Wall clock time and date at job start Tue Mar 31 2020 01:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46926 * 60.00146 * 8 6 4 10 10 H 1.48500 * 109.47454 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47297 * 300.00528 * 8 6 4 12 12 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 13 13 C 1.46502 * 119.99826 * 59.99817 * 12 2 1 14 14 S 1.65594 * 120.00299 * 240.00373 * 12 2 1 15 15 O 1.42100 * 106.40539 * 203.54027 * 14 12 2 16 16 O 1.42106 * 106.39996 * 336.45878 * 14 12 2 17 17 N 1.65594 * 107.22053 * 89.99772 * 14 12 2 18 18 C 1.47155 * 120.98379 * 269.72112 * 17 14 12 19 19 C 1.53712 * 108.16450 * 129.43367 * 18 17 14 20 20 O 1.42958 * 109.14989 * 52.53672 * 19 18 17 21 21 C 1.42962 * 114.16467 * 297.29050 * 20 19 18 22 22 C 1.47151 * 120.98353 * 90.00171 * 17 14 12 23 23 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 26 26 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.47121 * 90.00454 * 13 12 2 28 28 H 1.08998 * 109.47156 * 209.99669 * 13 12 2 29 29 H 1.09000 * 109.47663 * 330.00193 * 13 12 2 30 30 H 1.09003 * 109.68007 * 249.21332 * 18 17 14 31 31 H 1.08996 * 109.68062 * 9.76206 * 18 17 14 32 32 H 1.09001 * 109.65333 * 292.57128 * 19 18 17 33 33 H 1.09003 * 109.48776 * 172.40493 * 19 18 17 34 34 H 1.08999 * 109.51765 * 302.65496 * 21 20 19 35 35 H 1.09009 * 109.55380 * 182.52559 * 21 20 19 36 36 H 1.08994 * 109.68421 * 350.23734 * 22 17 14 37 37 H 1.09004 * 109.68511 * 110.75474 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8259 -2.5200 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8789 2.9813 16 8 3.5794 1.1830 1.5748 17 7 1.9607 0.8089 3.3997 18 6 1.4369 2.1698 3.2022 19 6 -0.0876 2.1291 3.3949 20 8 -0.3854 1.5106 4.6489 21 6 0.0392 0.1489 4.7453 22 6 1.5657 0.0860 4.6191 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7094 1.1619 -3.4844 27 1 2.4158 -2.7377 0.9715 28 1 1.6240 -2.2853 2.5000 29 1 0.6905 -2.3003 0.9845 30 1 1.8841 2.8448 3.9319 31 1 1.6717 2.5107 2.1939 32 1 -0.5439 1.5551 2.5884 33 1 -0.4823 3.1451 3.3872 34 1 -0.4166 -0.4323 3.9437 35 1 -0.2635 -0.2603 5.7092 36 1 1.8858 -0.9535 4.5495 37 1 2.0261 0.5544 5.4890 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095086.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:59 Heat of formation + Delta-G solvation = -134.662085 kcal Electronic energy + Delta-G solvation = -21838.314770 eV Core-core repulsion = 18549.041988 eV Total energy + Delta-G solvation = -3289.272782 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.11648 -38.45566 -37.91208 -36.94962 -35.76955 -34.54288 -32.34223 -30.91819 -28.02604 -27.30773 -27.01417 -25.15578 -22.89940 -22.03058 -19.99014 -19.04897 -18.65018 -18.17743 -17.45646 -17.04723 -16.57341 -16.32432 -16.00155 -15.79340 -15.24724 -15.16362 -14.81265 -14.58060 -13.80585 -13.66150 -13.44296 -13.28066 -13.20779 -13.08599 -13.01918 -12.82066 -12.74218 -12.62212 -12.34530 -12.26760 -12.17111 -11.95343 -11.45457 -11.26504 -11.15305 -10.50775 -9.85653 -9.67747 -8.12966 -6.26330 -0.44865 1.41898 1.43929 1.50725 1.92276 2.40668 2.51733 2.92558 3.15239 3.26705 3.69263 3.85525 4.06032 4.17818 4.21049 4.28050 4.41349 4.62215 4.65315 4.68236 4.76503 4.82225 4.92304 4.98270 5.07558 5.12223 5.13856 5.16875 5.43801 5.60390 5.76728 5.86401 6.12673 6.16600 6.29272 6.80435 7.42538 8.90760 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025197 B = 0.006727 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.962651 B = 4161.216729 C = 4536.598520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.274 3.726 3 H 0.025 0.975 4 C -0.541 4.541 5 H 0.054 0.946 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.997 5.997 13 C 0.104 3.896 14 S 2.790 3.210 15 O -1.004 7.004 16 O -1.012 7.012 17 N -1.009 6.009 18 C 0.085 3.915 19 C 0.051 3.949 20 O -0.388 6.388 21 C 0.048 3.952 22 C 0.082 3.918 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.265 0.735 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.126 0.874 34 H 0.056 0.944 35 H 0.133 0.867 36 H 0.100 0.900 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.728 -1.069 13.807 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.170 3.830 3 H 0.043 0.957 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.839 5.839 13 C -0.041 4.041 14 S 2.801 3.199 15 O -0.988 6.988 16 O -0.996 6.996 17 N -0.851 5.851 18 C -0.041 4.041 19 C -0.027 4.027 20 O -0.306 6.306 21 C -0.030 4.030 22 C -0.043 4.043 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.118 0.882 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.931 -0.817 13.818 14.390 hybrid contribution 0.337 -0.429 -1.453 1.552 sum -3.594 -1.246 12.365 12.937 Atomic orbital electron populations 1.21929 0.96660 1.00176 1.00512 1.18396 0.92308 0.91247 0.81029 0.95731 1.21620 1.31798 1.13093 0.91592 0.92784 1.25597 0.95192 0.95711 1.01513 1.69949 1.37117 1.23499 1.24448 0.85697 0.78408 0.79085 0.78951 1.19192 1.20559 1.20644 1.57673 1.69961 1.21051 1.35176 1.21339 1.01709 0.80311 1.00788 1.01483 0.73864 0.72356 0.72215 1.93501 1.69796 1.60828 1.74710 1.93535 1.75308 1.57287 1.73495 1.58242 1.67246 1.25042 1.34589 1.22274 0.96208 0.82413 1.03180 1.23105 0.93029 1.00274 0.86268 1.87904 1.80631 1.26513 1.35546 1.23117 0.92268 0.83272 1.04372 1.22327 0.97407 0.97868 0.86671 0.91410 0.93986 0.94495 0.92570 0.94103 0.90227 0.90312 0.88987 0.90046 0.92853 0.85643 0.92522 0.84903 0.88161 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 8.95 71.98 0.64 -5.11 16 2 C 0.27 13.21 2.62 44.25 0.12 13.32 16 3 H 0.02 1.35 6.91 -2.39 -0.02 1.33 16 4 C -0.54 -29.13 8.37 25.60 0.21 -28.92 16 5 H 0.05 2.91 7.65 -2.91 -0.02 2.89 16 6 C 0.02 1.08 5.30 84.65 0.45 1.53 16 7 N -0.91 -50.34 11.32 21.45 0.24 -50.10 16 8 Si 0.95 43.02 29.54 68.60 2.03 45.04 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 N -1.00 -40.32 3.12 -520.45 -1.62 -41.94 16 13 C 0.10 3.48 9.53 127.77 1.22 4.70 16 14 S 2.79 109.15 6.07 -56.49 -0.34 108.81 16 15 O -1.00 -40.57 16.01 -128.00 -2.05 -42.62 16 16 O -1.01 -48.10 15.50 -128.00 -1.98 -50.08 16 17 N -1.01 -29.85 3.39 -510.85 -1.73 -31.58 16 18 C 0.08 2.30 6.60 86.49 0.57 2.87 16 19 C 0.05 1.20 7.00 72.22 0.51 1.70 16 20 O -0.39 -8.92 10.74 -148.98 -1.60 -10.52 16 21 C 0.05 0.91 6.98 72.08 0.50 1.41 16 22 C 0.08 1.82 6.57 86.36 0.57 2.39 16 23 H 0.07 3.31 6.07 -2.39 -0.01 3.29 16 24 H 0.04 1.70 6.66 -2.39 -0.02 1.68 16 25 H 0.04 1.35 6.64 -2.39 -0.02 1.33 16 26 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 2.10 7.79 -2.39 -0.02 2.08 16 29 H 0.08 2.51 6.43 -2.39 -0.02 2.50 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.08 2.55 7.24 -2.39 -0.02 2.53 16 32 H 0.05 1.36 6.64 -2.39 -0.02 1.35 16 33 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.13 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.10 2.10 7.25 -2.39 -0.02 2.09 16 37 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -67.80 305.36 -1.21 -69.01 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.06 Total: 10.07 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 4.79 Total: -6.10 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -3.11 Total: -123.62 kcal Atomic # 8 Polarization: -97.59 SS G_CDS: -5.63 Total: -103.22 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 109.15 SS G_CDS: -0.34 Total: 108.81 kcal Total: -67.80 -1.21 -69.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095086.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.648 kcal (2) G-P(sol) polarization free energy of solvation -67.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds