Wall clock time and date at job start Tue Mar 31 2020 01:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46926 * 60.00146 * 8 6 4 10 10 H 1.48500 * 109.47454 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47297 * 300.00528 * 8 6 4 12 12 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 13 13 C 1.46502 * 119.99826 * 59.99817 * 12 2 1 14 14 S 1.65594 * 120.00299 * 240.00373 * 12 2 1 15 15 O 1.42100 * 106.40539 * 203.54027 * 14 12 2 16 16 O 1.42106 * 106.39996 * 336.45878 * 14 12 2 17 17 N 1.65594 * 107.22053 * 89.99772 * 14 12 2 18 18 C 1.47155 * 120.98379 * 269.72112 * 17 14 12 19 19 C 1.53712 * 108.16450 * 129.43367 * 18 17 14 20 20 O 1.42958 * 109.14989 * 52.53672 * 19 18 17 21 21 C 1.42962 * 114.16467 * 297.29050 * 20 19 18 22 22 C 1.47151 * 120.98353 * 90.00171 * 17 14 12 23 23 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 26 26 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.47121 * 90.00454 * 13 12 2 28 28 H 1.08998 * 109.47156 * 209.99669 * 13 12 2 29 29 H 1.09000 * 109.47663 * 330.00193 * 13 12 2 30 30 H 1.09003 * 109.68007 * 249.21332 * 18 17 14 31 31 H 1.08996 * 109.68062 * 9.76206 * 18 17 14 32 32 H 1.09001 * 109.65333 * 292.57128 * 19 18 17 33 33 H 1.09003 * 109.48776 * 172.40493 * 19 18 17 34 34 H 1.08999 * 109.51765 * 302.65496 * 21 20 19 35 35 H 1.09009 * 109.55380 * 182.52559 * 21 20 19 36 36 H 1.08994 * 109.68421 * 350.23734 * 22 17 14 37 37 H 1.09004 * 109.68511 * 110.75474 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8259 -2.5200 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8789 2.9813 16 8 3.5794 1.1830 1.5748 17 7 1.9607 0.8089 3.3997 18 6 1.4369 2.1698 3.2022 19 6 -0.0876 2.1291 3.3949 20 8 -0.3854 1.5106 4.6489 21 6 0.0392 0.1489 4.7453 22 6 1.5657 0.0860 4.6191 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7094 1.1619 -3.4844 27 1 2.4158 -2.7377 0.9715 28 1 1.6240 -2.2853 2.5000 29 1 0.6905 -2.3003 0.9845 30 1 1.8841 2.8448 3.9319 31 1 1.6717 2.5107 2.1939 32 1 -0.5439 1.5551 2.5884 33 1 -0.4823 3.1451 3.3872 34 1 -0.4166 -0.4323 3.9437 35 1 -0.2635 -0.2603 5.7092 36 1 1.8858 -0.9535 4.5495 37 1 2.0261 0.5544 5.4890 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095086.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:00 Heat of formation + Delta-G solvation = -110.744698 kcal Electronic energy + Delta-G solvation = -21837.277635 eV Core-core repulsion = 18549.041988 eV Total energy + Delta-G solvation = -3288.235646 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.09758 -36.80452 -36.20686 -35.29081 -34.64051 -32.61954 -31.33734 -29.14095 -26.93199 -25.64646 -25.18446 -24.14298 -21.52752 -20.51884 -18.61339 -17.55004 -16.97835 -16.41317 -16.23115 -15.64813 -15.29325 -15.01761 -14.90019 -14.29863 -14.02390 -13.54655 -13.24408 -12.87577 -12.54873 -12.08537 -11.98481 -11.81961 -11.72935 -11.52514 -11.39075 -11.28959 -11.27747 -11.00524 -10.84793 -10.65174 -10.38885 -10.33310 -10.22359 -9.96673 -9.32330 -8.72368 -8.48755 -8.01484 -6.11041 -4.17589 1.07499 3.28133 3.32070 3.32623 3.36847 3.83981 4.01004 4.37295 4.67207 4.85692 4.89848 5.12348 5.19732 5.23877 5.28448 5.40584 5.55454 5.57536 5.63064 5.77714 5.95985 6.08667 6.14395 6.31853 6.52612 6.60573 6.72518 6.77705 6.95359 7.11115 7.40696 7.58239 7.74018 7.99196 8.23128 8.84286 9.48405 10.94630 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025197 B = 0.006727 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.962651 B = 4161.216729 C = 4536.598520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.990 5.990 13 C 0.111 3.889 14 S 2.777 3.223 15 O -0.993 6.993 16 O -0.970 6.970 17 N -1.015 6.015 18 C 0.090 3.910 19 C 0.046 3.954 20 O -0.382 6.382 21 C 0.048 3.952 22 C 0.090 3.910 23 H 0.093 0.907 24 H 0.033 0.967 25 H 0.010 0.990 26 H 0.264 0.736 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 -0.385 12.409 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.075 0.925 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.833 5.833 13 C -0.036 4.036 14 S 2.787 3.213 15 O -0.977 6.977 16 O -0.954 6.954 17 N -0.854 5.854 18 C -0.035 4.035 19 C -0.032 4.032 20 O -0.300 6.300 21 C -0.030 4.030 22 C -0.036 4.036 23 H 0.112 0.888 24 H 0.052 0.948 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.988 -0.108 12.410 12.765 hybrid contribution 0.027 -0.652 -1.127 1.302 sum -2.961 -0.760 11.283 11.690 Atomic orbital electron populations 1.22157 0.98299 0.99757 1.00517 1.18726 0.91230 0.92928 0.80563 0.92475 1.21288 1.31686 1.13054 0.90028 0.92018 1.24901 0.94923 0.95003 0.98996 1.69837 1.36491 1.22652 1.23945 0.86549 0.79374 0.79575 0.81860 1.20242 1.21175 1.20151 1.57785 1.70016 1.19797 1.35673 1.21137 1.01760 0.82120 0.98569 1.02113 0.73793 0.73097 0.72252 1.93528 1.69048 1.60399 1.74682 1.93595 1.73788 1.55895 1.72074 1.58590 1.67707 1.24487 1.34580 1.22101 0.94792 0.83007 1.03647 1.23113 0.94533 0.99061 0.86512 1.87900 1.80674 1.25638 1.35765 1.22935 0.93542 0.83952 1.02565 1.21987 0.96116 0.97659 0.87828 0.88804 0.94754 0.97148 0.92608 0.93205 0.93550 0.90964 0.90819 0.88091 0.91714 0.87955 0.92391 0.88167 0.88819 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.95 37.16 0.33 -2.88 16 2 C 0.27 6.38 2.62 -69.08 -0.18 6.20 16 3 H 0.06 1.50 6.91 -51.93 -0.36 1.14 16 4 C -0.52 -13.84 8.37 -34.44 -0.29 -14.13 16 5 H 0.06 1.64 7.65 -52.48 -0.40 1.24 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.30 11.32 55.43 0.63 -23.67 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.99 -20.17 3.12 -115.85 -0.36 -20.53 16 13 C 0.11 1.92 9.53 59.85 0.57 2.49 16 14 S 2.78 54.64 6.07 -107.50 -0.65 53.99 16 15 O -0.99 -20.49 16.01 -57.17 -0.92 -21.40 16 16 O -0.97 -22.45 15.50 -57.17 -0.89 -23.34 16 17 N -1.01 -15.74 3.39 -112.82 -0.38 -16.12 16 18 C 0.09 1.28 6.60 -3.31 -0.02 1.26 16 19 C 0.05 0.58 7.00 37.53 0.26 0.84 16 20 O -0.38 -4.98 10.74 -35.23 -0.38 -5.36 16 21 C 0.05 0.55 6.98 37.31 0.26 0.81 16 22 C 0.09 1.13 6.57 -3.53 -0.02 1.11 16 23 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 24 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 25 H 0.01 0.18 6.64 -51.93 -0.34 -0.16 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.66 7.79 -51.93 -0.40 0.26 16 29 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.56 7.24 -51.93 -0.38 1.18 16 32 H 0.06 0.88 6.64 -51.93 -0.34 0.54 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.09 1.12 7.25 -51.93 -0.38 0.75 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 305.36 15.07 4.60 4.60 Total: -1.00 -31.55 305.36 -7.82 -39.38 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.27 Total: -0.79 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 0.82 Total: -2.68 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -0.12 Total: -60.31 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -2.18 Total: -50.10 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 54.64 SS G_CDS: -0.65 Total: 53.99 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.55 -7.82 -39.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095086.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.370 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds