Wall clock time and date at job start Tue Mar 31 2020 01:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46710 * 2 1 4 4 C 1.50700 * 109.46968 * 239.99827 * 2 1 3 5 5 H 1.07996 * 119.99572 * 240.00024 * 4 2 1 6 6 C 1.37869 * 119.99940 * 60.00286 * 4 2 1 7 7 N 1.31513 * 120.00263 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99945 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46900 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47366 * 119.99674 * 8 6 4 11 11 H 1.48497 * 109.47205 * 240.00024 * 8 6 4 12 12 N 1.46496 * 109.46644 * 119.99600 * 2 1 3 13 13 C 1.46503 * 120.00026 * 60.00219 * 12 2 1 14 14 C 1.34773 * 120.00174 * 239.99738 * 12 2 1 15 15 O 1.21510 * 120.00127 * 2.09770 * 14 12 2 16 16 C 1.48236 * 120.00339 * 182.10203 * 14 12 2 17 17 C 1.39643 * 119.65386 * 172.79784 * 16 14 12 18 18 C 1.38541 * 119.25303 * 180.02562 * 17 16 14 19 19 C 1.38586 * 118.55118 * 359.74129 * 18 17 16 20 20 C 1.39622 * 119.24737 * 0.48029 * 19 18 17 21 21 C 1.48124 * 119.65845 * 179.79085 * 20 19 18 22 22 O 1.21417 * 120.00209 * 359.72342 * 21 20 19 23 23 O 1.34669 * 119.99758 * 179.45010 * 21 20 19 24 24 N 1.32326 * 119.64562 * 352.77223 * 16 14 12 25 25 H 1.08996 * 109.47422 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47056 * 300.00284 * 1 2 3 27 27 H 1.09001 * 109.46929 * 60.00335 * 1 2 3 28 28 H 0.97001 * 119.99896 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47240 * 263.77145 * 13 12 2 30 30 H 1.09004 * 109.47091 * 23.77701 * 13 12 2 31 31 H 1.09005 * 109.47055 * 143.77021 * 13 12 2 32 32 H 1.08003 * 120.37574 * 359.97385 * 17 16 14 33 33 H 1.07997 * 120.71999 * 180.02562 * 18 17 16 34 34 H 1.08003 * 120.37763 * 180.26724 * 19 18 17 35 35 H 0.96701 * 116.99942 * 180.26956 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1484 -2.2858 -3.6036 10 1 1.1679 -1.5867 -4.8164 11 1 3.1473 -0.1859 -4.8160 12 7 2.0183 -0.6905 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0554 1.1383 1.9107 16 6 3.3255 -0.7471 3.2698 17 6 4.2471 -0.1087 4.1023 18 6 4.7397 -0.7817 5.2086 19 6 4.2927 -2.0705 5.4531 20 6 3.3735 -2.6514 4.5774 21 6 2.8932 -4.0301 4.8275 22 8 3.3026 -4.6509 5.7872 23 8 1.9981 -4.5930 3.9934 24 7 2.9220 -1.9804 3.5290 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7089 1.1612 -3.4844 29 1 0.8008 -2.1451 2.0912 30 1 1.4218 -2.5686 0.4777 31 1 2.5071 -2.6093 1.8879 32 1 4.5729 0.8980 3.8858 33 1 5.4530 -0.3105 5.8685 34 1 4.6540 -2.6206 6.3094 35 1 1.7113 -5.4931 4.1998 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063097803.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:11 Heat of formation + Delta-G solvation = -88.247034 kcal Electronic energy + Delta-G solvation = -21527.931392 eV Core-core repulsion = 18105.227366 eV Total energy + Delta-G solvation = -3422.704026 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.11338 -40.97426 -39.81172 -37.26563 -37.16521 -34.97621 -33.78191 -32.91580 -31.09561 -27.67740 -27.32090 -26.51065 -25.85598 -23.45666 -22.41995 -20.63060 -19.44905 -18.61062 -18.39476 -18.14648 -17.23667 -17.10368 -16.96003 -16.48266 -16.24780 -16.18485 -14.98944 -14.77931 -14.54401 -14.37993 -14.29672 -13.87120 -13.51483 -13.21108 -13.02923 -12.93505 -12.72105 -12.68578 -12.58565 -12.22124 -12.11755 -12.05543 -11.32606 -11.18318 -11.07515 -10.55138 -10.48512 -10.24685 -9.35142 -8.15300 -6.31654 -0.72051 -0.23532 1.19458 1.41641 1.42842 1.54658 1.81404 1.84316 2.15957 2.43852 2.72703 2.93985 3.12776 3.59785 3.74970 3.86345 4.00980 4.26181 4.43561 4.64463 4.75561 4.85188 4.90096 4.92509 4.93551 5.06627 5.22057 5.40422 5.43343 5.45362 5.58092 5.66051 5.98373 6.14257 6.33184 6.73064 6.74559 6.96459 7.19727 7.41116 8.89680 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.004943 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.012350 B = 5662.924535 C = 6273.980258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.258 3.742 3 H 0.017 0.983 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.967 3.033 9 H -0.267 1.267 10 H -0.273 1.273 11 H -0.282 1.282 12 N -0.576 5.576 13 C 0.095 3.905 14 C 0.542 3.458 15 O -0.588 6.588 16 C 0.065 3.935 17 C -0.083 4.083 18 C -0.063 4.063 19 C -0.075 4.075 20 C 0.058 3.942 21 C 0.554 3.446 22 O -0.524 6.524 23 O -0.492 6.492 24 N -0.414 5.414 25 H 0.044 0.956 26 H 0.019 0.981 27 H 0.072 0.928 28 H 0.266 0.734 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.159 0.841 33 H 0.202 0.798 34 H 0.182 0.818 35 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 -9.430 16.739 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.156 3.844 3 H 0.035 0.965 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.792 3.208 9 H -0.192 1.192 10 H -0.199 1.199 11 H -0.208 1.208 12 N -0.304 5.304 13 C -0.048 4.048 14 C 0.329 3.671 15 O -0.470 6.470 16 C -0.075 4.075 17 C -0.104 4.104 18 C -0.088 4.088 19 C -0.095 4.095 20 C -0.080 4.080 21 C 0.397 3.603 22 O -0.414 6.414 23 O -0.304 6.304 24 N -0.129 5.129 25 H 0.063 0.937 26 H 0.038 0.962 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.176 0.824 33 H 0.219 0.781 34 H 0.199 0.801 35 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 5.152 -8.940 16.078 19.104 hybrid contribution 0.272 -0.267 -0.594 0.705 sum 5.424 -9.207 15.484 18.814 Atomic orbital electron populations 1.21865 0.96936 1.00065 1.00046 1.18706 0.91868 0.92484 0.81327 0.96517 1.21541 1.32070 1.13053 0.91039 0.92349 1.25715 0.94988 0.95628 1.01913 1.70020 1.37140 1.23797 1.24481 0.85379 0.78246 0.78442 0.78770 1.19172 1.19873 1.20840 1.48237 1.46745 1.13756 1.21661 1.22168 1.02123 0.79990 1.00484 1.18481 0.79501 0.86049 0.83059 1.90699 1.61896 1.17155 1.77223 1.21101 0.98687 0.91115 0.96634 1.22620 0.92743 1.01971 0.93030 1.22118 0.98259 0.92888 0.95577 1.22625 0.92528 0.95688 0.98684 1.20455 0.99600 0.93445 0.94503 1.20269 0.75738 0.85301 0.78964 1.90891 1.57250 1.63300 1.29940 1.84674 1.55486 1.37387 1.52893 1.68019 1.22544 1.06576 1.15800 0.93732 0.96201 0.90948 0.92505 0.92673 0.92454 0.87775 0.82381 0.78113 0.80115 0.70305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.97 71.98 0.65 -5.92 16 2 C 0.26 13.93 2.63 44.25 0.12 14.05 16 3 H 0.02 1.06 6.90 -2.39 -0.02 1.04 16 4 C -0.54 -30.08 7.95 25.60 0.20 -29.88 16 5 H 0.06 3.22 7.44 -2.91 -0.02 3.19 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.92 -53.02 11.32 21.44 0.24 -52.77 16 8 Si 0.97 43.52 29.54 68.60 2.03 45.54 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.58 -26.60 2.75 -829.76 -2.28 -28.88 16 13 C 0.09 3.60 8.24 127.77 1.05 4.66 16 14 C 0.54 23.95 7.66 86.90 0.67 24.62 16 15 O -0.59 -29.81 15.67 -3.75 -0.06 -29.87 16 16 C 0.07 2.14 6.63 42.07 0.28 2.41 16 17 C -0.08 -1.99 9.63 22.68 0.22 -1.77 16 18 C -0.06 -0.92 10.16 22.43 0.23 -0.69 16 19 C -0.08 -1.23 9.63 22.69 0.22 -1.01 16 20 C 0.06 1.36 6.75 42.02 0.28 1.64 16 21 C 0.55 11.96 8.32 70.45 0.59 12.54 16 22 O -0.52 -12.24 17.11 20.10 0.34 -11.90 16 23 O -0.49 -9.01 13.24 -55.79 -0.74 -9.75 16 24 N -0.41 -12.25 5.79 -174.12 -1.01 -13.26 16 25 H 0.04 2.07 7.67 -2.39 -0.02 2.05 16 26 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 3.96 6.07 -2.39 -0.01 3.95 16 28 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 2.28 7.12 -2.38 -0.02 2.26 16 31 H 0.10 3.66 5.27 -2.69 -0.01 3.65 16 32 H 0.16 3.72 7.66 -2.91 -0.02 3.70 16 33 H 0.20 1.00 8.06 -2.91 -0.02 0.97 16 34 H 0.18 1.98 7.64 -2.91 -0.02 1.95 16 35 H 0.43 3.30 9.11 -74.06 -0.67 2.63 16 Total: -1.00 -74.85 306.13 3.94 -70.91 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.47 Total: 7.93 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: 4.95 Total: 22.04 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -3.05 Total: -94.92 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -0.45 Total: -51.51 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -74.85 3.94 -70.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097803.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.332 kcal (2) G-P(sol) polarization free energy of solvation -74.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds