Wall clock time and date at job start Tue Mar 31 2020 01:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47616 * 2 1 4 4 C 1.50702 * 109.46947 * 120.00330 * 2 1 3 5 5 H 1.07995 * 120.00086 * 119.99909 * 4 2 1 6 6 C 1.37878 * 119.99611 * 299.99337 * 4 2 1 7 7 N 1.31514 * 120.00061 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00298 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47367 * 89.99460 * 8 6 4 10 10 H 1.48494 * 109.47209 * 209.99596 * 8 6 4 11 11 H 1.48506 * 109.46914 * 329.99777 * 8 6 4 12 12 N 1.46503 * 109.47186 * 240.00026 * 2 1 3 13 13 C 1.46503 * 119.99935 * 300.00151 * 12 2 1 14 14 C 1.34777 * 120.00174 * 120.00048 * 12 2 1 15 15 O 1.21501 * 120.00040 * 2.10006 * 14 12 2 16 16 C 1.48227 * 120.00076 * 182.09473 * 14 12 2 17 17 C 1.39642 * 119.65407 * 172.79913 * 16 14 12 18 18 C 1.38541 * 119.25371 * 179.97438 * 17 16 14 19 19 C 1.38581 * 118.55737 * 359.73783 * 18 17 16 20 20 C 1.39624 * 119.24030 * 0.50698 * 19 18 17 21 21 C 1.48124 * 119.65776 * 179.76797 * 20 19 18 22 22 O 1.21429 * 120.00181 * 359.72295 * 21 20 19 23 23 O 1.34673 * 120.00337 * 179.44638 * 21 20 19 24 24 N 1.32322 * 119.65190 * 352.77703 * 16 14 12 25 25 H 1.08994 * 109.47366 * 300.00348 * 1 2 3 26 26 H 1.09003 * 109.46874 * 60.00195 * 1 2 3 27 27 H 1.09000 * 109.47490 * 179.97438 * 1 2 3 28 28 H 0.96991 * 120.00586 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47515 * 263.77805 * 13 12 2 30 30 H 1.08995 * 109.47165 * 23.77645 * 13 12 2 31 31 H 1.08994 * 109.47142 * 143.77476 * 13 12 2 32 32 H 1.08001 * 120.37521 * 359.95069 * 17 16 14 33 33 H 1.08006 * 120.71730 * 180.02562 * 18 17 16 34 34 H 1.07996 * 120.38450 * 180.24842 * 19 18 17 35 35 H 0.96693 * 117.00095 * 180.27583 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1371 -0.8596 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8472 2.1766 1.4920 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0834 15 8 3.1183 1.1159 -1.8722 16 6 3.2489 -0.7202 -3.3166 17 6 3.9225 0.0059 -4.3011 18 6 4.3452 -0.6424 -5.4502 19 6 4.0873 -1.9978 -5.5791 20 6 3.4043 -2.6623 -4.5586 21 6 3.1192 -4.1099 -4.6891 22 8 3.4746 -4.7116 -5.6822 23 8 2.4708 -4.7601 -3.7040 24 7 3.0136 -2.0129 -3.4729 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9025 -0.5285 4.4375 29 1 2.4691 -2.7351 -1.0696 30 1 0.7452 -2.3294 -0.8920 31 1 1.5155 -2.2588 -2.4950 32 1 4.1114 1.0609 -4.1684 33 1 4.8686 -0.1039 -6.2265 34 1 4.4072 -2.5333 -6.4608 35 1 2.3111 -5.7050 -3.8326 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063097798.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:09 Heat of formation + Delta-G solvation = -55.157524 kcal Electronic energy + Delta-G solvation = -21579.023133 eV Core-core repulsion = 18157.753976 eV Total energy + Delta-G solvation = -3421.269157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11134 -39.90812 -38.54881 -36.31961 -35.65630 -33.35742 -32.48467 -31.83346 -30.13356 -26.25197 -25.60272 -25.22334 -24.62936 -22.39558 -21.09910 -19.08692 -18.55657 -17.45435 -17.15073 -16.57657 -16.22900 -16.03063 -15.68273 -15.34749 -15.04719 -14.36597 -13.93355 -13.53195 -13.48421 -13.14446 -12.90613 -12.34481 -12.28352 -12.17469 -11.80294 -11.73561 -11.70182 -11.14317 -11.07657 -10.69345 -10.27455 -10.13657 -9.89359 -9.59975 -9.48474 -9.31957 -9.01502 -8.62643 -7.72021 -6.13058 -4.13846 0.19390 0.70953 2.10006 2.61815 3.06050 3.24100 3.37300 3.39208 3.49252 3.85375 4.00818 4.35816 4.59121 4.64892 4.71923 4.78422 5.16191 5.21889 5.28634 5.67269 5.76336 6.04928 6.12221 6.18130 6.22892 6.31538 6.39750 6.50149 6.73891 6.85805 7.07544 7.23710 7.36898 7.61619 7.71831 8.13739 8.45105 8.73227 8.90256 9.47072 10.99710 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025185 B = 0.005033 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.506013 B = 5561.812292 C = 6260.020105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.226 3.774 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.080 0.920 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.558 5.558 13 C 0.087 3.913 14 C 0.553 3.447 15 O -0.546 6.546 16 C 0.093 3.907 17 C -0.082 4.082 18 C -0.089 4.089 19 C -0.093 4.093 20 C 0.075 3.925 21 C 0.548 3.452 22 O -0.511 6.511 23 O -0.487 6.487 24 N -0.395 5.395 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.058 0.942 28 H 0.266 0.734 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.791 -3.750 -18.511 18.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.124 3.876 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.098 0.902 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.286 5.286 13 C -0.056 4.056 14 C 0.338 3.662 15 O -0.425 6.425 16 C -0.049 4.049 17 C -0.103 4.103 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.063 4.063 21 C 0.390 3.610 22 O -0.400 6.400 23 O -0.296 6.296 24 N -0.110 5.110 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.175 0.825 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 0.652 -3.393 -17.697 18.031 hybrid contribution -0.245 0.367 -0.381 0.583 sum 0.407 -3.026 -18.078 18.334 Atomic orbital electron populations 1.22464 0.98798 1.01339 0.99320 1.19417 0.90192 0.95215 0.82738 0.91853 1.21136 1.32736 1.14243 0.88293 0.90191 1.24859 0.95677 0.96580 0.95581 1.69870 1.45202 1.40164 0.97952 0.86922 0.80467 0.83843 0.77493 1.20369 1.22124 1.18792 1.47874 1.46621 1.12705 1.21429 1.22147 1.00607 0.80785 1.02045 1.17739 0.80296 0.85822 0.82337 1.90744 1.58057 1.17031 1.76634 1.21680 0.97530 0.89317 0.96369 1.22485 0.93053 1.02699 0.92060 1.21633 0.98310 0.93732 0.97820 1.22221 0.95160 0.95054 0.98866 1.20114 1.01231 0.91680 0.93267 1.20413 0.73878 0.86832 0.79837 1.90899 1.50098 1.67903 1.31073 1.84713 1.69986 1.29225 1.45710 1.68330 1.13719 1.08883 1.20115 0.93008 0.94757 0.92280 0.92429 0.92683 0.91845 0.89221 0.82483 0.82972 0.83001 0.72725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.66 37.16 0.32 -3.16 16 2 C 0.23 5.51 2.22 -69.08 -0.15 5.35 16 3 H 0.06 1.68 5.96 -51.93 -0.31 1.37 16 4 C -0.53 -14.71 8.95 -34.44 -0.31 -15.02 16 5 H 0.08 2.43 7.89 -52.49 -0.41 2.02 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 8 Si 0.88 21.75 24.37 -169.99 -4.14 17.61 16 9 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 12 N -0.56 -11.96 2.75 -176.24 -0.49 -12.45 16 13 C 0.09 1.60 8.51 59.85 0.51 2.11 16 14 C 0.55 11.27 7.66 -12.15 -0.09 11.18 16 15 O -0.55 -12.49 15.67 5.36 0.08 -12.41 16 16 C 0.09 1.47 6.63 -83.03 -0.55 0.92 16 17 C -0.08 -1.00 9.63 -38.95 -0.38 -1.38 16 18 C -0.09 -0.79 10.16 -39.34 -0.40 -1.19 16 19 C -0.09 -0.91 9.63 -38.94 -0.38 -1.28 16 20 C 0.07 0.93 6.75 -83.04 -0.56 0.37 16 21 C 0.55 6.46 8.32 34.79 0.29 6.75 16 22 O -0.51 -6.60 17.11 -19.21 -0.33 -6.93 16 23 O -0.49 -4.92 13.24 -40.42 -0.54 -5.46 16 24 N -0.40 -5.89 5.79 -6.39 -0.04 -5.92 16 25 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.20 6.67 -51.93 -0.35 0.85 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.15 6.44 -51.93 -0.33 0.82 16 31 H 0.09 1.47 5.27 -52.09 -0.27 1.19 16 32 H 0.16 1.78 7.66 -52.49 -0.40 1.38 16 33 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.15 1.19 7.64 -52.49 -0.40 0.78 16 35 H 0.41 2.04 9.11 45.56 0.42 2.46 16 LS Contribution 298.52 15.07 4.50 4.50 Total: -1.00 -34.65 298.52 -4.65 -39.30 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -2.69 Total: 1.31 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.79 Total: 6.72 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.25 Total: -44.64 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.78 Total: -24.80 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.14 Total: 17.61 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.65 -4.65 -39.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097798.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.858 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds