Wall clock time and date at job start Tue Mar 31 2020 01:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47378 * 2 1 4 4 C 1.50703 * 109.47238 * 240.00629 * 2 1 3 5 5 H 1.07996 * 120.00316 * 240.00411 * 4 2 1 6 6 C 1.37877 * 119.99942 * 59.99568 * 4 2 1 7 7 N 1.31520 * 120.00138 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99842 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47598 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47272 * 120.00400 * 8 6 4 11 11 H 1.48499 * 109.47139 * 239.99762 * 8 6 4 12 12 N 1.46497 * 109.47670 * 120.00288 * 2 1 3 13 13 C 1.46506 * 119.99536 * 59.99851 * 12 2 1 14 14 C 1.34774 * 120.00669 * 240.00267 * 12 2 1 15 15 O 1.21528 * 119.99534 * 4.81429 * 14 12 2 16 16 C 1.48018 * 120.00339 * 184.54416 * 14 12 2 17 17 C 1.39853 * 120.45664 * 321.91487 * 16 14 12 18 18 C 1.38463 * 118.35592 * 180.02562 * 17 16 14 19 19 C 1.39329 * 119.18699 * 359.97438 * 18 17 16 20 20 C 1.48243 * 119.57474 * 179.97438 * 19 18 17 21 21 O 1.21403 * 120.00100 * 0.02562 * 20 19 18 22 22 O 1.34661 * 120.00052 * 180.02562 * 20 19 18 23 23 N 1.32744 * 120.84877 * 0.02562 * 19 18 17 24 24 C 1.31402 * 121.79966 * 359.70090 * 23 19 18 25 25 H 1.09001 * 109.46976 * 59.99195 * 1 2 3 26 26 H 1.09000 * 109.47013 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46653 * 299.99469 * 1 2 3 28 28 H 0.96996 * 119.99957 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46827 * 264.96414 * 13 12 2 30 30 H 1.08997 * 109.47430 * 24.96421 * 13 12 2 31 31 H 1.08997 * 109.47257 * 144.96613 * 13 12 2 32 32 H 1.07999 * 120.82420 * 0.02562 * 17 16 14 33 33 H 1.07997 * 120.40237 * 179.97438 * 18 17 16 34 34 H 0.96702 * 117.00080 * 180.02562 * 22 20 19 35 35 H 1.08003 * 119.63567 * 180.30393 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3213 -1.1200 -4.0080 9 1 3.1465 -2.2866 -3.6041 10 1 1.1660 -1.5863 -4.8163 11 1 3.1464 -0.1869 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4278 14 6 2.7933 -0.0358 2.0833 15 8 3.0148 1.1502 1.9373 16 6 3.3695 -0.7596 3.2387 17 6 2.6266 -1.7413 3.9023 18 6 3.2079 -2.3909 4.9781 19 6 4.5032 -2.0477 5.3599 20 6 5.1337 -2.7373 6.5108 21 8 4.5220 -3.5953 7.1137 22 8 6.3850 -2.4120 6.8875 23 7 5.1796 -1.1105 4.7069 24 6 4.6651 -0.4752 3.6782 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7094 1.1621 -3.4843 29 1 0.7882 -2.1449 2.0740 30 1 1.4422 -2.5741 0.4752 31 1 2.4996 -2.6044 1.9066 32 1 1.6243 -1.9868 3.5835 33 1 2.6640 -3.1542 5.5146 34 1 6.7540 -2.8892 7.6433 35 1 5.2485 0.2779 3.1694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063097781.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:22 Heat of formation + Delta-G solvation = -97.384093 kcal Electronic energy + Delta-G solvation = -21095.053555 eV Core-core repulsion = 17671.953317 eV Total energy + Delta-G solvation = -3423.100238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.13003 -41.08013 -39.91934 -37.28770 -37.20966 -35.17226 -33.82729 -32.86733 -31.11914 -28.03856 -27.31452 -26.94075 -24.91489 -23.67476 -22.62502 -20.63145 -19.53137 -18.71545 -18.59813 -18.11880 -17.55676 -17.27404 -16.90417 -16.40436 -16.14839 -15.74292 -15.19513 -14.85869 -14.67096 -14.58637 -14.35194 -13.84922 -13.61553 -13.55652 -13.01548 -12.87857 -12.71100 -12.64195 -12.63182 -12.20417 -12.11279 -12.09375 -11.28689 -11.17229 -11.05781 -10.68059 -10.54436 -10.45525 -9.43164 -8.15485 -6.31808 -0.94876 -0.01491 1.06342 1.41936 1.44529 1.54704 1.72318 1.78229 2.16163 2.44044 2.60538 3.04534 3.13631 3.40383 3.61711 3.75083 3.83958 4.11522 4.35155 4.53433 4.60736 4.71567 4.77649 4.84225 4.91360 5.00996 5.05340 5.23744 5.38187 5.46919 5.54219 5.65431 6.00730 6.14542 6.40537 6.66821 6.75314 6.92128 7.16687 7.40927 8.89200 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031430 B = 0.003842 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.641130 B = 7286.396483 C = 7381.226732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.013 0.987 4 C -0.539 4.539 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.265 1.265 10 H -0.275 1.275 11 H -0.287 1.287 12 N -0.585 5.585 13 C 0.067 3.933 14 C 0.542 3.458 15 O -0.588 6.588 16 C -0.144 4.144 17 C -0.044 4.044 18 C -0.095 4.095 19 C 0.084 3.916 20 C 0.553 3.447 21 O -0.520 6.520 22 O -0.492 6.492 23 N -0.449 5.449 24 C 0.141 3.859 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.023 0.977 28 H 0.265 0.735 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.186 0.814 33 H 0.185 0.815 34 H 0.436 0.564 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 -10.578 15.484 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.031 0.969 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.213 1.213 12 N -0.314 5.314 13 C -0.075 4.075 14 C 0.329 3.671 15 O -0.470 6.470 16 C -0.149 4.149 17 C -0.070 4.070 18 C -0.115 4.115 19 C -0.052 4.052 20 C 0.395 3.605 21 O -0.409 6.409 22 O -0.304 6.304 23 N -0.160 5.160 24 C -0.020 4.020 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.203 0.797 33 H 0.202 0.798 34 H 0.298 0.702 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.441 -9.732 15.402 18.752 hybrid contribution -0.249 -0.261 -0.967 1.032 sum 4.192 -9.994 14.435 18.050 Atomic orbital electron populations 1.21881 0.96644 1.00462 1.00174 1.18646 0.91992 0.92337 0.81064 0.96877 1.21590 1.32010 1.13185 0.90964 0.91878 1.25689 0.95016 0.95579 1.01929 1.70022 1.37207 1.23783 1.24442 0.85428 0.78191 0.78498 0.79015 1.18903 1.20055 1.21314 1.48183 1.47710 1.13463 1.22028 1.22302 1.01131 0.80421 1.03611 1.18585 0.79214 0.86443 0.82843 1.90741 1.62513 1.17072 1.76649 1.21228 0.97400 0.98762 0.97527 1.22475 1.01698 0.90580 0.92236 1.22294 0.93452 0.99991 0.95786 1.20497 0.93012 0.96127 0.95577 1.20291 0.79902 0.78802 0.81497 1.90902 1.64362 1.31541 1.54119 1.84652 1.28816 1.64282 1.52685 1.67724 1.36258 1.05852 1.06192 1.22923 0.91822 0.96142 0.91100 0.91379 0.93029 0.95829 0.92598 0.89678 0.90460 0.89866 0.79735 0.79792 0.70186 0.81255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.05 8.97 71.98 0.65 -5.40 16 2 C 0.26 12.91 2.63 44.25 0.12 13.02 16 3 H 0.01 0.79 6.91 -2.39 -0.02 0.77 16 4 C -0.54 -27.98 7.96 25.60 0.20 -27.77 16 5 H 0.06 3.17 7.42 -2.91 -0.02 3.15 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.92 -51.20 11.32 21.45 0.24 -50.95 16 8 Si 0.96 41.71 29.54 68.60 2.03 43.74 16 9 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 12 N -0.58 -22.97 2.75 -830.02 -2.28 -25.25 16 13 C 0.07 1.84 7.82 127.77 1.00 2.84 16 14 C 0.54 21.36 7.38 86.84 0.64 22.00 16 15 O -0.59 -28.74 16.26 -3.81 -0.06 -28.81 16 16 C -0.14 -4.19 5.28 -19.93 -0.11 -4.29 16 17 C -0.04 -0.91 7.69 22.71 0.17 -0.74 16 18 C -0.10 -1.76 9.62 22.59 0.22 -1.54 16 19 C 0.08 1.92 6.75 41.93 0.28 2.20 16 20 C 0.55 11.29 8.33 70.48 0.59 11.88 16 21 O -0.52 -11.76 17.10 20.15 0.34 -11.42 16 22 O -0.49 -7.94 13.24 -55.70 -0.74 -8.67 16 23 N -0.45 -12.03 10.10 -183.95 -1.86 -13.89 16 24 C 0.14 4.04 10.79 85.12 0.92 4.96 16 25 H 0.07 3.49 6.07 -2.39 -0.01 3.48 16 26 H 0.05 2.08 7.67 -2.39 -0.02 2.06 16 27 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 29 H 0.09 1.73 6.86 -2.38 -0.02 1.72 16 30 H 0.08 2.33 7.10 -2.39 -0.02 2.31 16 31 H 0.08 1.86 5.84 -2.39 -0.01 1.84 16 32 H 0.19 2.86 5.28 -2.91 -0.02 2.84 16 33 H 0.18 2.38 7.63 -2.91 -0.02 2.36 16 34 H 0.44 2.18 9.11 -74.06 -0.67 1.50 16 35 H 0.17 4.91 8.05 -2.91 -0.02 4.89 16 Total: -1.00 -71.79 304.52 3.28 -68.52 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.48 Total: 8.19 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 5.13 Total: 18.56 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -3.90 Total: -90.10 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -0.45 Total: -48.90 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -71.79 3.28 -68.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097781.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.869 kcal (2) G-P(sol) polarization free energy of solvation -71.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds