Wall clock time and date at job start Tue Mar 31 2020 01:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47378 * 2 1 4 4 C 1.50703 * 109.47238 * 240.00629 * 2 1 3 5 5 H 1.07996 * 120.00316 * 240.00411 * 4 2 1 6 6 C 1.37877 * 119.99942 * 59.99568 * 4 2 1 7 7 N 1.31520 * 120.00138 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99842 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47598 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47272 * 120.00400 * 8 6 4 11 11 H 1.48499 * 109.47139 * 239.99762 * 8 6 4 12 12 N 1.46497 * 109.47670 * 120.00288 * 2 1 3 13 13 C 1.46506 * 119.99536 * 59.99851 * 12 2 1 14 14 C 1.34774 * 120.00669 * 240.00267 * 12 2 1 15 15 O 1.21528 * 119.99534 * 4.81429 * 14 12 2 16 16 C 1.48018 * 120.00339 * 184.54416 * 14 12 2 17 17 C 1.39853 * 120.45664 * 321.91487 * 16 14 12 18 18 C 1.38463 * 118.35592 * 180.02562 * 17 16 14 19 19 C 1.39329 * 119.18699 * 359.97438 * 18 17 16 20 20 C 1.48243 * 119.57474 * 179.97438 * 19 18 17 21 21 O 1.21403 * 120.00100 * 0.02562 * 20 19 18 22 22 O 1.34661 * 120.00052 * 180.02562 * 20 19 18 23 23 N 1.32744 * 120.84877 * 0.02562 * 19 18 17 24 24 C 1.31402 * 121.79966 * 359.70090 * 23 19 18 25 25 H 1.09001 * 109.46976 * 59.99195 * 1 2 3 26 26 H 1.09000 * 109.47013 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46653 * 299.99469 * 1 2 3 28 28 H 0.96996 * 119.99957 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46827 * 264.96414 * 13 12 2 30 30 H 1.08997 * 109.47430 * 24.96421 * 13 12 2 31 31 H 1.08997 * 109.47257 * 144.96613 * 13 12 2 32 32 H 1.07999 * 120.82420 * 0.02562 * 17 16 14 33 33 H 1.07997 * 120.40237 * 179.97438 * 18 17 16 34 34 H 0.96702 * 117.00080 * 180.02562 * 22 20 19 35 35 H 1.08003 * 119.63567 * 180.30393 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3213 -1.1200 -4.0080 9 1 3.1465 -2.2866 -3.6041 10 1 1.1660 -1.5863 -4.8163 11 1 3.1464 -0.1869 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4278 14 6 2.7933 -0.0358 2.0833 15 8 3.0148 1.1502 1.9373 16 6 3.3695 -0.7596 3.2387 17 6 2.6266 -1.7413 3.9023 18 6 3.2079 -2.3909 4.9781 19 6 4.5032 -2.0477 5.3599 20 6 5.1337 -2.7373 6.5108 21 8 4.5220 -3.5953 7.1137 22 8 6.3850 -2.4120 6.8875 23 7 5.1796 -1.1105 4.7069 24 6 4.6651 -0.4752 3.6782 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7094 1.1621 -3.4843 29 1 0.7882 -2.1449 2.0740 30 1 1.4422 -2.5741 0.4752 31 1 2.4996 -2.6044 1.9066 32 1 1.6243 -1.9868 3.5835 33 1 2.6640 -3.1542 5.5146 34 1 6.7540 -2.8892 7.6433 35 1 5.2485 0.2779 3.1694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063097781.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:23 Heat of formation + Delta-G solvation = -74.498967 kcal Electronic energy + Delta-G solvation = -21094.061182 eV Core-core repulsion = 17671.953317 eV Total energy + Delta-G solvation = -3422.107865 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.08065 -39.98227 -38.61519 -36.40137 -35.59962 -33.60355 -32.41290 -31.77948 -29.40008 -26.76131 -25.81713 -25.30585 -23.83711 -22.47770 -21.26155 -19.11082 -18.63215 -17.78655 -17.03350 -16.60159 -16.20952 -16.02394 -15.70665 -14.98525 -14.70552 -14.50004 -13.90356 -13.78974 -13.53235 -13.31728 -12.70235 -12.58553 -12.34199 -11.84787 -11.76335 -11.53697 -11.17683 -11.15374 -10.93888 -10.83898 -10.35712 -10.27693 -10.07350 -10.00697 -9.47234 -9.32210 -9.17143 -8.52841 -7.81450 -6.16978 -4.25873 0.08773 0.96974 2.04828 2.56692 3.11372 3.20576 3.29304 3.31517 3.54589 3.75369 4.04285 4.31421 4.60226 4.64206 4.70653 4.76304 5.09982 5.15300 5.47219 5.53032 5.65338 5.73733 5.84048 6.10224 6.19628 6.25427 6.63981 6.70689 6.92810 7.21788 7.33272 7.39319 7.60173 7.69502 7.88678 8.05570 8.30112 8.63208 8.82331 9.41139 10.88415 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031430 B = 0.003842 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.641130 B = 7286.396483 C = 7381.226732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.066 0.934 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.579 5.579 13 C 0.073 3.927 14 C 0.545 3.455 15 O -0.535 6.535 16 C -0.129 4.129 17 C -0.062 4.062 18 C -0.110 4.110 19 C 0.091 3.909 20 C 0.546 3.454 21 O -0.508 6.508 22 O -0.491 6.491 23 N -0.437 5.437 24 C 0.146 3.854 25 H 0.095 0.905 26 H 0.031 0.969 27 H 0.013 0.987 28 H 0.264 0.736 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.412 0.588 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.963 -7.859 14.108 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.084 0.916 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.309 5.309 13 C -0.070 4.070 14 C 0.330 3.670 15 O -0.414 6.414 16 C -0.134 4.134 17 C -0.088 4.088 18 C -0.131 4.131 19 C -0.046 4.046 20 C 0.388 3.612 21 O -0.396 6.396 22 O -0.301 6.301 23 N -0.148 5.148 24 C -0.015 4.015 25 H 0.114 0.886 26 H 0.050 0.950 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.178 0.822 33 H 0.172 0.828 34 H 0.271 0.729 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.490 -6.964 13.987 16.257 hybrid contribution -0.337 -1.089 -0.660 1.318 sum 4.153 -8.054 13.326 16.115 Atomic orbital electron populations 1.22094 0.97809 0.99562 1.01064 1.19067 0.91163 0.94583 0.79423 0.91597 1.21327 1.32180 1.13239 0.90148 0.92057 1.24889 0.94806 0.94932 0.99026 1.69883 1.36116 1.22462 1.23868 0.86418 0.78636 0.79597 0.82624 1.19777 1.20867 1.20821 1.48246 1.47664 1.11675 1.23283 1.21990 0.98614 0.83340 1.03082 1.18008 0.80058 0.86860 0.82102 1.90778 1.60903 1.14593 1.75116 1.21663 0.96711 0.97020 0.98050 1.22266 1.01247 0.92365 0.92953 1.22024 0.94191 1.00247 0.96612 1.20063 0.92229 0.96716 0.95546 1.20531 0.79448 0.79243 0.81962 1.90899 1.63876 1.31021 1.53762 1.84699 1.29852 1.64014 1.51493 1.67713 1.35796 1.05125 1.06165 1.23012 0.91791 0.95954 0.90771 0.88625 0.95028 0.96832 0.92584 0.93295 0.89355 0.92432 0.82161 0.82753 0.72938 0.80619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.97 37.16 0.33 -2.98 16 2 C 0.26 6.20 2.63 -69.08 -0.18 6.02 16 3 H 0.07 1.85 6.91 -51.93 -0.36 1.49 16 4 C -0.53 -13.62 7.96 -34.44 -0.27 -13.90 16 5 H 0.06 1.55 7.42 -52.49 -0.39 1.16 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.14 11.32 55.43 0.63 -23.52 16 8 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.58 -11.45 2.75 -176.31 -0.49 -11.94 16 13 C 0.07 1.10 7.82 59.85 0.47 1.57 16 14 C 0.54 10.60 7.38 -12.25 -0.09 10.51 16 15 O -0.54 -12.44 16.26 5.34 0.09 -12.35 16 16 C -0.13 -1.95 5.28 -104.72 -0.55 -2.50 16 17 C -0.06 -0.75 7.69 -38.89 -0.30 -1.05 16 18 C -0.11 -1.23 9.62 -39.09 -0.38 -1.60 16 19 C 0.09 1.16 6.75 -82.95 -0.56 0.60 16 20 C 0.55 6.36 8.33 34.84 0.29 6.65 16 21 O -0.51 -6.55 17.10 -19.19 -0.33 -6.88 16 22 O -0.49 -4.60 13.24 -40.39 -0.53 -5.14 16 23 N -0.44 -6.16 10.10 -9.49 -0.10 -6.25 16 24 C 0.15 2.11 10.79 -17.18 -0.19 1.93 16 25 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 26 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.05 0.60 6.86 -51.93 -0.36 0.25 16 30 H 0.09 1.43 7.10 -51.93 -0.37 1.07 16 31 H 0.06 0.74 5.84 -51.93 -0.30 0.44 16 32 H 0.16 1.62 5.28 -52.49 -0.28 1.34 16 33 H 0.15 1.39 7.63 -52.49 -0.40 0.99 16 34 H 0.41 1.63 9.11 45.56 0.42 2.04 16 35 H 0.18 2.43 8.05 -52.48 -0.42 2.01 16 LS Contribution 304.52 15.07 4.59 4.59 Total: -1.00 -32.04 304.52 -5.42 -37.46 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -2.73 Total: 1.87 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -1.52 Total: 6.89 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.05 Total: -41.71 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.78 Total: -24.38 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.04 -5.42 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097781.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.041 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds