Wall clock time and date at job start Tue Mar 31 2020 01:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47338 * 2 1 4 4 C 1.50705 * 109.47008 * 239.99558 * 2 1 3 5 5 H 1.08004 * 119.99692 * 240.00001 * 4 2 1 6 6 C 1.37870 * 120.00037 * 60.00645 * 4 2 1 7 7 N 1.31522 * 120.00008 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00318 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46676 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47089 * 119.99397 * 8 6 4 11 11 H 1.48496 * 109.47588 * 239.99729 * 8 6 4 12 12 N 1.46505 * 109.46905 * 120.00036 * 2 1 3 13 13 C 1.46490 * 120.00114 * 59.99737 * 12 2 1 14 14 C 1.34775 * 119.99749 * 240.27448 * 12 2 1 15 15 O 1.21499 * 120.00072 * 5.43202 * 14 12 2 16 16 C 1.48348 * 120.00405 * 185.43427 * 14 12 2 17 17 C 1.39296 * 119.56753 * 186.34973 * 16 14 12 18 18 C 1.38457 * 119.19030 * 179.72936 * 17 16 14 19 19 C 1.39910 * 118.35348 * 0.52509 * 18 17 16 20 20 C 1.47891 * 120.46829 * 179.75149 * 19 18 17 21 21 O 1.21450 * 119.99828 * 359.97438 * 20 19 18 22 22 O 1.34692 * 120.00090 * 179.97438 * 20 19 18 23 23 C 1.39775 * 119.06267 * 359.73886 * 19 18 17 24 24 N 1.31409 * 120.71633 * 359.97438 * 23 19 18 25 25 H 1.08993 * 109.47157 * 300.00266 * 1 2 3 26 26 H 1.09002 * 109.47201 * 60.00342 * 1 2 3 27 27 H 1.09004 * 109.47297 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00049 * 179.97438 * 7 6 4 29 29 H 1.09009 * 109.47278 * 95.50249 * 13 12 2 30 30 H 1.09006 * 109.47357 * 215.49835 * 13 12 2 31 31 H 1.08999 * 109.47798 * 335.50539 * 13 12 2 32 32 H 1.07997 * 120.40738 * 359.97345 * 17 16 14 33 33 H 1.07999 * 120.81597 * 180.25667 * 18 17 16 34 34 H 0.96702 * 117.00244 * 180.02562 * 22 20 19 35 35 H 1.08006 * 119.63769 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 3.1473 -2.2866 -3.6036 10 1 1.1677 -1.5869 -4.8164 11 1 3.1473 -0.1861 -4.8161 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7885 -0.0340 2.0862 15 8 2.9966 1.1551 1.9487 16 6 3.3823 -0.7631 3.2336 17 6 4.0653 -0.0543 4.2192 18 6 4.6116 -0.7419 5.2896 19 6 4.4633 -2.1325 5.3314 20 6 5.0329 -2.9141 6.4502 21 8 5.6349 -2.3493 7.3410 22 8 4.8841 -4.2525 6.4812 23 6 3.7689 -2.7726 4.3009 24 7 3.2601 -2.0827 3.3048 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7089 1.1612 -3.4844 29 1 2.4634 -2.7355 1.0580 30 1 1.5280 -2.2617 2.4964 31 1 0.7383 -2.3259 0.9024 32 1 4.1641 1.0191 4.1514 33 1 5.1428 -0.2182 6.0706 34 1 5.2734 -4.7202 7.2327 35 1 3.6493 -3.8457 4.3236 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063097776.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:06 Heat of formation + Delta-G solvation = -70.012365 kcal Electronic energy + Delta-G solvation = -21118.811126 eV Core-core repulsion = 17696.897815 eV Total energy + Delta-G solvation = -3421.913311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.05991 -39.99708 -38.43622 -36.47124 -35.49861 -33.33609 -32.44125 -31.78702 -29.36379 -26.37424 -25.70842 -25.19356 -23.78005 -22.51804 -21.19442 -19.18902 -18.57441 -17.67594 -16.90456 -16.67032 -16.18984 -16.02650 -15.33829 -14.92435 -14.87096 -14.44049 -14.00283 -13.49296 -13.45511 -13.24255 -12.64285 -12.56824 -12.28334 -11.95786 -11.57225 -11.42523 -11.14605 -11.08105 -10.81129 -10.73869 -10.26720 -10.20679 -10.17472 -9.78609 -9.42933 -9.17282 -9.01154 -8.45235 -7.62000 -6.08925 -4.16915 0.03973 1.00160 2.08060 2.58575 3.10773 3.25998 3.34003 3.37541 3.61757 3.91999 4.16206 4.38912 4.49977 4.54428 4.79742 4.91304 5.07081 5.22741 5.54161 5.70856 5.78302 6.06888 6.08269 6.19497 6.38172 6.59537 6.77369 6.83008 7.02469 7.34105 7.44759 7.48077 7.60106 7.69694 7.98754 8.14819 8.44471 8.73975 8.93115 9.49527 10.96491 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030927 B = 0.003952 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.148123 B = 7082.974011 C = 7433.388163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.254 3.746 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.563 5.563 13 C 0.096 3.904 14 C 0.545 3.455 15 O -0.542 6.542 16 C 0.133 3.867 17 C -0.130 4.130 18 C -0.016 4.016 19 C -0.178 4.178 20 C 0.536 3.464 21 O -0.513 6.513 22 O -0.509 6.509 23 C 0.152 3.848 24 N -0.454 5.454 25 H 0.012 0.988 26 H 0.095 0.905 27 H 0.032 0.968 28 H 0.263 0.737 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.159 0.841 33 H 0.153 0.847 34 H 0.417 0.583 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 -9.084 15.869 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.155 3.845 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.291 5.291 13 C -0.047 4.047 14 C 0.329 3.671 15 O -0.421 6.421 16 C -0.005 4.005 17 C -0.150 4.150 18 C -0.042 4.042 19 C -0.182 4.182 20 C 0.380 3.620 21 O -0.402 6.402 22 O -0.321 6.321 23 C -0.008 4.008 24 N -0.166 5.166 25 H 0.032 0.968 26 H 0.114 0.886 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.177 0.823 33 H 0.171 0.829 34 H 0.276 0.724 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.095 -8.391 14.813 17.510 hybrid contribution 1.069 -0.513 0.324 1.229 sum 5.164 -8.904 15.137 18.305 Atomic orbital electron populations 1.22096 0.97853 0.99612 1.00993 1.19099 0.91242 0.94538 0.79670 0.91755 1.21345 1.31871 1.13056 0.90046 0.92021 1.24891 0.94918 0.94980 0.98984 1.69891 1.36371 1.22633 1.23719 0.86412 0.78615 0.79595 0.82620 1.19760 1.20900 1.20916 1.48239 1.46360 1.12500 1.22002 1.21871 1.00351 0.81712 1.00785 1.17875 0.80741 0.86402 0.82053 1.90752 1.62042 1.14164 1.75134 1.22072 0.93652 0.89895 0.94896 1.22160 0.96948 1.02991 0.92920 1.21724 0.93599 0.91933 0.96925 1.20198 1.06489 0.94316 0.97181 1.20658 0.76265 0.80524 0.84595 1.90896 1.39645 1.71522 1.38117 1.84544 1.74539 1.20780 1.52232 1.23381 0.89118 1.00992 0.87273 1.68441 1.17470 1.07475 1.23188 0.96848 0.88639 0.94876 0.92696 0.92832 0.90957 0.91805 0.82313 0.82904 0.72419 0.80769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.96 37.16 0.33 -3.17 16 2 C 0.25 6.48 2.62 -69.08 -0.18 6.30 16 3 H 0.06 1.88 6.91 -51.93 -0.36 1.52 16 4 C -0.52 -14.15 8.37 -34.44 -0.29 -14.44 16 5 H 0.06 1.66 7.65 -52.48 -0.40 1.26 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.56 -12.26 2.75 -176.19 -0.48 -12.75 16 13 C 0.10 1.73 8.32 59.84 0.50 2.22 16 14 C 0.55 11.45 7.65 -12.10 -0.09 11.35 16 15 O -0.54 -12.96 15.67 5.37 0.08 -12.88 16 16 C 0.13 2.16 6.57 -82.93 -0.54 1.62 16 17 C -0.13 -1.74 9.62 -39.11 -0.38 -2.12 16 18 C -0.02 -0.18 9.71 -38.88 -0.38 -0.56 16 19 C -0.18 -1.93 5.89 -104.75 -0.62 -2.55 16 20 C 0.54 5.29 8.28 34.68 0.29 5.57 16 21 O -0.51 -6.34 17.20 -19.23 -0.33 -6.67 16 22 O -0.51 -3.36 12.70 -40.47 -0.51 -3.87 16 23 C 0.15 1.70 10.78 -17.16 -0.18 1.51 16 24 N -0.45 -6.55 6.15 -9.46 -0.06 -6.60 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 27 H 0.03 0.73 6.67 -51.93 -0.35 0.38 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 29 H 0.05 0.95 7.99 -51.92 -0.41 0.54 16 30 H 0.07 1.14 5.79 -51.93 -0.30 0.84 16 31 H 0.06 1.15 6.44 -51.93 -0.33 0.81 16 32 H 0.16 2.05 7.64 -52.49 -0.40 1.65 16 33 H 0.15 1.42 7.73 -52.49 -0.41 1.02 16 34 H 0.42 0.86 9.11 45.56 0.42 1.28 16 35 H 0.18 1.45 7.62 -52.48 -0.40 1.05 16 LS Contribution 304.79 15.07 4.59 4.59 Total: -1.00 -32.71 304.79 -5.56 -38.28 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -2.82 Total: 0.83 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -1.64 Total: 7.41 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.08 Total: -43.63 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.76 Total: -23.42 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.71 -5.56 -38.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097776.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.735 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds