241 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99718 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46689 * 89.99739 * 8 6 4 10 10 H 1.48498 * 109.46913 * 210.00023 * 8 6 4 11 11 H 1.48501 * 109.47059 * 330.00306 * 8 6 4 12 12 N 1.46507 * 109.46825 * 119.99550 * 2 1 3 13 13 C 1.46498 * 119.99796 * 60.00403 * 12 2 1 14 14 C 1.34774 * 119.99936 * 239.99629 * 12 2 1 15 15 O 1.21551 * 119.99934 * 7.00389 * 14 12 2 16 16 C 1.47845 * 119.99907 * 186.99499 * 14 12 2 17 17 C 1.39594 * 120.14284 * 20.28979 * 16 14 12 18 18 C 1.37940 * 119.84986 * 179.76819 * 17 16 14 19 19 C 1.38379 * 120.14603 * 0.50843 * 18 17 16 20 20 C 1.38340 * 120.29111 * 359.74593 * 19 18 17 21 21 N 1.48013 * 119.92364 * 179.97438 * 20 19 18 22 22 O 1.21803 * 119.99834 * 180.02562 * 21 20 19 23 23 O 1.21799 * 120.00439 * 0.02562 * 21 20 19 24 24 C 1.37979 * 120.14786 * 359.97438 * 20 19 18 25 25 H 1.09006 * 109.47329 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47231 * 300.00340 * 1 2 3 27 27 H 1.09003 * 109.47332 * 60.00392 * 1 2 3 28 28 H 0.97007 * 120.00035 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47309 * 85.95357 * 13 12 2 30 30 H 1.08994 * 109.47102 * 205.95497 * 13 12 2 31 31 H 1.08997 * 109.47367 * 325.95481 * 13 12 2 32 32 H 1.07997 * 120.07338 * 0.02562 * 17 16 14 33 33 H 1.07997 * 119.92571 * 180.25913 * 18 17 16 34 34 H 1.07998 * 119.85523 * 179.77077 * 19 18 17 35 35 H 1.07993 * 120.07477 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6946 -0.2428 -2.4827 7 7 0.9337 0.8230 -2.6034 8 14 2.3178 -1.1231 -4.0079 9 1 1.3433 -2.1695 -4.4083 10 1 2.4763 -0.1449 -5.1139 11 1 3.6293 -1.7545 -3.7137 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 2.9825 1.1587 1.9595 16 6 3.4127 -0.7696 3.2073 17 6 3.5652 -2.1555 3.1401 18 6 4.1484 -2.8337 4.1902 19 6 4.5723 -2.1446 5.3128 20 6 4.4192 -0.7717 5.3879 21 7 4.8750 -0.0428 6.5928 22 8 4.7405 1.1659 6.6606 23 8 5.3845 -0.6515 7.5165 24 6 3.8427 -0.0805 4.3421 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.6964 1.1523 -3.4845 29 1 2.3755 -2.7375 0.9114 30 1 1.6938 -2.3033 2.4972 31 1 0.6604 -2.2821 1.0482 32 1 3.2311 -2.6950 2.2662 33 1 4.2708 -3.9055 4.1377 34 1 5.0249 -2.6808 6.1338 35 1 3.7242 0.9913 4.4019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094041.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:54 Heat of formation + Delta-G solvation = -5.258606 kcal Electronic energy + Delta-G solvation = -21267.592965 eV Core-core repulsion = 17848.487588 eV Total energy + Delta-G solvation = -3419.105377 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.35000 -41.63634 -39.59224 -37.75550 -37.38621 -35.13401 -33.35735 -32.64761 -31.05374 -28.36224 -27.41731 -27.32571 -25.44948 -23.54789 -22.85449 -21.19487 -19.90589 -19.74022 -18.70369 -18.51990 -18.00926 -17.44342 -17.22039 -16.52017 -16.33654 -15.85046 -15.24542 -14.86543 -14.55322 -14.47546 -14.02053 -13.67799 -13.49006 -13.09475 -13.01045 -12.77891 -12.74714 -12.72077 -12.45077 -12.36715 -12.25454 -12.17257 -12.06538 -11.20922 -11.00899 -10.62399 -10.54228 -10.48604 -9.46680 -8.16327 -6.33838 -1.31677 -0.49376 0.20199 0.25804 1.42853 1.44948 1.54082 1.61824 2.08451 2.35557 2.44600 3.12649 3.21555 3.36905 3.58304 3.68077 3.80790 4.03641 4.27215 4.47092 4.58576 4.60674 4.70320 4.81012 4.84937 4.91495 4.98147 5.00218 5.07571 5.37075 5.41679 5.53584 5.61917 5.97454 6.10438 6.41617 6.62242 6.73247 7.13270 7.39106 8.88356 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031821 B = 0.004074 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.711374 B = 6870.898758 C = 7196.108496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.261 3.739 3 H 0.008 0.992 4 C -0.538 4.538 5 H 0.070 0.930 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.291 1.291 11 H -0.267 1.267 12 N -0.586 5.586 13 C 0.059 3.941 14 C 0.535 3.465 15 O -0.598 6.598 16 C -0.134 4.134 17 C -0.046 4.046 18 C -0.096 4.096 19 C -0.024 4.024 20 C -0.066 4.066 21 N 0.031 4.969 22 O -0.222 6.222 23 O -0.130 6.130 24 C -0.019 4.019 25 H 0.054 0.946 26 H 0.016 0.984 27 H 0.069 0.931 28 H 0.264 0.736 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.193 0.807 33 H 0.210 0.790 34 H 0.188 0.812 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -15.212 12.629 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.159 3.841 3 H 0.026 0.974 4 C -0.576 4.576 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.191 1.191 10 H -0.217 1.217 11 H -0.191 1.191 12 N -0.314 5.314 13 C -0.082 4.082 14 C 0.323 3.677 15 O -0.481 6.481 16 C -0.138 4.138 17 C -0.064 4.064 18 C -0.113 4.113 19 C -0.043 4.043 20 C -0.149 4.149 21 N 0.547 4.453 22 O -0.423 6.423 23 O -0.357 6.357 24 C -0.040 4.040 25 H 0.073 0.927 26 H 0.035 0.965 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.095 0.905 32 H 0.209 0.791 33 H 0.227 0.773 34 H 0.205 0.795 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.893 -14.724 11.775 19.251 hybrid contribution 0.181 1.076 -0.695 1.294 sum 4.074 -13.648 11.080 18.046 Atomic orbital electron populations 1.21907 0.96982 1.00501 0.99981 1.18644 0.91874 0.92269 0.81295 0.97442 1.21555 1.32092 1.13403 0.90575 0.91136 1.25763 0.94989 0.95581 1.02182 1.70029 1.37055 1.24168 1.24508 0.85412 0.78999 0.78142 0.78199 1.19139 1.21725 1.19119 1.48118 1.47736 1.13799 1.21797 1.22624 1.02790 0.80304 1.02436 1.18701 0.79571 0.86532 0.82851 1.90740 1.63965 1.17100 1.76329 1.19803 1.04416 0.95637 0.93928 1.23219 0.90345 0.91476 1.01377 1.21819 0.96017 1.03466 0.90041 1.21776 0.92892 0.89007 1.00593 1.21087 1.12219 0.94158 0.87467 1.43848 0.97910 1.01143 1.02384 1.94609 1.62787 0.97213 1.87736 1.94453 1.42007 1.69058 1.30160 1.20875 0.91289 1.01514 0.90291 0.92706 0.96454 0.91236 0.92650 0.89710 0.87878 0.90470 0.79074 0.77320 0.79468 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.26 8.94 71.98 0.64 -5.62 16 2 C 0.26 12.96 2.64 44.24 0.12 13.08 16 3 H 0.01 0.46 6.92 -2.39 -0.02 0.45 16 4 C -0.54 -27.32 8.37 25.60 0.21 -27.10 16 5 H 0.07 3.34 7.53 -2.91 -0.02 3.32 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -51.49 11.30 21.44 0.24 -51.25 16 8 Si 0.97 40.77 29.54 68.60 2.03 42.79 16 9 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 10 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 12 N -0.59 -22.81 2.75 -830.24 -2.29 -25.10 16 13 C 0.06 1.48 7.92 127.77 1.01 2.49 16 14 C 0.53 21.60 7.52 86.79 0.65 22.25 16 15 O -0.60 -30.77 15.88 -3.88 -0.06 -30.83 16 16 C -0.13 -3.80 5.57 -20.09 -0.11 -3.92 16 17 C -0.05 -0.78 7.61 22.53 0.17 -0.61 16 18 C -0.10 -0.89 10.03 22.23 0.22 -0.67 16 19 C -0.02 -0.33 9.55 22.33 0.21 -0.11 16 20 C -0.07 -1.58 6.85 36.34 0.25 -1.33 16 21 N 0.03 0.88 4.45 -46.55 -0.21 0.67 16 22 O -0.22 -7.48 18.44 18.88 0.35 -7.13 16 23 O -0.13 -3.35 18.44 18.89 0.35 -3.00 16 24 C -0.02 -0.57 9.09 22.53 0.20 -0.36 16 25 H 0.05 2.22 6.68 -2.38 -0.02 2.21 16 26 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 3.62 6.05 -2.39 -0.01 3.61 16 28 H 0.26 14.10 8.31 -92.70 -0.77 13.33 16 29 H 0.08 1.75 6.90 -2.39 -0.02 1.73 16 30 H 0.10 1.77 5.22 -2.39 -0.01 1.76 16 31 H 0.08 1.98 6.44 -2.39 -0.02 1.96 16 32 H 0.19 2.51 4.04 -2.91 -0.01 2.50 16 33 H 0.21 -0.18 8.06 -2.91 -0.02 -0.20 16 34 H 0.19 1.44 7.60 -2.91 -0.02 1.42 16 35 H 0.13 4.60 7.34 -2.91 -0.02 4.58 16 Total: -1.00 -74.55 300.75 5.59 -68.96 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.14 Total: 5.57 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 4.04 Total: -0.68 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -2.25 Total: -75.67 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: 0.63 Total: -40.97 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.79 kcal Total: -74.55 5.59 -68.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094041.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.702 kcal (2) G-P(sol) polarization free energy of solvation -74.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds