Wall clock time and date at job start Tue Mar 31 2020 01:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47256 * 2 1 4 4 C 1.50699 * 109.47116 * 239.99779 * 2 1 3 5 5 H 1.08003 * 120.00249 * 240.00334 * 4 2 1 6 6 C 1.37878 * 119.99864 * 60.00522 * 4 2 1 7 7 N 1.31515 * 120.00323 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99870 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47080 * 60.00029 * 8 6 4 10 10 H 1.48501 * 109.46858 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47292 * 299.99965 * 8 6 4 12 12 N 1.46501 * 109.47090 * 119.99863 * 2 1 3 13 13 C 1.46501 * 119.99827 * 60.00146 * 12 2 1 14 14 C 1.34771 * 120.00108 * 239.99872 * 12 2 1 15 15 O 1.21556 * 120.00035 * 4.86991 * 14 12 2 16 16 C 1.47846 * 120.00077 * 184.86734 * 14 12 2 17 17 C 1.39583 * 120.14161 * 320.82722 * 16 14 12 18 18 C 1.37955 * 119.84850 * 179.97438 * 17 16 14 19 19 C 1.38360 * 120.14763 * 0.02562 * 18 17 16 20 20 N 1.48018 * 119.85301 * 179.97438 * 19 18 17 21 21 O 1.21800 * 119.99803 * 0.02562 * 20 19 18 22 22 O 1.21798 * 119.99893 * 179.72923 * 20 19 18 23 23 C 1.38359 * 120.29275 * 0.25673 * 19 18 17 24 24 C 1.37953 * 120.14177 * 359.48575 * 23 19 18 25 25 H 1.08999 * 109.46669 * 59.99828 * 1 2 3 26 26 H 1.08988 * 109.47197 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46795 * 300.00762 * 1 2 3 28 28 H 0.96996 * 119.99919 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.46797 * 265.53451 * 13 12 2 30 30 H 1.09002 * 109.47394 * 25.53209 * 13 12 2 31 31 H 1.08995 * 109.47072 * 145.53729 * 13 12 2 32 32 H 1.07994 * 120.07360 * 359.95857 * 17 16 14 33 33 H 1.08005 * 119.92464 * 179.97438 * 18 17 16 34 34 H 1.07999 * 119.92414 * 179.72365 * 23 19 18 35 35 H 1.08004 * 120.06810 * 180.23406 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6035 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0082 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0141 1.1508 1.9378 16 6 3.3745 -0.7601 3.2336 17 6 2.6243 -1.7275 3.9042 18 6 3.1729 -2.4002 4.9765 19 6 4.4633 -2.1175 5.3877 20 7 5.0452 -2.8429 6.5393 21 8 4.3885 -3.6868 7.1223 22 8 6.1827 -2.5996 6.9005 23 6 5.2102 -1.1556 4.7309 24 6 4.6754 -0.4794 3.6539 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0275 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7084 1.1608 -3.4844 29 1 0.7820 -2.1445 2.0659 30 1 1.4521 -2.5767 0.4745 31 1 2.4957 -2.6017 1.9162 32 1 1.6167 -1.9486 3.5846 33 1 2.5934 -3.1487 5.4965 34 1 6.2153 -0.9365 5.0597 35 1 5.2608 0.2686 3.1398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094198.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:02 Heat of formation + Delta-G solvation = -1.585532 kcal Electronic energy + Delta-G solvation = -21140.996032 eV Core-core repulsion = 17722.049931 eV Total energy + Delta-G solvation = -3418.946101 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.32822 -40.35604 -38.39049 -36.71707 -35.69537 -33.36181 -32.11168 -31.65507 -29.49242 -27.09428 -26.43680 -25.37050 -23.42224 -23.19605 -21.34992 -19.57351 -19.16709 -18.80107 -17.68053 -17.23492 -16.46215 -16.07339 -15.47392 -15.20027 -14.79868 -14.50073 -13.97372 -13.86519 -13.31360 -12.90985 -12.69544 -12.67492 -11.92778 -11.79491 -11.71211 -11.46144 -11.30840 -11.29023 -11.18940 -10.98315 -10.88898 -10.42848 -10.31701 -9.75159 -9.62545 -9.43497 -9.32163 -8.57608 -7.90494 -6.21861 -4.31403 -0.44758 0.72649 1.06215 1.22725 2.73383 3.18664 3.23088 3.24869 3.32516 3.58358 4.14064 4.23250 4.26353 4.51041 4.66987 4.72143 4.99861 5.09822 5.38156 5.42246 5.47425 5.52953 5.70111 5.85057 5.97782 6.13824 6.26917 6.57999 6.64308 6.86298 7.13644 7.29497 7.48391 7.54157 7.81949 7.98986 8.21845 8.53072 8.74709 9.35701 10.83445 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031404 B = 0.003839 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.397821 B = 7291.270927 C = 7380.851251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.066 0.934 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.577 5.577 13 C 0.072 3.928 14 C 0.537 3.463 15 O -0.534 6.534 16 C -0.058 4.058 17 C -0.098 4.098 18 C -0.061 4.061 19 C -0.039 4.039 20 N 0.030 4.970 21 O -0.162 6.162 22 O -0.162 6.162 23 C -0.060 4.060 24 C -0.071 4.071 25 H 0.096 0.904 26 H 0.031 0.969 27 H 0.013 0.987 28 H 0.266 0.734 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.858 -6.562 11.941 13.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.084 0.916 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.307 5.307 13 C -0.072 4.072 14 C 0.323 3.677 15 O -0.413 6.413 16 C -0.062 4.062 17 C -0.117 4.117 18 C -0.080 4.080 19 C -0.122 4.122 20 N 0.549 4.451 21 O -0.378 6.378 22 O -0.378 6.378 23 C -0.079 4.079 24 C -0.090 4.090 25 H 0.114 0.886 26 H 0.050 0.950 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.178 0.822 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.567 -5.458 11.112 12.643 hybrid contribution 0.437 -0.790 -0.549 1.056 sum 3.003 -6.248 10.563 12.634 Atomic orbital electron populations 1.22096 0.97726 0.99614 1.01111 1.19079 0.91227 0.94543 0.79341 0.91629 1.21234 1.32484 1.13329 0.90145 0.92168 1.24885 0.94750 0.94907 0.99020 1.69857 1.35852 1.22399 1.24160 0.86521 0.79277 0.79585 0.81829 1.20139 1.21042 1.20174 1.48277 1.47450 1.11737 1.23198 1.22016 0.98736 0.83222 1.03215 1.18097 0.80303 0.87012 0.82311 1.90796 1.60994 1.14590 1.74907 1.20849 0.94760 0.94559 0.95991 1.21831 1.01754 0.94167 0.93931 1.20994 0.92237 0.99140 0.95665 1.21279 0.96592 1.01381 0.92927 1.43659 1.00552 0.99701 1.01234 1.94532 1.61027 1.26605 1.55617 1.94536 1.03293 1.70330 1.69650 1.21008 1.00877 0.92316 0.93682 1.21311 0.94364 0.98580 0.94743 0.88565 0.94976 0.96828 0.92407 0.93165 0.89275 0.92308 0.82166 0.82547 0.82518 0.82588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.97 37.16 0.33 -2.93 16 2 C 0.26 6.10 2.63 -69.08 -0.18 5.92 16 3 H 0.07 1.82 6.91 -51.93 -0.36 1.46 16 4 C -0.53 -13.48 7.96 -34.44 -0.27 -13.75 16 5 H 0.06 1.49 7.41 -52.48 -0.39 1.10 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -23.84 11.32 55.43 0.63 -23.21 16 8 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.58 -11.07 2.75 -176.37 -0.49 -11.55 16 13 C 0.07 1.04 7.83 59.85 0.47 1.50 16 14 C 0.54 10.06 7.35 -12.33 -0.09 9.96 16 15 O -0.53 -12.09 16.25 5.32 0.09 -12.00 16 16 C -0.06 -0.80 5.24 -104.97 -0.55 -1.35 16 17 C -0.10 -1.07 7.56 -39.18 -0.30 -1.37 16 18 C -0.06 -0.62 9.54 -39.64 -0.38 -1.00 16 19 C -0.04 -0.45 6.86 -79.86 -0.55 -1.00 16 20 N 0.03 0.39 4.45 34.01 0.15 0.54 16 21 O -0.16 -2.18 18.43 -29.46 -0.54 -2.72 16 22 O -0.16 -2.21 18.43 -29.46 -0.54 -2.76 16 23 C -0.06 -0.64 9.54 -39.64 -0.38 -1.02 16 24 C -0.07 -0.86 9.63 -39.19 -0.38 -1.24 16 25 H 0.10 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.65 7.67 -51.94 -0.40 0.25 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.05 0.59 6.89 -51.92 -0.36 0.23 16 30 H 0.09 1.41 7.09 -51.93 -0.37 1.04 16 31 H 0.06 0.71 5.81 -51.93 -0.30 0.41 16 32 H 0.16 1.50 5.30 -52.49 -0.28 1.22 16 33 H 0.16 1.27 7.60 -52.48 -0.40 0.87 16 34 H 0.16 1.40 7.60 -52.49 -0.40 1.00 16 35 H 0.16 1.82 8.05 -52.48 -0.42 1.40 16 LS Contribution 303.77 15.07 4.58 4.58 Total: -1.00 -29.60 303.77 -7.06 -36.66 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -3.54 Total: 0.09 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.37 Total: -4.62 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.29 Total: -34.23 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -1.00 Total: -17.48 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.60 -7.06 -36.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094198.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.076 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds