Wall clock time and date at job start Tue Mar 31 2020 00:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35005 * 120.00588 * 2 1 4 4 C 1.46140 * 120.00278 * 179.97438 * 3 2 1 5 5 O 1.21633 * 120.00261 * 359.73110 * 4 3 2 6 6 O 1.34924 * 119.99900 * 180.02562 * 4 3 2 7 7 C 1.42891 * 116.99955 * 179.72935 * 6 4 3 8 8 C 1.53001 * 109.47338 * 180.02562 * 7 6 4 9 9 C 1.50696 * 109.47421 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99985 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99926 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00058 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99844 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47186 * 59.99658 * 13 11 9 15 15 H 1.48501 * 109.46995 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47209 * 299.99759 * 13 11 9 17 17 C 1.47075 * 119.99802 * 179.97438 * 2 1 3 18 18 C 1.39914 * 120.14379 * 114.72500 * 17 2 1 19 19 C 1.37780 * 119.85098 * 179.79125 * 18 17 2 20 20 C 1.38698 * 120.14495 * 0.46236 * 19 18 17 21 21 F 1.35100 * 119.85178 * 179.76478 * 20 19 18 22 22 C 1.38686 * 120.29210 * 359.79004 * 20 19 18 23 23 C 1.37783 * 120.15223 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.47157 * 89.99232 * 1 2 3 25 25 H 1.08993 * 109.47617 * 210.00282 * 1 2 3 26 26 H 1.09008 * 109.47122 * 330.00334 * 1 2 3 27 27 H 1.07998 * 119.99349 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.47220 * 300.00034 * 7 6 4 29 29 H 1.08996 * 109.47672 * 59.99978 * 7 6 4 30 30 H 1.09002 * 109.46746 * 300.00021 * 8 7 6 31 31 H 1.08996 * 109.47004 * 59.99266 * 8 7 6 32 32 H 0.97002 * 119.99939 * 180.02562 * 12 11 9 33 33 H 1.07999 * 120.07874 * 0.02562 * 18 17 2 34 34 H 1.08001 * 119.92841 * 180.21430 * 19 18 17 35 35 H 1.08007 * 119.92883 * 179.97438 * 22 20 19 36 36 H 1.07999 * 120.07786 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1821 1.1691 0.0000 4 6 3.6435 1.1690 0.0006 5 8 4.2516 0.1157 0.0060 6 8 4.3181 2.3375 0.0011 7 6 5.7451 2.2626 0.0076 8 6 6.3300 3.6764 0.0079 9 6 7.8349 3.5975 0.0142 10 1 8.3252 2.6352 0.0180 11 6 8.5858 4.7539 0.0160 12 7 7.9888 5.9257 0.0118 13 14 10.4513 4.6561 0.0245 14 1 10.9144 3.9294 -1.1849 15 1 11.0189 6.0283 0.0246 16 1 10.9035 3.9327 1.2400 17 6 2.2423 -1.2737 0.0006 18 6 3.0318 -1.6297 -1.0983 19 6 3.7215 -2.8224 -1.0895 20 6 3.6268 -3.6738 0.0013 21 9 4.3019 -4.8440 0.0016 22 6 2.8418 -3.3294 1.0914 23 6 2.1507 -2.1374 1.0976 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8901 0.5138 27 1 1.6421 2.1044 -0.0004 28 1 6.0770 1.7324 0.9003 29 1 6.0851 1.7286 -0.8796 30 1 5.9981 4.2071 -0.8845 31 1 5.9900 4.2101 0.8953 32 1 8.5172 6.7392 0.0127 33 1 3.1035 -0.9693 -1.9499 34 1 4.3341 -3.0968 -1.9356 35 1 2.7719 -3.9970 1.9376 36 1 1.5394 -1.8705 1.9470 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064323064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:51 Heat of formation + Delta-G solvation = -100.107001 kcal Electronic energy + Delta-G solvation = -20487.332455 eV Core-core repulsion = 17044.194181 eV Total energy + Delta-G solvation = -3443.138274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.91835 -40.25247 -38.92188 -36.35378 -34.89908 -33.31591 -31.23423 -30.42810 -29.60028 -28.41547 -25.09162 -23.39349 -23.01828 -21.81569 -20.73134 -19.07085 -17.81323 -17.52389 -16.40440 -16.34562 -15.99174 -15.83855 -15.60030 -14.74644 -14.50790 -14.14368 -13.86254 -13.77139 -13.61350 -13.14725 -13.07230 -12.98461 -12.45426 -12.33074 -12.10468 -11.59251 -11.22809 -11.14699 -11.03342 -10.71955 -10.67928 -10.25808 -9.65008 -9.58953 -9.43568 -9.30384 -9.05616 -8.42889 -8.30166 -6.09244 -4.13445 0.67763 1.23408 1.36129 3.18998 3.28507 3.30840 3.34816 3.40394 3.53014 4.21830 4.33921 4.40091 4.66443 4.76587 4.89858 5.11876 5.14782 5.23047 5.27213 5.32927 5.39627 5.60949 5.73117 5.81633 6.00536 6.06272 6.10392 6.12262 6.17087 6.24574 6.37420 6.67434 6.83178 7.03704 7.57294 7.63948 7.88217 8.22436 8.32184 8.91900 9.50812 11.02278 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.003681 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.625087 B = 7605.211667 C = 8733.519054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.002 4.002 3 C -0.177 4.177 4 C 0.479 3.521 5 O -0.505 6.505 6 O -0.348 6.348 7 C 0.074 3.926 8 C 0.026 3.974 9 C -0.527 4.527 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.891 5.891 13 Si 0.899 3.101 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.275 1.275 17 C -0.063 4.063 18 C -0.024 4.024 19 C -0.154 4.154 20 C 0.100 3.900 21 F -0.144 7.144 22 C -0.160 4.160 23 C -0.076 4.076 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.145 0.855 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.264 0.736 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.161 -15.158 -0.339 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.003 4.003 3 C -0.196 4.196 4 C 0.325 3.675 5 O -0.397 6.397 6 O -0.264 6.264 7 C 0.001 3.999 8 C -0.011 4.011 9 C -0.565 4.565 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.529 5.529 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.064 4.064 18 C -0.043 4.043 19 C -0.173 4.173 20 C 0.081 3.919 21 F -0.122 7.122 22 C -0.178 4.178 23 C -0.095 4.095 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.163 0.837 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.867 -15.278 -0.335 22.761 hybrid contribution 1.481 -0.105 0.055 1.486 sum -15.386 -15.383 -0.279 21.759 Atomic orbital electron populations 1.20956 0.89484 1.03728 1.03405 1.21130 0.95770 0.91345 0.92025 1.22288 0.90874 0.98964 1.07458 1.21313 0.89701 0.82603 0.73905 1.90914 1.70876 1.32106 1.45771 1.86220 1.24536 1.32984 1.82662 1.23195 0.73152 1.02865 1.00672 1.19158 0.94963 0.88245 0.98780 1.20956 0.90439 0.92887 1.52185 0.92361 1.24978 0.99029 0.95226 0.94875 1.69964 1.35789 0.97365 1.49798 0.86539 0.84872 0.77140 0.78792 1.20075 1.21106 1.20071 1.18781 0.98532 0.93725 0.95334 1.20871 0.92103 0.94027 0.97265 1.20942 1.02529 0.95267 0.98571 1.17832 0.95063 0.82848 0.96144 1.91479 1.78340 1.45588 1.96840 1.20898 0.99860 0.98858 0.98228 1.20911 0.98695 0.92498 0.97350 0.89819 0.90652 0.90343 0.83714 0.92699 0.92692 0.95424 0.95422 0.92672 0.85641 0.84900 0.84944 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.03 36.00 0.36 -0.40 16 2 C 0.00 -0.02 5.48 -102.19 -0.56 -0.58 16 3 C -0.18 -2.21 9.80 -37.56 -0.37 -2.57 16 4 C 0.48 8.30 7.75 33.90 0.26 8.56 16 5 O -0.51 -9.56 12.00 -19.37 -0.23 -9.80 16 6 O -0.35 -7.06 10.12 -41.11 -0.42 -7.48 16 7 C 0.07 1.69 5.31 37.16 0.20 1.89 16 8 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 9 C -0.53 -15.02 9.11 -34.44 -0.31 -15.33 16 10 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 13 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.06 -0.76 3.82 -105.06 -0.40 -1.16 16 18 C -0.02 -0.31 6.99 -39.12 -0.27 -0.59 16 19 C -0.15 -1.97 10.01 -39.58 -0.40 -2.37 16 20 C 0.10 1.30 7.31 -39.25 -0.29 1.01 16 21 F -0.14 -1.91 17.26 2.25 0.04 -1.88 16 22 C -0.16 -1.82 10.01 -39.58 -0.40 -2.22 16 23 C -0.08 -0.84 9.69 -39.12 -0.38 -1.22 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.41 8.02 -51.93 -0.42 -0.01 16 26 H 0.08 0.41 8.08 -51.92 -0.42 -0.01 16 27 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.05 1.25 8.13 -51.93 -0.42 0.83 16 29 H 0.05 1.24 8.13 -51.93 -0.42 0.81 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 35 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -32.15 322.75 -7.43 -39.58 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -4.60 Total: -3.23 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.80 Total: -12.81 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.85 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.65 Total: -17.27 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.15 -7.43 -39.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064323064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.527 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds