Wall clock time and date at job start Tue Mar 31 2020 01:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47039 * 2 1 4 4 C 1.50693 * 109.46910 * 120.00107 * 2 1 3 5 5 H 1.08006 * 120.00518 * 119.99842 * 4 2 1 6 6 C 1.37881 * 119.99993 * 299.99863 * 4 2 1 7 7 N 1.31522 * 119.99632 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00084 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46982 * 90.00139 * 8 6 4 10 10 H 1.48496 * 109.47097 * 209.99736 * 8 6 4 11 11 H 1.48499 * 109.46878 * 330.00263 * 8 6 4 12 12 N 1.46502 * 109.46937 * 239.99994 * 2 1 3 13 13 C 1.46501 * 120.00090 * 300.00282 * 12 2 1 14 14 C 1.34772 * 119.99938 * 120.00160 * 12 2 1 15 15 O 1.21556 * 120.00154 * 4.31064 * 14 12 2 16 16 C 1.47846 * 120.00130 * 184.30587 * 14 12 2 17 17 C 1.39571 * 120.14581 * 148.06527 * 16 14 12 18 18 C 1.37951 * 119.85573 * 180.02562 * 17 16 14 19 19 C 1.38364 * 120.14482 * 359.97438 * 18 17 16 20 20 N 1.48012 * 119.85479 * 179.97438 * 19 18 17 21 21 O 1.21802 * 120.00278 * 0.02562 * 20 19 18 22 22 O 1.21803 * 120.00155 * 179.72371 * 20 19 18 23 23 C 1.38355 * 120.28849 * 0.25602 * 19 18 17 24 24 C 1.37953 * 120.14767 * 359.49164 * 23 19 18 25 25 H 1.09005 * 109.46953 * 59.99666 * 1 2 3 26 26 H 1.09001 * 109.47519 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46943 * 300.00212 * 1 2 3 28 28 H 0.97001 * 119.99522 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46940 * 274.52505 * 13 12 2 30 30 H 1.09004 * 109.47211 * 34.52266 * 13 12 2 31 31 H 1.08998 * 109.47137 * 154.52513 * 13 12 2 32 32 H 1.08007 * 120.07314 * 0.02562 * 17 16 14 33 33 H 1.08003 * 119.93173 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.92470 * 179.72555 * 23 19 18 35 35 H 1.08004 * 120.07825 * 180.23562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0833 15 8 3.1517 1.1028 -1.8531 16 6 3.2073 -0.7019 -3.3366 17 6 3.3956 0.0469 -4.4993 18 6 3.7816 -0.5809 -5.6654 19 6 3.9824 -1.9498 -5.6840 20 7 4.3959 -2.6169 -6.9389 21 8 4.5591 -1.9610 -7.9522 22 8 4.5784 -3.8210 -6.9570 23 6 3.7928 -2.6985 -4.5361 24 6 3.4120 -2.0823 -3.3620 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.9031 -0.5281 4.4375 29 1 2.3705 -2.7375 -0.9043 30 1 0.6570 -2.2800 -1.0559 31 1 1.7021 -2.3056 -2.4965 32 1 3.2396 1.1156 -4.4860 33 1 3.9273 -0.0027 -6.5660 34 1 3.9470 -3.7672 -4.5583 35 1 3.2680 -2.6673 -2.4656 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094196.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:59 Heat of formation + Delta-G solvation = 17.863064 kcal Electronic energy + Delta-G solvation = -21199.444945 eV Core-core repulsion = 17781.342199 eV Total energy + Delta-G solvation = -3418.102747 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.36567 -40.52583 -38.50933 -36.74877 -35.93864 -33.43503 -32.18555 -31.75297 -30.29252 -27.21196 -26.71180 -25.29296 -23.55021 -23.21868 -21.48162 -19.65234 -19.18018 -18.84022 -17.71432 -17.49032 -16.62465 -16.32022 -15.40956 -15.30743 -15.12276 -14.60175 -14.10147 -13.90480 -13.34044 -13.11805 -13.03431 -12.65688 -12.39903 -12.10746 -11.91059 -11.74966 -11.48500 -11.36049 -11.31897 -11.29137 -10.81917 -10.29696 -9.93162 -9.73326 -9.64306 -9.58140 -9.38925 -8.77621 -8.05934 -6.28321 -4.30797 -0.50911 0.67007 0.99924 1.18715 2.64054 3.12601 3.24348 3.27582 3.28749 3.39453 4.09671 4.18931 4.22148 4.39126 4.61032 4.64606 4.94355 5.04223 5.25684 5.35706 5.42781 5.47403 5.68701 5.76957 5.91055 5.95649 6.05120 6.13054 6.22636 6.26712 6.64271 6.86178 7.03198 7.42616 7.44743 7.83159 8.23947 8.45772 8.71089 9.31050 10.84073 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040479 B = 0.003900 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.552121 B = 7177.313032 C = 7495.299956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.229 3.771 3 H 0.066 0.934 4 C -0.533 4.533 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.292 1.292 11 H -0.263 1.263 12 N -0.571 5.571 13 C 0.063 3.937 14 C 0.540 3.460 15 O -0.534 6.534 16 C -0.063 4.063 17 C -0.069 4.069 18 C -0.062 4.062 19 C -0.036 4.036 20 N 0.029 4.971 21 O -0.162 6.162 22 O -0.160 6.160 23 C -0.062 4.062 24 C -0.102 4.102 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.268 0.732 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 -2.792 -15.524 15.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.128 3.872 3 H 0.083 0.917 4 C -0.571 4.571 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.528 5.528 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.219 1.219 11 H -0.188 1.188 12 N -0.301 5.301 13 C -0.080 4.080 14 C 0.326 3.674 15 O -0.412 6.412 16 C -0.067 4.067 17 C -0.088 4.088 18 C -0.081 4.081 19 C -0.119 4.119 20 N 0.548 4.452 21 O -0.378 6.378 22 O -0.376 6.376 23 C -0.081 4.081 24 C -0.120 4.120 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.174 0.826 33 H 0.175 0.825 34 H 0.176 0.824 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.646 -1.880 -14.544 14.679 hybrid contribution -0.488 0.415 -0.003 0.641 sum -1.134 -1.465 -14.547 14.665 Atomic orbital electron populations 1.22481 0.98727 1.01327 0.99580 1.19410 0.90185 0.95242 0.82347 0.91663 1.21078 1.33237 1.14468 0.88317 0.90244 1.24857 0.95572 0.96572 0.95572 1.69864 1.44790 1.40037 0.98066 0.86921 0.80432 0.83717 0.77685 1.20273 1.21938 1.18815 1.47853 1.47967 1.11884 1.22391 1.22321 1.02685 0.82741 1.00210 1.18071 0.80124 0.86205 0.83018 1.90791 1.55238 1.18025 1.77159 1.20750 0.96552 0.94052 0.95326 1.21294 0.96269 1.01502 0.89731 1.21000 0.95393 0.91493 1.00262 1.21318 1.11507 0.93823 0.85212 1.43664 0.97927 1.01040 1.02586 1.94537 1.54853 1.65291 1.23094 1.94541 1.54267 0.97021 1.91765 1.21047 0.95131 1.01908 0.90033 1.22175 0.96808 0.94097 0.98944 0.94684 0.92322 0.92791 0.92238 0.91518 0.90394 0.91122 0.82560 0.82499 0.82397 0.81164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 8.64 37.16 0.32 -2.89 16 2 C 0.23 5.09 2.23 -69.08 -0.15 4.94 16 3 H 0.07 1.62 5.96 -51.93 -0.31 1.31 16 4 C -0.53 -13.81 8.95 -34.44 -0.31 -14.12 16 5 H 0.08 2.20 7.76 -52.48 -0.41 1.80 16 6 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 7 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 8 Si 0.88 20.71 24.37 -169.99 -4.14 16.57 16 9 H -0.28 -6.18 6.87 56.52 0.39 -5.79 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.26 -6.06 6.53 56.52 0.37 -5.69 16 12 N -0.57 -10.44 2.75 -176.37 -0.49 -10.93 16 13 C 0.06 0.87 8.08 59.85 0.48 1.35 16 14 C 0.54 9.61 7.44 -12.33 -0.09 9.52 16 15 O -0.53 -11.48 16.09 5.32 0.09 -11.40 16 16 C -0.06 -0.83 5.47 -104.97 -0.57 -1.40 16 17 C -0.07 -0.77 9.60 -39.19 -0.38 -1.14 16 18 C -0.06 -0.63 9.54 -39.64 -0.38 -1.01 16 19 C -0.04 -0.39 6.86 -79.86 -0.55 -0.94 16 20 N 0.03 0.36 4.45 34.01 0.15 0.51 16 21 O -0.16 -2.14 18.43 -29.46 -0.54 -2.68 16 22 O -0.16 -2.10 18.43 -29.46 -0.54 -2.65 16 23 C -0.06 -0.61 9.54 -39.64 -0.38 -0.99 16 24 C -0.10 -1.08 7.44 -39.19 -0.29 -1.38 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.06 6.69 -51.93 -0.35 0.71 16 27 H 0.05 1.12 3.27 -51.93 -0.17 0.96 16 28 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 30 H 0.08 1.06 6.44 -51.93 -0.33 0.73 16 31 H 0.07 0.73 4.72 -51.93 -0.25 0.49 16 32 H 0.16 1.63 7.96 -52.48 -0.42 1.21 16 33 H 0.16 1.28 7.60 -52.48 -0.40 0.88 16 34 H 0.16 1.25 7.60 -52.49 -0.40 0.86 16 35 H 0.17 1.64 4.81 -52.48 -0.25 1.39 16 LS Contribution 294.80 15.07 4.44 4.44 Total: -1.00 -31.24 294.80 -5.92 -37.16 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -3.26 Total: -0.05 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -2.39 Total: -6.05 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.44 Total: -35.33 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -1.00 Total: -16.73 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.14 Total: 16.57 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.24 -5.92 -37.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094196.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.020 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds