Wall clock time and date at job start Tue Mar 31 2020 01:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47256 * 2 1 4 4 C 1.50699 * 109.47116 * 239.99779 * 2 1 3 5 5 H 1.08003 * 120.00249 * 240.00334 * 4 2 1 6 6 C 1.37878 * 119.99864 * 60.00522 * 4 2 1 7 7 N 1.31515 * 120.00323 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99870 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47080 * 60.00029 * 8 6 4 10 10 H 1.48501 * 109.46858 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47292 * 299.99965 * 8 6 4 12 12 N 1.46501 * 109.47090 * 119.99863 * 2 1 3 13 13 C 1.46501 * 119.99827 * 60.00146 * 12 2 1 14 14 C 1.34771 * 120.00108 * 239.99872 * 12 2 1 15 15 O 1.21556 * 120.00035 * 4.86991 * 14 12 2 16 16 C 1.47846 * 120.00077 * 184.86734 * 14 12 2 17 17 C 1.39583 * 120.14161 * 320.82722 * 16 14 12 18 18 C 1.37955 * 119.84850 * 179.97438 * 17 16 14 19 19 C 1.38360 * 120.14763 * 0.02562 * 18 17 16 20 20 N 1.48018 * 119.85301 * 179.97438 * 19 18 17 21 21 O 1.21800 * 119.99803 * 0.02562 * 20 19 18 22 22 O 1.21798 * 119.99893 * 179.72923 * 20 19 18 23 23 C 1.38359 * 120.29275 * 0.25673 * 19 18 17 24 24 C 1.37953 * 120.14177 * 359.48575 * 23 19 18 25 25 H 1.08999 * 109.46669 * 59.99828 * 1 2 3 26 26 H 1.08988 * 109.47197 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46795 * 300.00762 * 1 2 3 28 28 H 0.96996 * 119.99919 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.46797 * 265.53451 * 13 12 2 30 30 H 1.09002 * 109.47394 * 25.53209 * 13 12 2 31 31 H 1.08995 * 109.47072 * 145.53729 * 13 12 2 32 32 H 1.07994 * 120.07360 * 359.95857 * 17 16 14 33 33 H 1.08005 * 119.92464 * 179.97438 * 18 17 16 34 34 H 1.07999 * 119.92414 * 179.72365 * 23 19 18 35 35 H 1.08004 * 120.06810 * 180.23406 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6035 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0082 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0141 1.1508 1.9378 16 6 3.3745 -0.7601 3.2336 17 6 2.6243 -1.7275 3.9042 18 6 3.1729 -2.4002 4.9765 19 6 4.4633 -2.1175 5.3877 20 7 5.0452 -2.8429 6.5393 21 8 4.3885 -3.6868 7.1223 22 8 6.1827 -2.5996 6.9005 23 6 5.2102 -1.1556 4.7309 24 6 4.6754 -0.4794 3.6539 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0275 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7084 1.1608 -3.4844 29 1 0.7820 -2.1445 2.0659 30 1 1.4521 -2.5767 0.4745 31 1 2.4957 -2.6017 1.9162 32 1 1.6167 -1.9486 3.5846 33 1 2.5934 -3.1487 5.4965 34 1 6.2153 -0.9365 5.0597 35 1 5.2608 0.2686 3.1398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094198.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:01 Heat of formation + Delta-G solvation = -18.226336 kcal Electronic energy + Delta-G solvation = -21141.717632 eV Core-core repulsion = 17722.049931 eV Total energy + Delta-G solvation = -3419.667700 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.30806 -41.57807 -39.61949 -37.71930 -37.32133 -35.03942 -33.35295 -32.60734 -31.13939 -28.22458 -27.67977 -27.31148 -24.60268 -24.13729 -22.78588 -20.68608 -20.46620 -19.79032 -18.70709 -18.64903 -18.16759 -17.56144 -16.72593 -16.48768 -16.10733 -15.71136 -15.28933 -14.93481 -14.51178 -14.28773 -14.17912 -13.92640 -13.55763 -13.08754 -12.95226 -12.81428 -12.74218 -12.72115 -12.43378 -12.31499 -12.31246 -12.21418 -12.14687 -11.25585 -11.02873 -10.68049 -10.53389 -10.45813 -9.47891 -8.17602 -6.34386 -1.44531 -0.13488 0.03895 0.27117 1.41900 1.43551 1.50243 1.54437 2.03084 2.33096 2.41990 3.11440 3.25011 3.32139 3.41365 3.72339 3.79548 4.16128 4.32260 4.53063 4.54166 4.58987 4.67162 4.75233 4.88111 4.93033 4.97792 5.03151 5.03874 5.32504 5.43628 5.50108 5.62415 5.97285 6.11562 6.45220 6.61725 6.72030 7.11157 7.38088 8.86671 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031404 B = 0.003839 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.397821 B = 7291.270927 C = 7380.851251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.013 0.987 4 C -0.542 4.542 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.963 3.037 9 H -0.262 1.262 10 H -0.285 1.285 11 H -0.278 1.278 12 N -0.584 5.584 13 C 0.065 3.935 14 C 0.533 3.467 15 O -0.588 6.588 16 C -0.073 4.073 17 C -0.084 4.084 18 C -0.046 4.046 19 C -0.042 4.042 20 N 0.030 4.970 21 O -0.161 6.161 22 O -0.180 6.180 23 C -0.050 4.050 24 C -0.073 4.073 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.023 0.977 28 H 0.265 0.735 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.182 0.818 33 H 0.185 0.815 34 H 0.175 0.825 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.791 -9.051 13.077 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.031 0.969 4 C -0.580 4.580 5 H 0.082 0.918 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.187 1.187 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.312 5.312 13 C -0.076 4.076 14 C 0.321 3.679 15 O -0.470 6.470 16 C -0.076 4.076 17 C -0.103 4.103 18 C -0.064 4.064 19 C -0.125 4.125 20 N 0.547 4.453 21 O -0.379 6.379 22 O -0.392 6.392 23 C -0.069 4.069 24 C -0.092 4.092 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.199 0.801 33 H 0.203 0.797 34 H 0.192 0.808 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.522 -7.986 12.276 14.861 hybrid contribution 0.464 -0.020 -0.828 0.950 sum 2.986 -8.006 11.448 14.285 Atomic orbital electron populations 1.21883 0.96648 1.00471 1.00196 1.18646 0.92002 0.92309 0.81074 0.96922 1.21523 1.32256 1.13296 0.90949 0.91836 1.25686 0.94966 0.95548 1.01925 1.70003 1.37026 1.23758 1.24610 0.85543 0.78393 0.79047 0.78246 1.18657 1.21099 1.20323 1.48209 1.47551 1.13515 1.21967 1.22328 1.01330 0.80326 1.03639 1.18754 0.79416 0.86617 0.83121 1.90760 1.62618 1.17121 1.76511 1.20467 0.95779 0.96107 0.95259 1.21935 1.02139 0.92758 0.93422 1.21247 0.91599 0.98803 0.94778 1.21468 0.97235 1.01367 0.92457 1.43827 1.00453 0.99633 1.01417 1.94523 1.60877 1.26665 1.55789 1.94545 1.03699 1.70755 1.70205 1.21086 1.01550 0.91546 0.92695 1.21287 0.93971 0.98794 0.95191 0.91363 0.93031 0.95837 0.92553 0.89692 0.90523 0.89515 0.80108 0.79743 0.80783 0.82897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.97 8.97 71.98 0.65 -5.32 16 2 C 0.26 12.67 2.63 44.25 0.12 12.79 16 3 H 0.01 0.75 6.91 -2.39 -0.02 0.73 16 4 C -0.54 -27.65 7.96 25.60 0.20 -27.44 16 5 H 0.06 3.12 7.41 -2.91 -0.02 3.10 16 6 C 0.02 0.99 5.30 84.65 0.45 1.44 16 7 N -0.92 -50.62 11.32 21.45 0.24 -50.38 16 8 Si 0.96 41.05 29.54 68.60 2.03 43.08 16 9 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 10 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 N -0.58 -22.15 2.75 -830.20 -2.29 -24.44 16 13 C 0.07 1.71 7.83 127.77 1.00 2.72 16 14 C 0.53 20.04 7.35 86.79 0.64 20.68 16 15 O -0.59 -27.84 16.25 -3.89 -0.06 -27.91 16 16 C -0.07 -1.90 5.24 -20.09 -0.11 -2.00 16 17 C -0.08 -1.53 7.56 22.53 0.17 -1.36 16 18 C -0.05 -0.73 9.54 22.23 0.21 -0.52 16 19 C -0.04 -0.84 6.86 36.43 0.25 -0.59 16 20 N 0.03 0.69 4.45 -46.32 -0.21 0.48 16 21 O -0.16 -3.84 18.43 18.89 0.35 -3.50 16 22 O -0.18 -4.53 18.43 18.89 0.35 -4.19 16 23 C -0.05 -0.96 9.54 22.23 0.21 -0.75 16 24 C -0.07 -1.69 9.63 22.52 0.22 -1.47 16 25 H 0.07 3.46 6.07 -2.39 -0.01 3.44 16 26 H 0.05 2.05 7.67 -2.39 -0.02 2.03 16 27 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 29 H 0.08 1.65 6.89 -2.38 -0.02 1.64 16 30 H 0.08 2.24 7.09 -2.39 -0.02 2.22 16 31 H 0.09 1.79 5.81 -2.39 -0.01 1.78 16 32 H 0.18 2.55 5.30 -2.91 -0.02 2.53 16 33 H 0.19 2.01 7.60 -2.91 -0.02 1.99 16 34 H 0.17 2.71 7.60 -2.91 -0.02 2.69 16 35 H 0.15 3.58 8.05 -2.91 -0.02 3.56 16 Total: -1.00 -66.71 303.77 5.55 -61.16 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.13 Total: 7.53 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 4.01 Total: -1.84 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -2.25 Total: -74.34 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: 0.63 Total: -35.59 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -66.71 5.55 -61.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094198.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.931 kcal (2) G-P(sol) polarization free energy of solvation -66.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds