Wall clock time and date at job start Tue Mar 31 2020 01:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46710 * 2 1 4 4 C 1.50700 * 109.46968 * 239.99827 * 2 1 3 5 5 H 1.07996 * 119.99572 * 240.00024 * 4 2 1 6 6 C 1.37869 * 119.99940 * 60.00286 * 4 2 1 7 7 N 1.31513 * 120.00263 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99945 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46900 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47366 * 119.99674 * 8 6 4 11 11 H 1.48497 * 109.47205 * 240.00024 * 8 6 4 12 12 N 1.46496 * 109.46644 * 119.99600 * 2 1 3 13 13 C 1.46503 * 120.00026 * 60.00219 * 12 2 1 14 14 C 1.34773 * 120.00174 * 239.99738 * 12 2 1 15 15 O 1.21510 * 120.00127 * 2.09770 * 14 12 2 16 16 C 1.48236 * 120.00339 * 182.10203 * 14 12 2 17 17 C 1.39643 * 119.65386 * 172.79784 * 16 14 12 18 18 C 1.38541 * 119.25303 * 180.02562 * 17 16 14 19 19 C 1.38586 * 118.55118 * 359.74129 * 18 17 16 20 20 C 1.39622 * 119.24737 * 0.48029 * 19 18 17 21 21 C 1.48124 * 119.65845 * 179.79085 * 20 19 18 22 22 O 1.21417 * 120.00209 * 359.72342 * 21 20 19 23 23 O 1.34669 * 119.99758 * 179.45010 * 21 20 19 24 24 N 1.32326 * 119.64562 * 352.77223 * 16 14 12 25 25 H 1.08996 * 109.47422 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47056 * 300.00284 * 1 2 3 27 27 H 1.09001 * 109.46929 * 60.00335 * 1 2 3 28 28 H 0.97001 * 119.99896 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47240 * 263.77145 * 13 12 2 30 30 H 1.09004 * 109.47091 * 23.77701 * 13 12 2 31 31 H 1.09005 * 109.47055 * 143.77021 * 13 12 2 32 32 H 1.08003 * 120.37574 * 359.97385 * 17 16 14 33 33 H 1.07997 * 120.71999 * 180.02562 * 18 17 16 34 34 H 1.08003 * 120.37763 * 180.26724 * 19 18 17 35 35 H 0.96701 * 116.99942 * 180.26956 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1484 -2.2858 -3.6036 10 1 1.1679 -1.5867 -4.8164 11 1 3.1473 -0.1859 -4.8160 12 7 2.0183 -0.6905 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0554 1.1383 1.9107 16 6 3.3255 -0.7471 3.2698 17 6 4.2471 -0.1087 4.1023 18 6 4.7397 -0.7817 5.2086 19 6 4.2927 -2.0705 5.4531 20 6 3.3735 -2.6514 4.5774 21 6 2.8932 -4.0301 4.8275 22 8 3.3026 -4.6509 5.7872 23 8 1.9981 -4.5930 3.9934 24 7 2.9220 -1.9804 3.5290 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7089 1.1612 -3.4844 29 1 0.8008 -2.1451 2.0912 30 1 1.4218 -2.5686 0.4777 31 1 2.5071 -2.6093 1.8879 32 1 4.5729 0.8980 3.8858 33 1 5.4530 -0.3105 5.8685 34 1 4.6540 -2.6206 6.3094 35 1 1.7113 -5.4931 4.1998 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063097803.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:13 Heat of formation + Delta-G solvation = -65.204420 kcal Electronic energy + Delta-G solvation = -21526.932189 eV Core-core repulsion = 18105.227366 eV Total energy + Delta-G solvation = -3421.704823 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.05575 -39.85145 -38.39591 -36.30840 -35.44287 -33.33385 -32.48094 -31.73881 -29.23768 -26.11024 -25.55531 -25.22897 -24.54277 -22.29912 -20.99285 -19.07721 -18.52772 -17.40622 -16.89623 -16.41495 -16.20675 -15.99616 -15.43268 -15.26627 -14.78042 -14.35293 -13.87848 -13.49486 -13.45282 -13.05351 -12.46461 -12.24626 -12.21204 -11.74448 -11.64370 -11.56357 -11.08404 -11.02018 -10.82713 -10.70062 -10.26792 -10.18708 -10.16073 -9.76580 -9.42161 -9.13336 -8.91905 -8.42917 -7.56913 -6.07162 -4.14882 0.24512 0.77022 2.13751 2.64155 3.14604 3.26871 3.34740 3.38158 3.63549 3.94167 4.09877 4.39732 4.65260 4.70146 4.79175 4.85927 5.23635 5.27194 5.33805 5.72949 5.82300 6.18808 6.19098 6.27670 6.41710 6.74262 6.82478 6.90453 7.07188 7.28151 7.46002 7.52230 7.72022 7.74235 8.01249 8.18524 8.49070 8.78027 8.96869 9.51249 10.98284 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.004943 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.012350 B = 5662.924535 C = 6273.980258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.254 3.746 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.563 5.563 13 C 0.084 3.916 14 C 0.550 3.450 15 O -0.547 6.547 16 C 0.093 3.907 17 C -0.083 4.083 18 C -0.090 4.090 19 C -0.094 4.094 20 C 0.073 3.927 21 C 0.548 3.452 22 O -0.512 6.512 23 O -0.487 6.487 24 N -0.396 5.396 25 H 0.031 0.969 26 H 0.011 0.989 27 H 0.094 0.906 28 H 0.263 0.737 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 -7.608 14.951 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.154 3.846 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.291 5.291 13 C -0.059 4.059 14 C 0.334 3.666 15 O -0.426 6.426 16 C -0.048 4.048 17 C -0.103 4.103 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.065 4.065 21 C 0.391 3.609 22 O -0.400 6.400 23 O -0.297 6.297 24 N -0.112 5.112 25 H 0.051 0.949 26 H 0.030 0.970 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.175 0.825 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 3.876 -7.075 14.273 16.395 hybrid contribution 0.649 -0.805 -0.171 1.049 sum 4.526 -7.881 14.103 16.777 Atomic orbital electron populations 1.22073 0.97814 0.99640 1.00833 1.19084 0.91211 0.94546 0.79749 0.91775 1.21341 1.31818 1.13022 0.90115 0.92059 1.24884 0.94928 0.94984 0.98953 1.69891 1.36366 1.22635 1.23670 0.86423 0.78608 0.79586 0.82683 1.19797 1.20904 1.20925 1.48253 1.45985 1.12607 1.22233 1.22120 1.01050 0.81815 1.00931 1.17765 0.80535 0.86243 0.82072 1.90747 1.60685 1.15267 1.75870 1.21825 0.95978 0.90023 0.96995 1.22503 0.93540 1.01755 0.92547 1.21629 0.99140 0.93726 0.97055 1.22203 0.94609 0.95583 0.99079 1.20109 0.98772 0.93061 0.94529 1.20427 0.75752 0.85626 0.79110 1.90892 1.56621 1.63084 1.29432 1.84715 1.56092 1.35635 1.53248 1.68360 1.21736 1.06860 1.14195 0.94948 0.96957 0.88734 0.92723 0.93701 0.91250 0.89309 0.82489 0.83035 0.83090 0.72821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.97 37.16 0.33 -3.20 16 2 C 0.25 6.56 2.63 -69.08 -0.18 6.38 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.24 7.95 -34.44 -0.27 -14.52 16 5 H 0.06 1.65 7.44 -52.49 -0.39 1.26 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.56 -12.56 2.75 -176.23 -0.49 -13.04 16 13 C 0.08 1.59 8.24 59.85 0.49 2.09 16 14 C 0.55 11.71 7.66 -12.15 -0.09 11.61 16 15 O -0.55 -13.14 15.67 5.36 0.08 -13.05 16 16 C 0.09 1.55 6.63 -83.02 -0.55 1.00 16 17 C -0.08 -1.07 9.63 -38.95 -0.38 -1.44 16 18 C -0.09 -0.85 10.16 -39.34 -0.40 -1.25 16 19 C -0.09 -0.97 9.63 -38.94 -0.38 -1.35 16 20 C 0.07 0.94 6.75 -83.04 -0.56 0.38 16 21 C 0.55 6.60 8.32 34.79 0.29 6.89 16 22 O -0.51 -6.72 17.11 -19.20 -0.33 -7.05 16 23 O -0.49 -4.97 13.24 -40.41 -0.54 -5.51 16 24 N -0.40 -6.10 5.79 -6.39 -0.04 -6.13 16 25 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.37 7.12 -51.93 -0.37 1.00 16 31 H 0.09 1.57 5.27 -52.08 -0.27 1.30 16 32 H 0.16 1.92 7.66 -52.48 -0.40 1.52 16 33 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.15 1.24 7.64 -52.48 -0.40 0.84 16 35 H 0.41 2.04 9.11 45.56 0.42 2.46 16 LS Contribution 306.13 15.07 4.61 4.61 Total: -1.00 -33.04 306.13 -5.77 -38.80 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -2.90 Total: 1.47 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -1.79 Total: 8.27 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.11 Total: -43.57 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.78 Total: -25.61 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.04 -5.77 -38.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097803.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.403 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds