Wall clock time and date at job start Tue Mar 31 2020 01:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47338 * 2 1 4 4 C 1.50705 * 109.47008 * 239.99558 * 2 1 3 5 5 H 1.08004 * 119.99692 * 240.00001 * 4 2 1 6 6 C 1.37870 * 120.00037 * 60.00645 * 4 2 1 7 7 N 1.31522 * 120.00008 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00318 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46676 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47089 * 119.99397 * 8 6 4 11 11 H 1.48496 * 109.47588 * 239.99729 * 8 6 4 12 12 N 1.46505 * 109.46905 * 120.00036 * 2 1 3 13 13 C 1.46490 * 120.00114 * 59.99737 * 12 2 1 14 14 C 1.34775 * 119.99749 * 240.27448 * 12 2 1 15 15 O 1.21499 * 120.00072 * 5.43202 * 14 12 2 16 16 C 1.48348 * 120.00405 * 185.43427 * 14 12 2 17 17 C 1.39296 * 119.56753 * 186.34973 * 16 14 12 18 18 C 1.38457 * 119.19030 * 179.72936 * 17 16 14 19 19 C 1.39910 * 118.35348 * 0.52509 * 18 17 16 20 20 C 1.47891 * 120.46829 * 179.75149 * 19 18 17 21 21 O 1.21450 * 119.99828 * 359.97438 * 20 19 18 22 22 O 1.34692 * 120.00090 * 179.97438 * 20 19 18 23 23 C 1.39775 * 119.06267 * 359.73886 * 19 18 17 24 24 N 1.31409 * 120.71633 * 359.97438 * 23 19 18 25 25 H 1.08993 * 109.47157 * 300.00266 * 1 2 3 26 26 H 1.09002 * 109.47201 * 60.00342 * 1 2 3 27 27 H 1.09004 * 109.47297 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00049 * 179.97438 * 7 6 4 29 29 H 1.09009 * 109.47278 * 95.50249 * 13 12 2 30 30 H 1.09006 * 109.47357 * 215.49835 * 13 12 2 31 31 H 1.08999 * 109.47798 * 335.50539 * 13 12 2 32 32 H 1.07997 * 120.40738 * 359.97345 * 17 16 14 33 33 H 1.07999 * 120.81597 * 180.25667 * 18 17 16 34 34 H 0.96702 * 117.00244 * 180.02562 * 22 20 19 35 35 H 1.08006 * 119.63769 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 3.1473 -2.2866 -3.6036 10 1 1.1677 -1.5869 -4.8164 11 1 3.1473 -0.1861 -4.8161 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7885 -0.0340 2.0862 15 8 2.9966 1.1551 1.9487 16 6 3.3823 -0.7631 3.2336 17 6 4.0653 -0.0543 4.2192 18 6 4.6116 -0.7419 5.2896 19 6 4.4633 -2.1325 5.3314 20 6 5.0329 -2.9141 6.4502 21 8 5.6349 -2.3493 7.3410 22 8 4.8841 -4.2525 6.4812 23 6 3.7689 -2.7726 4.3009 24 7 3.2601 -2.0827 3.3048 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7089 1.1612 -3.4844 29 1 2.4634 -2.7355 1.0580 30 1 1.5280 -2.2617 2.4964 31 1 0.7383 -2.3259 0.9024 32 1 4.1641 1.0191 4.1514 33 1 5.1428 -0.2182 6.0706 34 1 5.2734 -4.7202 7.2327 35 1 3.6493 -3.8457 4.3236 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063097776.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:06 Heat of formation + Delta-G solvation = -92.585383 kcal Electronic energy + Delta-G solvation = -21119.789965 eV Core-core repulsion = 17696.897815 eV Total energy + Delta-G solvation = -3422.892151 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.07591 -41.02737 -39.82877 -37.29009 -37.14682 -34.97788 -33.79136 -32.89497 -31.19814 -27.78224 -27.33406 -26.89630 -24.74921 -23.77250 -22.48319 -20.75726 -19.38356 -18.62131 -18.50017 -18.10170 -17.71709 -16.95140 -16.82441 -16.40361 -16.24407 -15.82678 -15.14339 -14.76925 -14.61497 -14.41860 -14.35379 -13.93419 -13.75483 -13.45994 -12.97676 -12.85027 -12.70164 -12.62450 -12.59491 -12.19574 -12.11437 -11.97243 -11.31020 -11.19337 -11.13850 -10.54613 -10.48639 -10.30402 -9.36983 -8.15181 -6.31769 -0.98890 0.05572 1.13934 1.42036 1.43533 1.55240 1.85807 1.88140 2.14516 2.43890 2.69902 3.01884 3.13005 3.56944 3.61601 3.71357 3.89540 4.15075 4.55426 4.62708 4.75285 4.79839 4.85485 4.88493 4.92263 5.05364 5.15616 5.35921 5.43843 5.50990 5.59795 5.66000 5.99335 6.13664 6.48233 6.72035 6.75253 6.92225 7.17241 7.40903 8.89613 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030927 B = 0.003952 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.148123 B = 7082.974011 C = 7433.388163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.258 3.742 3 H 0.015 0.985 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.966 3.034 9 H -0.266 1.266 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.574 5.574 13 C 0.102 3.898 14 C 0.537 3.463 15 O -0.586 6.586 16 C 0.109 3.891 17 C -0.126 4.126 18 C -0.005 4.005 19 C -0.167 4.167 20 C 0.548 3.452 21 O -0.537 6.537 22 O -0.496 6.496 23 C 0.161 3.839 24 N -0.467 5.467 25 H 0.021 0.979 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.266 0.734 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.156 0.844 33 H 0.175 0.825 34 H 0.439 0.561 35 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 -11.838 17.360 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.156 3.844 3 H 0.033 0.967 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.199 1.199 11 H -0.210 1.210 12 N -0.302 5.302 13 C -0.040 4.040 14 C 0.324 3.676 15 O -0.468 6.468 16 C -0.028 4.028 17 C -0.147 4.147 18 C -0.031 4.031 19 C -0.171 4.171 20 C 0.392 3.608 21 O -0.429 6.429 22 O -0.310 6.310 23 C 0.001 3.999 24 N -0.179 5.179 25 H 0.040 0.960 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.174 0.826 33 H 0.192 0.808 34 H 0.303 0.697 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.941 -11.200 16.333 20.411 hybrid contribution 0.874 0.265 0.013 0.913 sum 5.815 -10.935 16.346 20.508 Atomic orbital electron populations 1.21889 0.96794 1.00288 1.00184 1.18713 0.92027 0.92384 0.81242 0.96711 1.21556 1.32060 1.13068 0.90982 0.92262 1.25718 0.94999 0.95622 1.01936 1.70023 1.37188 1.23820 1.24483 0.85381 0.78251 0.78454 0.78772 1.19065 1.19856 1.21007 1.48219 1.46900 1.13849 1.21249 1.21998 1.00092 0.79454 1.02438 1.18572 0.79911 0.86226 0.82879 1.90706 1.63340 1.16239 1.76498 1.21336 0.96188 0.90857 0.94378 1.22132 0.96645 1.02995 0.92968 1.21912 0.92585 0.92337 0.96216 1.20396 1.05106 0.94335 0.97227 1.20308 0.75533 0.81381 0.83581 1.90909 1.40767 1.72320 1.38894 1.84487 1.74139 1.18958 1.53437 1.23843 0.87966 1.02093 0.86036 1.68253 1.18504 1.06516 1.24651 0.96000 0.91007 0.93297 0.92524 0.92634 0.88419 0.92093 0.82591 0.80770 0.69740 0.77435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.51 8.96 71.98 0.64 -5.87 16 2 C 0.26 13.68 2.62 44.24 0.12 13.80 16 3 H 0.01 0.93 6.91 -2.39 -0.02 0.91 16 4 C -0.54 -29.67 8.37 25.60 0.21 -29.46 16 5 H 0.06 3.22 7.65 -2.91 -0.02 3.19 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -52.73 11.32 21.45 0.24 -52.49 16 8 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 N -0.57 -25.65 2.75 -829.64 -2.28 -27.93 16 13 C 0.10 3.60 8.32 127.77 1.06 4.67 16 14 C 0.54 23.36 7.65 86.94 0.67 24.03 16 15 O -0.59 -29.70 15.67 -3.71 -0.06 -29.76 16 16 C 0.11 3.51 6.57 41.96 0.28 3.79 16 17 C -0.13 -3.31 9.62 22.58 0.22 -3.10 16 18 C -0.01 -0.10 9.71 22.73 0.22 0.12 16 19 C -0.17 -3.05 5.89 -19.94 -0.12 -3.17 16 20 C 0.55 8.67 8.28 70.38 0.58 9.26 16 21 O -0.54 -11.51 17.20 20.00 0.34 -11.17 16 22 O -0.50 -4.25 12.70 -56.01 -0.71 -4.96 16 23 C 0.16 3.03 10.78 85.13 0.92 3.95 16 24 N -0.47 -12.60 6.15 -183.86 -1.13 -13.73 16 25 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 27 H 0.05 2.18 6.67 -2.39 -0.02 2.16 16 28 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.06 1.92 7.99 -2.38 -0.02 1.90 16 30 H 0.10 2.93 5.79 -2.38 -0.01 2.91 16 31 H 0.06 2.15 6.44 -2.39 -0.02 2.13 16 32 H 0.16 4.11 7.64 -2.91 -0.02 4.08 16 33 H 0.17 2.74 7.73 -2.91 -0.02 2.72 16 34 H 0.44 -0.21 9.11 -74.06 -0.67 -0.89 16 35 H 0.21 2.46 7.62 -2.91 -0.02 2.44 16 Total: -1.00 -73.37 304.79 4.15 -69.22 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 0.47 Total: 6.20 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 5.25 Total: 19.39 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -3.17 Total: -94.15 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -0.43 Total: -45.89 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -73.37 4.15 -69.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097776.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.361 kcal (2) G-P(sol) polarization free energy of solvation -73.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds