Wall clock time and date at job start Tue Mar 31 2020 01:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47550 * 2 1 4 4 C 1.50707 * 109.47105 * 120.00021 * 2 1 3 5 5 H 1.07999 * 119.99562 * 95.23158 * 4 2 1 6 6 C 1.37872 * 119.99808 * 275.22888 * 4 2 1 7 7 N 1.31517 * 120.00199 * 355.14023 * 6 4 2 8 8 Si 1.86806 * 120.00053 * 175.13410 * 6 4 2 9 9 H 1.48497 * 109.47100 * 89.99946 * 8 6 4 10 10 H 1.48494 * 109.46994 * 210.00664 * 8 6 4 11 11 H 1.48502 * 109.46737 * 330.00237 * 8 6 4 12 12 N 1.46498 * 109.47338 * 239.99809 * 2 1 3 13 13 C 1.46503 * 120.00233 * 300.00420 * 12 2 1 14 14 S 1.65600 * 119.99909 * 119.99743 * 12 2 1 15 15 O 1.42102 * 106.40436 * 203.53769 * 14 12 2 16 16 O 1.42100 * 106.40451 * 336.46677 * 14 12 2 17 17 N 1.65600 * 107.21611 * 90.00389 * 14 12 2 18 18 C 1.47153 * 120.98260 * 269.71806 * 17 14 12 19 19 C 1.53720 * 108.16447 * 129.43212 * 18 17 14 20 20 O 1.42962 * 109.14325 * 52.53803 * 19 18 17 21 21 C 1.42962 * 114.16909 * 297.28725 * 20 19 18 22 22 C 1.47157 * 120.98472 * 89.99874 * 17 14 12 23 23 H 1.08995 * 109.47046 * 175.09523 * 1 2 3 24 24 H 1.09000 * 109.46906 * 295.09583 * 1 2 3 25 25 H 1.09005 * 109.46690 * 55.09781 * 1 2 3 26 26 H 0.97002 * 120.00101 * 5.14404 * 7 6 4 27 27 H 1.08996 * 109.47200 * 89.99752 * 13 12 2 28 28 H 1.09004 * 109.47159 * 209.99950 * 13 12 2 29 29 H 1.09004 * 109.46503 * 329.99614 * 13 12 2 30 30 H 1.09002 * 109.68244 * 249.20793 * 18 17 14 31 31 H 1.08996 * 109.67904 * 9.76255 * 18 17 14 32 32 H 1.08997 * 109.65201 * 292.57743 * 19 18 17 33 33 H 1.09000 * 109.48686 * 172.40097 * 19 18 17 34 34 H 1.09005 * 109.51277 * 302.66241 * 21 20 19 35 35 H 1.08999 * 109.55622 * 182.53273 * 21 20 19 36 36 H 1.08999 * 109.68228 * 350.23605 * 22 17 14 37 37 H 1.09001 * 109.67945 * 110.75423 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.2927 -1.7574 1.1810 6 6 2.1595 -0.0238 2.4193 7 7 1.9344 1.2714 2.4579 8 14 2.6514 -0.9331 3.9752 9 1 4.1309 -0.9312 4.1028 10 1 2.0519 -0.2575 5.1538 11 1 2.1624 -2.3335 3.9055 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 16 2.9704 0.1142 -2.2862 15 8 2.8229 -0.5646 -3.5259 16 8 2.6904 1.4973 -2.1192 17 7 4.5437 -0.1042 -1.8179 18 6 5.1985 0.8400 -0.8986 19 6 5.8448 0.0318 0.2381 20 8 6.6764 -0.9859 -0.3243 21 6 5.9718 -1.9484 -1.1123 22 6 5.3303 -1.2448 -2.3137 23 1 -0.3633 -1.0239 -0.0879 24 1 -0.3633 0.4359 0.9307 25 1 -0.3633 0.5880 -0.8429 26 1 1.6070 1.7306 1.6687 27 1 0.7376 -2.1444 -1.9994 28 1 2.4629 -2.5819 -1.9863 29 1 1.5295 -2.5968 -0.4708 30 1 5.9635 1.4026 -1.4337 31 1 4.4576 1.5258 -0.4878 32 1 5.0678 -0.4288 0.8481 33 1 6.4490 0.6947 0.8576 34 1 5.1953 -2.4162 -0.5071 35 1 6.6669 -2.7103 -1.4651 36 1 4.6768 -1.9402 -2.8404 37 1 6.1079 -0.8885 -2.9893 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095084.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:57 Heat of formation + Delta-G solvation = -117.509846 kcal Electronic energy + Delta-G solvation = -22171.827005 eV Core-core repulsion = 18883.298000 eV Total energy + Delta-G solvation = -3288.529005 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.88675 -36.87873 -36.39291 -35.36664 -34.48678 -32.78958 -31.12989 -29.22996 -26.75720 -25.70653 -24.83894 -23.96429 -21.36736 -20.81957 -18.63491 -17.58644 -17.09646 -16.85582 -16.09607 -15.52330 -15.12880 -14.79813 -14.56871 -14.00585 -13.88682 -13.73285 -13.53543 -13.02822 -12.40306 -12.07491 -11.96257 -11.81596 -11.72905 -11.50969 -11.45635 -11.37062 -11.30047 -11.15334 -10.83296 -10.70292 -10.27504 -10.25226 -10.16977 -10.05234 -9.14426 -8.61016 -8.48124 -7.95110 -6.51955 -4.27431 1.08525 3.27794 3.31810 3.36724 3.50563 3.98834 4.05758 4.36830 4.71997 4.95165 5.03618 5.18871 5.31478 5.38037 5.46160 5.55862 5.61444 5.76742 5.84700 5.95480 6.02040 6.14273 6.26792 6.33204 6.38270 6.48172 6.53309 6.72780 6.73288 7.05758 7.26391 7.34633 7.53584 7.96556 8.28874 8.65976 9.43228 10.83968 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.010155 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.596964 B = 2756.539191 C = 3646.258927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.249 3.751 3 H 0.059 0.941 4 C -0.601 4.601 5 H 0.057 0.943 6 C 0.026 3.974 7 N -0.903 5.903 8 Si 1.065 2.935 9 H -0.286 1.286 10 H -0.283 1.283 11 H -0.288 1.288 12 N -0.987 5.987 13 C 0.107 3.893 14 S 2.779 3.221 15 O -0.996 6.996 16 O -0.980 6.980 17 N -1.008 6.008 18 C 0.097 3.903 19 C 0.046 3.954 20 O -0.383 6.383 21 C 0.049 3.951 22 C 0.092 3.908 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.022 0.978 26 H 0.273 0.727 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 -5.624 -5.536 9.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.145 3.855 3 H 0.077 0.923 4 C -0.641 4.641 5 H 0.075 0.925 6 C -0.180 4.180 7 N -0.538 5.538 8 Si 0.894 3.106 9 H -0.213 1.213 10 H -0.209 1.209 11 H -0.214 1.214 12 N -0.829 5.829 13 C -0.040 4.040 14 S 2.790 3.210 15 O -0.980 6.980 16 O -0.964 6.964 17 N -0.847 5.847 18 C -0.028 4.028 19 C -0.032 4.032 20 O -0.302 6.302 21 C -0.029 4.029 22 C -0.034 4.034 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.955 -4.895 -4.691 9.024 hybrid contribution -0.606 -0.482 -1.311 1.523 sum 5.349 -5.377 -6.002 9.672 Atomic orbital electron populations 1.22127 0.98650 0.99861 0.99579 1.18881 0.91106 0.93389 0.82090 0.92334 1.22127 1.48719 0.98553 0.94657 0.92474 1.25768 0.94794 0.95943 1.01497 1.70773 1.41235 1.08152 1.33671 0.83588 0.76683 0.74794 0.75569 1.21275 1.20907 1.21425 1.57864 1.64403 1.21218 1.39370 1.21186 0.98944 0.82128 1.01699 1.02024 0.72335 0.73480 0.73207 1.93528 1.85922 1.76330 1.42214 1.93567 1.83705 1.32291 1.86799 1.58328 1.30165 1.35381 1.60846 1.22043 0.98385 0.91433 0.90987 1.23096 0.95393 0.90220 0.94475 1.87871 1.34836 1.39711 1.67751 1.22894 0.96987 0.91015 0.92035 1.21974 0.96399 0.88379 0.96668 0.93740 0.92344 0.95889 0.91528 0.93919 0.93235 0.90308 0.91307 0.88244 0.90426 0.88243 0.92171 0.88454 0.89117 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.25 37.16 0.34 -2.76 16 2 C 0.25 5.76 2.35 -69.08 -0.16 5.59 16 3 H 0.06 1.50 5.44 -51.93 -0.28 1.22 16 4 C -0.60 -14.65 8.13 -34.44 -0.28 -14.93 16 5 H 0.06 1.38 6.66 -52.49 -0.35 1.03 16 6 C 0.03 0.67 5.45 -17.82 -0.10 0.57 16 7 N -0.90 -24.75 13.63 55.43 0.76 -23.99 16 8 Si 1.07 23.01 29.91 -169.99 -5.08 17.92 16 9 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 12 N -0.99 -20.01 3.12 -115.85 -0.36 -20.37 16 13 C 0.11 1.84 9.22 59.85 0.55 2.39 16 14 S 2.78 55.58 6.07 -107.50 -0.65 54.93 16 15 O -1.00 -20.49 16.01 -57.17 -0.92 -21.41 16 16 O -0.98 -22.46 15.49 -57.17 -0.89 -23.34 16 17 N -1.01 -17.40 3.39 -112.81 -0.38 -17.78 16 18 C 0.10 1.64 6.60 -3.31 -0.02 1.62 16 19 C 0.05 0.75 7.00 37.53 0.26 1.02 16 20 O -0.38 -6.04 10.74 -35.23 -0.38 -6.42 16 21 C 0.05 0.66 6.98 37.31 0.26 0.93 16 22 C 0.09 1.30 6.57 -3.53 -0.02 1.28 16 23 H 0.04 0.90 7.51 -51.93 -0.39 0.51 16 24 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.27 7.58 6.66 -40.82 -0.27 7.31 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.74 7.79 -51.93 -0.40 0.34 16 29 H 0.08 1.37 6.63 -51.93 -0.34 1.02 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.86 7.24 -51.93 -0.38 1.48 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.20 7.25 -51.93 -0.38 0.83 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 309.69 15.07 4.67 4.67 Total: -1.00 -30.13 309.69 -7.80 -37.93 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.40 Total: 2.16 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 0.83 Total: -4.30 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 0.01 Total: -62.14 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -2.18 Total: -51.17 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.08 Total: 17.92 kcal Atomic # 16 Polarization: 55.58 SS G_CDS: -0.65 Total: 54.93 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.13 -7.80 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095084.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.581 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds