Wall clock time and date at job start Tue Mar 31 2020 01:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47039 * 2 1 4 4 C 1.50693 * 109.46910 * 120.00107 * 2 1 3 5 5 H 1.08006 * 120.00518 * 119.99842 * 4 2 1 6 6 C 1.37881 * 119.99993 * 299.99863 * 4 2 1 7 7 N 1.31522 * 119.99632 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00084 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46982 * 90.00139 * 8 6 4 10 10 H 1.48496 * 109.47097 * 209.99736 * 8 6 4 11 11 H 1.48499 * 109.46878 * 330.00263 * 8 6 4 12 12 N 1.46502 * 109.46937 * 239.99994 * 2 1 3 13 13 C 1.46501 * 120.00090 * 300.00282 * 12 2 1 14 14 C 1.34772 * 119.99938 * 120.00160 * 12 2 1 15 15 O 1.21556 * 120.00154 * 4.31064 * 14 12 2 16 16 C 1.47846 * 120.00130 * 184.30587 * 14 12 2 17 17 C 1.39571 * 120.14581 * 148.06527 * 16 14 12 18 18 C 1.37951 * 119.85573 * 180.02562 * 17 16 14 19 19 C 1.38364 * 120.14482 * 359.97438 * 18 17 16 20 20 N 1.48012 * 119.85479 * 179.97438 * 19 18 17 21 21 O 1.21802 * 120.00278 * 0.02562 * 20 19 18 22 22 O 1.21803 * 120.00155 * 179.72371 * 20 19 18 23 23 C 1.38355 * 120.28849 * 0.25602 * 19 18 17 24 24 C 1.37953 * 120.14767 * 359.49164 * 23 19 18 25 25 H 1.09005 * 109.46953 * 59.99666 * 1 2 3 26 26 H 1.09001 * 109.47519 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46943 * 300.00212 * 1 2 3 28 28 H 0.97001 * 119.99522 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46940 * 274.52505 * 13 12 2 30 30 H 1.09004 * 109.47211 * 34.52266 * 13 12 2 31 31 H 1.08998 * 109.47137 * 154.52513 * 13 12 2 32 32 H 1.08007 * 120.07314 * 0.02562 * 17 16 14 33 33 H 1.08003 * 119.93173 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.92470 * 179.72555 * 23 19 18 35 35 H 1.08004 * 120.07825 * 180.23562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0833 15 8 3.1517 1.1028 -1.8531 16 6 3.2073 -0.7019 -3.3366 17 6 3.3956 0.0469 -4.4993 18 6 3.7816 -0.5809 -5.6654 19 6 3.9824 -1.9498 -5.6840 20 7 4.3959 -2.6169 -6.9389 21 8 4.5591 -1.9610 -7.9522 22 8 4.5784 -3.8210 -6.9570 23 6 3.7928 -2.6985 -4.5361 24 6 3.4120 -2.0823 -3.3620 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.9031 -0.5281 4.4375 29 1 2.3705 -2.7375 -0.9043 30 1 0.6570 -2.2800 -1.0559 31 1 1.7021 -2.3056 -2.4965 32 1 3.2396 1.1156 -4.4860 33 1 3.9273 -0.0027 -6.5660 34 1 3.9470 -3.7672 -4.5583 35 1 3.2680 -2.6673 -2.4656 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094196.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:58 Heat of formation + Delta-G solvation = -1.720957 kcal Electronic energy + Delta-G solvation = -21200.294172 eV Core-core repulsion = 17781.342199 eV Total energy + Delta-G solvation = -3418.951973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.31499 -41.70316 -39.67433 -37.72381 -37.47950 -35.06325 -33.59618 -32.69805 -31.75875 -28.31171 -27.87645 -27.17877 -24.69688 -24.14061 -22.82932 -20.74128 -20.43847 -19.80088 -19.04693 -18.65283 -18.24010 -17.75219 -16.85054 -16.53973 -16.13494 -15.80475 -15.38954 -14.98686 -14.84578 -14.36341 -14.28079 -14.10433 -13.95797 -13.58055 -13.12803 -13.06780 -12.78098 -12.70297 -12.40051 -12.31535 -12.20917 -12.07109 -11.62212 -11.39271 -11.07417 -10.81933 -10.68538 -10.43425 -9.56824 -8.36986 -6.42346 -1.47425 -0.15559 0.00555 0.26456 1.25892 1.35911 1.43239 1.50389 1.96588 2.26012 2.27779 2.98422 3.21229 3.28951 3.39950 3.70157 3.76651 4.11766 4.25699 4.38400 4.49278 4.52575 4.57657 4.58593 4.60844 4.66874 4.86885 4.89302 5.01162 5.04847 5.26037 5.32350 5.40991 5.59024 6.13024 6.44133 6.50029 6.61108 7.01541 7.24898 8.78622 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040479 B = 0.003900 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.552121 B = 7177.313032 C = 7495.299956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.231 3.769 3 H 0.036 0.964 4 C -0.528 4.528 5 H 0.049 0.951 6 C 0.025 3.975 7 N -0.937 5.937 8 Si 0.938 3.062 9 H -0.253 1.253 10 H -0.298 1.298 11 H -0.260 1.260 12 N -0.580 5.580 13 C 0.057 3.943 14 C 0.537 3.463 15 O -0.581 6.581 16 C -0.076 4.076 17 C -0.065 4.065 18 C -0.050 4.050 19 C -0.040 4.040 20 N 0.029 4.971 21 O -0.173 6.173 22 O -0.167 6.167 23 C -0.048 4.048 24 C -0.094 4.094 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.268 0.732 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.161 0.839 33 H 0.178 0.822 34 H 0.182 0.818 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.583 -3.249 -17.498 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.128 3.872 3 H 0.054 0.946 4 C -0.566 4.566 5 H 0.068 0.932 6 C -0.174 4.174 7 N -0.576 5.576 8 Si 0.766 3.234 9 H -0.179 1.179 10 H -0.226 1.226 11 H -0.184 1.184 12 N -0.308 5.308 13 C -0.084 4.084 14 C 0.325 3.675 15 O -0.463 6.463 16 C -0.080 4.080 17 C -0.084 4.084 18 C -0.069 4.069 19 C -0.122 4.122 20 N 0.546 4.454 21 O -0.387 6.387 22 O -0.383 6.383 23 C -0.067 4.067 24 C -0.112 4.112 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.179 0.821 33 H 0.195 0.805 34 H 0.199 0.801 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.637 -2.373 -16.565 16.814 hybrid contribution -0.080 0.488 0.536 0.729 sum -1.717 -1.886 -16.029 16.230 Atomic orbital electron populations 1.22341 0.96238 1.02640 1.00213 1.19065 0.92022 0.93576 0.82571 0.94618 1.21323 1.31991 1.13323 0.90006 0.93238 1.25622 0.97083 0.99368 0.95363 1.69995 1.46946 1.42062 0.98647 0.86018 0.79940 0.80273 0.77208 1.17872 1.22574 1.18438 1.47864 1.48090 1.13531 1.21343 1.22611 1.02778 0.80108 1.02873 1.18700 0.78991 0.85747 0.84064 1.90757 1.56893 1.20238 1.78398 1.20408 0.98860 0.95063 0.93629 1.21326 0.95928 1.01743 0.89394 1.21140 0.94054 0.91283 1.00433 1.21499 1.11626 0.94273 0.84849 1.43845 0.97676 1.00982 1.02904 1.94539 1.55269 1.65236 1.23679 1.94539 1.54478 0.97332 1.91924 1.21237 0.93594 1.02946 0.88945 1.22193 0.96409 0.92969 0.99659 0.92248 0.90731 0.93824 0.92232 0.91511 0.90058 0.87256 0.82094 0.80478 0.80082 0.80065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.86 8.64 71.98 0.62 -5.24 16 2 C 0.23 10.19 2.23 44.24 0.10 10.29 16 3 H 0.04 1.80 5.96 -2.39 -0.01 1.79 16 4 C -0.53 -27.84 8.95 25.60 0.23 -27.61 16 5 H 0.05 2.83 7.76 -2.91 -0.02 2.81 16 6 C 0.02 1.36 5.45 84.65 0.46 1.83 16 7 N -0.94 -55.40 13.96 21.45 0.30 -55.10 16 8 Si 0.94 42.82 24.37 68.60 1.67 44.49 16 9 H -0.25 -10.57 6.87 99.48 0.68 -9.88 16 10 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 11 H -0.26 -11.59 6.53 99.48 0.65 -10.94 16 12 N -0.58 -20.73 2.75 -830.20 -2.29 -23.01 16 13 C 0.06 1.46 8.08 127.77 1.03 2.50 16 14 C 0.54 18.80 7.44 86.79 0.65 19.45 16 15 O -0.58 -25.37 16.09 -3.89 -0.06 -25.43 16 16 C -0.08 -1.85 5.47 -20.09 -0.11 -1.96 16 17 C -0.06 -1.31 9.60 22.52 0.22 -1.09 16 18 C -0.05 -0.86 9.54 22.23 0.21 -0.65 16 19 C -0.04 -0.75 6.86 36.43 0.25 -0.50 16 20 N 0.03 0.65 4.45 -46.33 -0.21 0.44 16 21 O -0.17 -4.18 18.43 18.88 0.35 -3.83 16 22 O -0.17 -3.98 18.43 18.88 0.35 -3.63 16 23 C -0.05 -0.78 9.54 22.23 0.21 -0.57 16 24 C -0.09 -1.73 7.44 22.53 0.17 -1.56 16 25 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.07 2.52 6.69 -2.39 -0.02 2.51 16 27 H 0.04 1.72 3.27 -2.39 -0.01 1.71 16 28 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 29 H 0.07 1.71 7.30 -2.39 -0.02 1.69 16 30 H 0.08 2.03 6.44 -2.39 -0.02 2.01 16 31 H 0.11 1.92 4.72 -2.39 -0.01 1.91 16 32 H 0.16 3.11 7.96 -2.91 -0.02 3.08 16 33 H 0.18 2.33 7.60 -2.91 -0.02 2.31 16 34 H 0.18 2.13 7.60 -2.91 -0.02 2.11 16 35 H 0.18 2.97 4.81 -2.91 -0.01 2.95 16 Total: -1.00 -69.33 294.80 5.21 -64.11 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 1.06 Total: 7.08 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 4.04 Total: -5.13 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -2.19 Total: -77.67 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: 0.63 Total: -32.89 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.67 Total: 44.49 kcal Total: -69.33 5.21 -64.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094196.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.393 kcal (2) G-P(sol) polarization free energy of solvation -69.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds