Wall clock time and date at job start Tue Mar 31 2020 01:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47550 * 2 1 4 4 C 1.50707 * 109.47105 * 120.00021 * 2 1 3 5 5 H 1.07999 * 119.99562 * 95.23158 * 4 2 1 6 6 C 1.37872 * 119.99808 * 275.22888 * 4 2 1 7 7 N 1.31517 * 120.00199 * 355.14023 * 6 4 2 8 8 Si 1.86806 * 120.00053 * 175.13410 * 6 4 2 9 9 H 1.48497 * 109.47100 * 89.99946 * 8 6 4 10 10 H 1.48494 * 109.46994 * 210.00664 * 8 6 4 11 11 H 1.48502 * 109.46737 * 330.00237 * 8 6 4 12 12 N 1.46498 * 109.47338 * 239.99809 * 2 1 3 13 13 C 1.46503 * 120.00233 * 300.00420 * 12 2 1 14 14 S 1.65600 * 119.99909 * 119.99743 * 12 2 1 15 15 O 1.42102 * 106.40436 * 203.53769 * 14 12 2 16 16 O 1.42100 * 106.40451 * 336.46677 * 14 12 2 17 17 N 1.65600 * 107.21611 * 90.00389 * 14 12 2 18 18 C 1.47153 * 120.98260 * 269.71806 * 17 14 12 19 19 C 1.53720 * 108.16447 * 129.43212 * 18 17 14 20 20 O 1.42962 * 109.14325 * 52.53803 * 19 18 17 21 21 C 1.42962 * 114.16909 * 297.28725 * 20 19 18 22 22 C 1.47157 * 120.98472 * 89.99874 * 17 14 12 23 23 H 1.08995 * 109.47046 * 175.09523 * 1 2 3 24 24 H 1.09000 * 109.46906 * 295.09583 * 1 2 3 25 25 H 1.09005 * 109.46690 * 55.09781 * 1 2 3 26 26 H 0.97002 * 120.00101 * 5.14404 * 7 6 4 27 27 H 1.08996 * 109.47200 * 89.99752 * 13 12 2 28 28 H 1.09004 * 109.47159 * 209.99950 * 13 12 2 29 29 H 1.09004 * 109.46503 * 329.99614 * 13 12 2 30 30 H 1.09002 * 109.68244 * 249.20793 * 18 17 14 31 31 H 1.08996 * 109.67904 * 9.76255 * 18 17 14 32 32 H 1.08997 * 109.65201 * 292.57743 * 19 18 17 33 33 H 1.09000 * 109.48686 * 172.40097 * 19 18 17 34 34 H 1.09005 * 109.51277 * 302.66241 * 21 20 19 35 35 H 1.08999 * 109.55622 * 182.53273 * 21 20 19 36 36 H 1.08999 * 109.68228 * 350.23605 * 22 17 14 37 37 H 1.09001 * 109.67945 * 110.75423 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.2927 -1.7574 1.1810 6 6 2.1595 -0.0238 2.4193 7 7 1.9344 1.2714 2.4579 8 14 2.6514 -0.9331 3.9752 9 1 4.1309 -0.9312 4.1028 10 1 2.0519 -0.2575 5.1538 11 1 2.1624 -2.3335 3.9055 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 16 2.9704 0.1142 -2.2862 15 8 2.8229 -0.5646 -3.5259 16 8 2.6904 1.4973 -2.1192 17 7 4.5437 -0.1042 -1.8179 18 6 5.1985 0.8400 -0.8986 19 6 5.8448 0.0318 0.2381 20 8 6.6764 -0.9859 -0.3243 21 6 5.9718 -1.9484 -1.1123 22 6 5.3303 -1.2448 -2.3137 23 1 -0.3633 -1.0239 -0.0879 24 1 -0.3633 0.4359 0.9307 25 1 -0.3633 0.5880 -0.8429 26 1 1.6070 1.7306 1.6687 27 1 0.7376 -2.1444 -1.9994 28 1 2.4629 -2.5819 -1.9863 29 1 1.5295 -2.5968 -0.4708 30 1 5.9635 1.4026 -1.4337 31 1 4.4576 1.5258 -0.4878 32 1 5.0678 -0.4288 0.8481 33 1 6.4490 0.6947 0.8576 34 1 5.1953 -2.4162 -0.5071 35 1 6.6669 -2.7103 -1.4651 36 1 4.6768 -1.9402 -2.8404 37 1 6.1079 -0.8885 -2.9893 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095084.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:56 Heat of formation + Delta-G solvation = -139.792365 kcal Electronic energy + Delta-G solvation = -22172.793248 eV Core-core repulsion = 18883.298000 eV Total energy + Delta-G solvation = -3289.495248 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.12234 -38.54974 -38.10122 -37.03924 -35.79030 -34.63212 -32.34605 -30.99308 -28.04310 -27.23149 -26.76748 -25.18901 -22.96615 -22.31119 -20.12647 -19.15199 -18.78061 -18.56404 -17.46604 -16.93031 -16.38621 -16.06784 -16.02399 -15.60977 -15.52831 -15.22498 -15.14962 -14.63752 -13.76663 -13.70426 -13.53860 -13.34933 -13.26356 -13.16684 -13.13750 -13.03409 -12.78294 -12.57797 -12.34349 -12.31939 -12.01933 -11.91188 -11.52810 -11.37719 -10.89540 -10.46354 -9.86640 -9.64157 -8.53612 -6.28960 -0.47791 1.58311 1.63801 1.79660 1.81826 2.42503 2.58775 2.89481 3.19187 3.25858 3.64865 3.84184 4.00754 4.16378 4.18873 4.27382 4.40642 4.45110 4.59667 4.64415 4.65146 4.71569 4.80875 4.83150 4.90382 4.99602 5.07140 5.07836 5.26706 5.41605 5.47118 5.82723 6.07280 6.14397 6.32462 6.62314 7.49166 8.81796 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.010155 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.596964 B = 2756.539191 C = 3646.258927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.251 3.749 3 H 0.028 0.972 4 C -0.592 4.592 5 H 0.061 0.939 6 C -0.017 4.017 7 N -0.933 5.933 8 Si 1.105 2.895 9 H -0.274 1.274 10 H -0.292 1.292 11 H -0.270 1.270 12 N -0.993 5.993 13 C 0.099 3.901 14 S 2.790 3.210 15 O -1.000 7.000 16 O -1.015 7.015 17 N -1.008 6.008 18 C 0.096 3.904 19 C 0.054 3.946 20 O -0.387 6.387 21 C 0.046 3.954 22 C 0.084 3.916 23 H 0.060 0.940 24 H 0.040 0.960 25 H 0.029 0.971 26 H 0.258 0.742 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.116 0.884 34 H 0.051 0.949 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.953 -7.637 -6.090 11.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.147 3.853 3 H 0.046 0.954 4 C -0.632 4.632 5 H 0.080 0.920 6 C -0.217 4.217 7 N -0.570 5.570 8 Si 0.929 3.071 9 H -0.200 1.200 10 H -0.218 1.218 11 H -0.195 1.195 12 N -0.834 5.834 13 C -0.046 4.046 14 S 2.801 3.199 15 O -0.984 6.984 16 O -0.999 6.999 17 N -0.849 5.849 18 C -0.030 4.030 19 C -0.024 4.024 20 O -0.305 6.305 21 C -0.031 4.031 22 C -0.040 4.040 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.134 0.866 34 H 0.069 0.931 35 H 0.153 0.847 36 H 0.120 0.880 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.207 -6.944 -5.274 11.312 hybrid contribution -0.965 0.091 -1.248 1.580 sum 6.241 -6.853 -6.522 11.334 Atomic orbital electron populations 1.22034 0.97842 1.00838 0.98973 1.18644 0.91717 0.92063 0.82898 0.95399 1.22300 1.47410 0.98577 0.94912 0.92039 1.26913 0.94588 0.95812 1.04406 1.70885 1.43686 1.09347 1.33091 0.83067 0.77093 0.74583 0.72378 1.20008 1.21766 1.19519 1.57732 1.64983 1.22440 1.38258 1.21410 1.00540 0.80431 1.02215 1.01484 0.72834 0.72561 0.73000 1.93514 1.86363 1.76199 1.42344 1.93520 1.84588 1.34604 1.87218 1.58143 1.29369 1.36534 1.60881 1.22086 0.98071 0.91362 0.91444 1.22962 0.94948 0.90490 0.94037 1.87873 1.34883 1.39791 1.67972 1.23118 0.97684 0.91059 0.91283 1.22308 0.96762 0.87558 0.97408 0.92054 0.94058 0.95208 0.93096 0.92750 0.90764 0.90458 0.88965 0.90957 0.93349 0.86578 0.93105 0.84659 0.87990 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.00 9.25 71.98 0.67 -5.34 16 2 C 0.25 11.75 2.35 44.25 0.10 11.86 16 3 H 0.03 1.50 5.44 -2.39 -0.01 1.49 16 4 C -0.59 -28.83 8.13 25.60 0.21 -28.63 16 5 H 0.06 2.90 6.66 -2.91 -0.02 2.88 16 6 C -0.02 -0.87 5.45 84.65 0.46 -0.41 16 7 N -0.93 -52.50 13.63 21.45 0.29 -52.21 16 8 Si 1.11 45.89 29.91 68.60 2.05 47.94 16 9 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 12 N -0.99 -39.56 3.12 -520.43 -1.62 -41.18 16 13 C 0.10 3.22 9.22 127.77 1.18 4.40 16 14 S 2.79 109.97 6.07 -56.49 -0.34 109.63 16 15 O -1.00 -39.47 16.01 -128.00 -2.05 -41.52 16 16 O -1.02 -47.46 15.49 -128.00 -1.98 -49.44 16 17 N -1.01 -33.48 3.39 -510.83 -1.73 -35.22 16 18 C 0.10 3.18 6.60 86.50 0.57 3.75 16 19 C 0.05 1.71 7.00 72.22 0.51 2.21 16 20 O -0.39 -11.22 10.74 -148.98 -1.60 -12.82 16 21 C 0.05 1.11 6.98 72.08 0.50 1.61 16 22 C 0.08 2.14 6.57 86.35 0.57 2.71 16 23 H 0.06 2.42 7.51 -2.39 -0.02 2.40 16 24 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.26 15.00 6.66 -92.71 -0.62 14.38 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 2.01 7.79 -2.39 -0.02 2.00 16 29 H 0.08 2.52 6.63 -2.39 -0.02 2.51 16 30 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.80 7.24 -2.39 -0.02 2.78 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 34 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.10 2.37 7.25 -2.39 -0.02 2.35 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -64.49 309.69 -1.02 -65.51 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 1.21 Total: 17.14 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 4.76 Total: -7.83 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -3.07 Total: -128.61 kcal Atomic # 8 Polarization: -98.15 SS G_CDS: -5.63 Total: -103.78 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.05 Total: 47.94 kcal Atomic # 16 Polarization: 109.97 SS G_CDS: -0.34 Total: 109.63 kcal Total: -64.49 -1.02 -65.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095084.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.286 kcal (2) G-P(sol) polarization free energy of solvation -64.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds