Wall clock time and date at job start Tue Mar 31 2020 01:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47475 * 2 1 4 4 C 1.50706 * 109.47332 * 120.00061 * 2 1 3 5 5 H 1.07999 * 119.99985 * 119.99543 * 4 2 1 6 6 C 1.37868 * 119.99674 * 300.00072 * 4 2 1 7 7 N 1.31523 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99997 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46807 * 60.00048 * 8 6 4 10 10 H 1.48497 * 109.47253 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46935 * 299.99993 * 8 6 4 12 12 N 1.46503 * 109.47264 * 240.00005 * 2 1 3 13 13 C 1.46504 * 119.99949 * 300.00312 * 12 2 1 14 14 C 1.34773 * 120.00220 * 119.99694 * 12 2 1 15 15 O 1.21494 * 119.99853 * 2.07591 * 14 12 2 16 16 C 1.48340 * 120.00110 * 182.06831 * 14 12 2 17 17 C 1.39306 * 119.56854 * 172.78593 * 16 14 12 18 18 C 1.38447 * 119.19876 * 179.97438 * 17 16 14 19 19 C 1.39918 * 118.34834 * 0.25721 * 18 17 16 20 20 C 1.47900 * 120.46244 * 179.72449 * 19 18 17 21 21 O 1.21446 * 120.00029 * 0.02562 * 20 19 18 22 22 O 1.34688 * 119.99637 * 179.97438 * 20 19 18 23 23 C 1.39763 * 119.06541 * 359.52015 * 19 18 17 24 24 N 1.31414 * 120.71334 * 0.49096 * 23 19 18 25 25 H 1.09000 * 109.46951 * 299.99972 * 1 2 3 26 26 H 1.09000 * 109.47273 * 60.00216 * 1 2 3 27 27 H 1.09002 * 109.47380 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99939 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.46566 * 263.76313 * 13 12 2 30 30 H 1.08998 * 109.47179 * 23.75836 * 13 12 2 31 31 H 1.08996 * 109.47149 * 143.76452 * 13 12 2 32 32 H 1.08002 * 120.39693 * 0.02675 * 17 16 14 33 33 H 1.07996 * 120.82092 * 179.97438 * 18 17 16 34 34 H 0.96704 * 117.00028 * 180.02562 * 22 20 19 35 35 H 1.08002 * 119.64353 * 180.22644 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8270 -0.4199 5.2204 11 1 1.8258 -2.5203 4.0077 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0357 -2.0834 15 8 3.1177 1.1160 -1.8725 16 6 3.2497 -0.7209 -3.3173 17 6 3.9212 0.0051 -4.2984 18 6 4.3444 -0.6422 -5.4467 19 6 4.0731 -2.0086 -5.5775 20 6 4.4985 -2.7451 -6.7874 21 8 5.0881 -2.1640 -7.6760 22 8 4.2329 -4.0604 -6.9033 23 6 3.3982 -2.6685 -4.5467 24 7 3.0131 -2.0175 -3.4720 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7089 1.1614 3.4844 29 1 2.4692 -2.7350 -1.0698 30 1 0.7453 -2.3294 -0.8918 31 1 1.5153 -2.2587 -2.4950 32 1 4.1101 1.0600 -4.1645 33 1 4.8669 -0.1048 -6.2242 34 1 4.5309 -4.4989 -7.7120 35 1 3.1872 -3.7239 -4.6362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063097774.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:03 Heat of formation + Delta-G solvation = -90.403804 kcal Electronic energy + Delta-G solvation = -21113.527768 eV Core-core repulsion = 17690.730217 eV Total energy + Delta-G solvation = -3422.797550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.08857 -41.02862 -39.82579 -37.29074 -37.14448 -34.98975 -33.80020 -32.89571 -31.19496 -27.77936 -27.33874 -26.89123 -24.75561 -23.77167 -22.48234 -20.76724 -19.37973 -18.59293 -18.52297 -18.11449 -17.72992 -16.94571 -16.82876 -16.42342 -16.22139 -15.83246 -15.13730 -14.77535 -14.61213 -14.44736 -14.38717 -13.92984 -13.77324 -13.45039 -12.95746 -12.83114 -12.70916 -12.63365 -12.59968 -12.19407 -12.13195 -11.96821 -11.30073 -11.19910 -11.15561 -10.53459 -10.48736 -10.22273 -9.36052 -8.14951 -6.31685 -0.98895 0.04820 1.14112 1.42488 1.44703 1.52325 1.86903 1.87896 2.13745 2.43902 2.69463 3.01303 3.12954 3.56857 3.61324 3.71144 3.88214 4.15092 4.56902 4.62477 4.75120 4.81794 4.85495 4.88365 4.93171 5.06242 5.15013 5.41304 5.43510 5.51269 5.60382 5.66271 5.99083 6.13969 6.46892 6.72212 6.74744 6.92387 7.17818 7.40855 8.89362 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033169 B = 0.003877 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.953605 B = 7219.426128 C = 7516.365859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.257 3.743 3 H 0.015 0.985 4 C -0.541 4.541 5 H 0.058 0.942 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.966 3.034 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.263 1.263 12 N -0.573 5.573 13 C 0.089 3.911 14 C 0.536 3.464 15 O -0.587 6.587 16 C 0.110 3.890 17 C -0.127 4.127 18 C -0.004 4.004 19 C -0.167 4.167 20 C 0.548 3.452 21 O -0.538 6.538 22 O -0.496 6.496 23 C 0.161 3.839 24 N -0.467 5.467 25 H 0.071 0.929 26 H 0.022 0.978 27 H 0.048 0.952 28 H 0.266 0.734 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.156 0.844 33 H 0.175 0.825 34 H 0.439 0.561 35 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.132 -11.469 -18.282 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.156 3.844 3 H 0.033 0.967 4 C -0.579 4.579 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.790 3.210 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.187 1.187 12 N -0.301 5.301 13 C -0.053 4.053 14 C 0.323 3.677 15 O -0.469 6.469 16 C -0.026 4.026 17 C -0.148 4.148 18 C -0.029 4.029 19 C -0.171 4.171 20 C 0.392 3.608 21 O -0.429 6.429 22 O -0.310 6.310 23 C 0.001 3.999 24 N -0.179 5.179 25 H 0.090 0.910 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.174 0.826 33 H 0.192 0.808 34 H 0.303 0.697 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.748 -10.864 -17.191 20.678 hybrid contribution 0.861 0.272 0.002 0.903 sum 4.609 -10.592 -17.189 20.710 Atomic orbital electron populations 1.21888 0.96681 1.00307 1.00224 1.18709 0.91983 0.92408 0.81337 0.96704 1.21497 1.32193 1.13108 0.91106 0.92403 1.25713 0.94983 0.95619 1.01913 1.70005 1.37124 1.23745 1.24610 0.85501 0.78371 0.79015 0.78082 1.20356 1.20675 1.18719 1.48242 1.46654 1.13834 1.21344 1.22289 0.99977 0.79205 1.03850 1.18575 0.79777 0.85719 0.83658 1.90708 1.59326 1.18992 1.77831 1.21342 0.95998 0.91083 0.94185 1.22123 0.97053 1.02828 0.92764 1.21915 0.92392 0.92533 0.96106 1.20391 1.05936 0.94952 0.95803 1.20310 0.74694 0.80936 0.84871 1.90910 1.40140 1.69983 1.41870 1.84486 1.75429 1.21665 1.49429 1.23889 0.88502 1.01711 0.85793 1.68254 1.18298 1.07569 1.23750 0.90983 0.95904 0.93320 0.92499 0.93120 0.92212 0.86671 0.82619 0.80765 0.69739 0.77319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.48 8.96 71.98 0.64 -5.84 16 2 C 0.26 13.70 2.63 44.25 0.12 13.82 16 3 H 0.01 0.94 6.90 -2.39 -0.02 0.92 16 4 C -0.54 -30.04 8.37 25.60 0.21 -29.82 16 5 H 0.06 3.16 7.65 -2.91 -0.02 3.14 16 6 C 0.02 0.97 5.30 84.65 0.45 1.42 16 7 N -0.92 -52.93 11.32 21.45 0.24 -52.69 16 8 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 12 N -0.57 -25.68 2.75 -829.65 -2.28 -27.97 16 13 C 0.09 3.14 8.50 127.77 1.09 4.23 16 14 C 0.54 23.34 7.66 86.93 0.67 24.01 16 15 O -0.59 -29.92 15.66 -3.70 -0.06 -29.97 16 16 C 0.11 3.53 6.63 41.96 0.28 3.81 16 17 C -0.13 -3.30 9.62 22.58 0.22 -3.09 16 18 C 0.00 -0.08 9.71 22.73 0.22 0.14 16 19 C -0.17 -3.01 5.89 -19.94 -0.12 -3.12 16 20 C 0.55 8.53 8.28 70.38 0.58 9.11 16 21 O -0.54 -11.41 17.20 20.01 0.34 -11.07 16 22 O -0.50 -4.11 12.70 -55.97 -0.71 -4.82 16 23 C 0.16 2.96 10.78 85.12 0.92 3.88 16 24 N -0.47 -12.37 6.01 -183.87 -1.11 -13.47 16 25 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 26 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 2.17 6.67 -2.39 -0.02 2.15 16 28 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 2.12 6.44 -2.39 -0.02 2.11 16 31 H 0.12 3.44 5.26 -2.76 -0.01 3.43 16 32 H 0.16 4.09 7.65 -2.91 -0.02 4.07 16 33 H 0.17 2.71 7.73 -2.91 -0.02 2.69 16 34 H 0.44 -0.31 9.11 -74.05 -0.67 -0.99 16 35 H 0.21 2.35 7.62 -2.91 -0.02 2.32 16 Total: -1.00 -73.89 304.53 4.20 -69.68 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 0.47 Total: 6.34 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 5.28 Total: 18.55 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -3.15 Total: -94.13 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -0.42 Total: -45.86 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -73.89 4.20 -69.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097774.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.720 kcal (2) G-P(sol) polarization free energy of solvation -73.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds