Wall clock time and date at job start Tue Mar 31 2020 01:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47616 * 2 1 4 4 C 1.50702 * 109.46947 * 120.00330 * 2 1 3 5 5 H 1.07995 * 120.00086 * 119.99909 * 4 2 1 6 6 C 1.37878 * 119.99611 * 299.99337 * 4 2 1 7 7 N 1.31514 * 120.00061 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00298 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47367 * 89.99460 * 8 6 4 10 10 H 1.48494 * 109.47209 * 209.99596 * 8 6 4 11 11 H 1.48506 * 109.46914 * 329.99777 * 8 6 4 12 12 N 1.46503 * 109.47186 * 240.00026 * 2 1 3 13 13 C 1.46503 * 119.99935 * 300.00151 * 12 2 1 14 14 C 1.34777 * 120.00174 * 120.00048 * 12 2 1 15 15 O 1.21501 * 120.00040 * 2.10006 * 14 12 2 16 16 C 1.48227 * 120.00076 * 182.09473 * 14 12 2 17 17 C 1.39642 * 119.65407 * 172.79913 * 16 14 12 18 18 C 1.38541 * 119.25371 * 179.97438 * 17 16 14 19 19 C 1.38581 * 118.55737 * 359.73783 * 18 17 16 20 20 C 1.39624 * 119.24030 * 0.50698 * 19 18 17 21 21 C 1.48124 * 119.65776 * 179.76797 * 20 19 18 22 22 O 1.21429 * 120.00181 * 359.72295 * 21 20 19 23 23 O 1.34673 * 120.00337 * 179.44638 * 21 20 19 24 24 N 1.32322 * 119.65190 * 352.77703 * 16 14 12 25 25 H 1.08994 * 109.47366 * 300.00348 * 1 2 3 26 26 H 1.09003 * 109.46874 * 60.00195 * 1 2 3 27 27 H 1.09000 * 109.47490 * 179.97438 * 1 2 3 28 28 H 0.96991 * 120.00586 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47515 * 263.77805 * 13 12 2 30 30 H 1.08995 * 109.47165 * 23.77645 * 13 12 2 31 31 H 1.08994 * 109.47142 * 143.77476 * 13 12 2 32 32 H 1.08001 * 120.37521 * 359.95069 * 17 16 14 33 33 H 1.08006 * 120.71730 * 180.02562 * 18 17 16 34 34 H 1.07996 * 120.38450 * 180.24842 * 19 18 17 35 35 H 0.96693 * 117.00095 * 180.27583 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1371 -0.8596 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8472 2.1766 1.4920 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0834 15 8 3.1183 1.1159 -1.8722 16 6 3.2489 -0.7202 -3.3166 17 6 3.9225 0.0059 -4.3011 18 6 4.3452 -0.6424 -5.4502 19 6 4.0873 -1.9978 -5.5791 20 6 3.4043 -2.6623 -4.5586 21 6 3.1192 -4.1099 -4.6891 22 8 3.4746 -4.7116 -5.6822 23 8 2.4708 -4.7601 -3.7040 24 7 3.0136 -2.0129 -3.4729 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9025 -0.5285 4.4375 29 1 2.4691 -2.7351 -1.0696 30 1 0.7452 -2.3294 -0.8920 31 1 1.5155 -2.2588 -2.4950 32 1 4.1114 1.0609 -4.1684 33 1 4.8686 -0.1039 -6.2265 34 1 4.4072 -2.5333 -6.4608 35 1 2.3111 -5.7050 -3.8326 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063097798.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:08 Heat of formation + Delta-G solvation = -81.322859 kcal Electronic energy + Delta-G solvation = -21580.157747 eV Core-core repulsion = 18157.753976 eV Total energy + Delta-G solvation = -3422.403771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.14232 -41.01800 -39.88160 -37.39649 -37.17926 -34.94970 -33.86818 -33.05624 -31.81432 -27.78587 -27.18835 -26.52628 -25.96524 -23.52636 -22.43740 -20.60329 -19.47013 -18.96426 -18.47748 -18.17314 -17.40088 -17.15616 -16.99138 -16.56398 -16.45635 -16.07005 -15.10984 -14.82974 -14.63165 -14.59333 -14.39251 -14.11592 -13.84938 -13.59838 -13.19182 -13.09733 -13.00044 -12.61072 -12.59636 -12.08422 -12.05266 -11.60345 -11.40107 -11.24813 -11.11963 -10.80387 -10.50037 -10.29067 -9.43689 -8.34877 -6.40643 -0.73228 -0.25231 1.18021 1.27737 1.36690 1.45989 1.78683 1.81059 2.07635 2.28325 2.69939 2.90039 2.99932 3.55392 3.72995 3.85727 4.00192 4.23967 4.39971 4.43555 4.46276 4.58513 4.68312 4.88833 4.92302 4.95220 5.00795 5.17507 5.31650 5.37804 5.42441 5.47673 5.68402 6.14606 6.33589 6.58788 6.64766 6.95082 7.10256 7.27457 8.81537 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025185 B = 0.005033 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.506013 B = 5561.812292 C = 6260.020105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.228 3.772 3 H 0.040 0.960 4 C -0.529 4.529 5 H 0.039 0.961 6 C 0.022 3.978 7 N -0.940 5.940 8 Si 0.945 3.055 9 H -0.252 1.252 10 H -0.294 1.294 11 H -0.257 1.257 12 N -0.573 5.573 13 C 0.098 3.902 14 C 0.548 3.452 15 O -0.581 6.581 16 C 0.064 3.936 17 C -0.080 4.080 18 C -0.063 4.063 19 C -0.074 4.074 20 C 0.059 3.941 21 C 0.553 3.447 22 O -0.524 6.524 23 O -0.493 6.493 24 N -0.416 5.416 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.269 0.731 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.162 0.838 33 H 0.203 0.797 34 H 0.181 0.819 35 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.357 -3.349 -21.487 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.125 3.875 3 H 0.057 0.943 4 C -0.567 4.567 5 H 0.057 0.943 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.771 3.229 9 H -0.178 1.178 10 H -0.221 1.221 11 H -0.182 1.182 12 N -0.301 5.301 13 C -0.044 4.044 14 C 0.335 3.665 15 O -0.462 6.462 16 C -0.077 4.077 17 C -0.100 4.100 18 C -0.088 4.088 19 C -0.094 4.094 20 C -0.079 4.079 21 C 0.396 3.604 22 O -0.414 6.414 23 O -0.306 6.306 24 N -0.132 5.132 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.180 0.820 33 H 0.220 0.780 34 H 0.198 0.802 35 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 0.203 -3.034 -20.694 20.916 hybrid contribution 0.033 0.113 0.437 0.453 sum 0.235 -2.920 -20.257 20.467 Atomic orbital electron populations 1.22320 0.96216 1.02365 1.00253 1.19124 0.92139 0.93634 0.82628 0.94252 1.21311 1.31993 1.13079 0.90331 0.94308 1.25693 0.97138 0.99735 0.95076 1.70008 1.47068 1.42225 0.98640 0.85920 0.79743 0.79849 0.77373 1.17768 1.22133 1.18177 1.47927 1.47473 1.13681 1.21007 1.22171 0.99658 0.79047 1.03534 1.18428 0.79071 0.85633 0.83381 1.90696 1.59071 1.18632 1.77833 1.21052 1.00782 0.90120 0.95730 1.22632 0.92228 1.02938 0.92229 1.22135 0.96343 0.93233 0.97113 1.22633 0.92815 0.95437 0.98527 1.20427 1.02041 0.92096 0.93377 1.20317 0.73661 0.86678 0.79749 1.90894 1.50852 1.68104 1.31533 1.84678 1.69454 1.31099 1.45323 1.67984 1.14917 1.08642 1.21641 0.93495 0.92214 0.91281 0.92173 0.94385 0.92036 0.86770 0.81992 0.78021 0.80164 0.70316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.49 8.66 71.98 0.62 -5.86 16 2 C 0.23 11.31 2.22 44.24 0.10 11.41 16 3 H 0.04 2.15 5.96 -2.39 -0.01 2.13 16 4 C -0.53 -30.76 8.95 25.60 0.23 -30.53 16 5 H 0.04 2.50 7.89 -2.91 -0.02 2.48 16 6 C 0.02 1.30 5.45 84.65 0.46 1.76 16 7 N -0.94 -58.64 13.96 21.45 0.30 -58.35 16 8 Si 0.94 45.14 24.37 68.60 1.67 46.82 16 9 H -0.25 -11.03 6.87 99.48 0.68 -10.34 16 10 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.26 -11.98 6.53 99.48 0.65 -11.33 16 12 N -0.57 -25.14 2.75 -829.79 -2.28 -27.42 16 13 C 0.10 3.67 8.51 127.77 1.09 4.76 16 14 C 0.55 22.74 7.66 86.90 0.67 23.41 16 15 O -0.58 -27.29 15.67 -3.72 -0.06 -27.34 16 16 C 0.06 1.98 6.63 42.07 0.28 2.26 16 17 C -0.08 -1.76 9.63 22.68 0.22 -1.54 16 18 C -0.06 -0.83 10.16 22.42 0.23 -0.61 16 19 C -0.07 -1.15 9.63 22.69 0.22 -0.94 16 20 C 0.06 1.34 6.75 42.02 0.28 1.63 16 21 C 0.55 11.98 8.32 70.45 0.59 12.57 16 22 O -0.52 -12.28 17.11 20.07 0.34 -11.94 16 23 O -0.49 -9.34 13.24 -55.82 -0.74 -10.08 16 24 N -0.42 -12.03 5.79 -174.13 -1.01 -13.04 16 25 H 0.05 2.01 3.27 -2.39 -0.01 2.00 16 26 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.07 2.74 6.67 -2.39 -0.02 2.72 16 28 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 2.27 6.44 -2.39 -0.02 2.25 16 31 H 0.11 3.72 5.27 -2.69 -0.01 3.70 16 32 H 0.16 3.39 7.66 -2.91 -0.02 3.36 16 33 H 0.20 0.73 8.06 -2.91 -0.02 0.70 16 34 H 0.18 1.87 7.64 -2.91 -0.02 1.85 16 35 H 0.43 3.64 9.11 -74.06 -0.67 2.97 16 Total: -1.00 -78.82 298.52 3.60 -75.21 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.40 Total: 7.82 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 4.98 Total: 18.32 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -2.99 Total: -98.81 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -0.45 Total: -49.36 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.67 Total: 46.82 kcal Total: -78.82 3.60 -75.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097798.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.109 kcal (2) G-P(sol) polarization free energy of solvation -78.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds