Wall clock time and date at job start Tue Mar 31 2020 01:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.50704 * 109.47086 * 119.99754 * 2 1 3 5 5 H 1.07992 * 120.00120 * 116.68964 * 4 2 1 6 6 C 1.37875 * 119.99522 * 296.68843 * 4 2 1 7 7 N 1.31513 * 120.00501 * 352.38401 * 6 4 2 8 8 Si 1.86806 * 119.99715 * 172.66612 * 6 4 2 9 9 H 1.48497 * 109.47165 * 264.79730 * 8 6 4 10 10 H 1.48503 * 109.46939 * 24.79275 * 8 6 4 11 11 H 1.48498 * 109.47436 * 144.79640 * 8 6 4 12 12 N 1.46497 * 109.47488 * 239.99998 * 2 1 3 13 13 C 1.34780 * 120.00312 * 84.99823 * 12 2 1 14 14 O 1.21279 * 119.99812 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99852 * 180.02562 * 13 12 2 16 16 C 1.50699 * 109.46705 * 180.02562 * 15 13 12 17 17 C 1.38242 * 119.99770 * 269.72470 * 16 15 13 18 18 C 1.38236 * 119.99810 * 179.76624 * 17 16 15 19 19 C 1.38235 * 120.00062 * 0.49052 * 18 17 16 20 20 N 1.48014 * 120.00019 * 179.76841 * 19 18 17 21 21 O 1.21804 * 120.00041 * 180.02562 * 20 19 18 22 22 O 1.21799 * 120.00465 * 0.02562 * 20 19 18 23 23 C 1.38238 * 119.99934 * 359.78480 * 19 18 17 24 24 C 1.38234 * 120.00173 * 89.99935 * 16 15 13 25 25 H 1.09001 * 109.47019 * 57.81936 * 1 2 3 26 26 H 1.09001 * 109.47267 * 177.81203 * 1 2 3 27 27 H 1.08995 * 109.47232 * 297.82001 * 1 2 3 28 28 H 0.96997 * 120.00137 * 180.27656 * 7 6 4 29 29 H 0.97006 * 119.99727 * 264.99964 * 12 2 1 30 30 H 1.09000 * 109.46993 * 299.99949 * 15 13 12 31 31 H 1.09000 * 109.46898 * 60.00268 * 15 13 12 32 32 H 1.07998 * 119.99872 * 0.02562 * 17 16 15 33 33 H 1.08001 * 120.00179 * 180.25561 * 18 17 16 34 34 H 1.08000 * 120.00102 * 179.97438 * 23 19 18 35 35 H 1.07996 * 119.99757 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6083 -1.6185 1.1324 6 6 1.7564 -0.2007 2.4815 7 7 1.1871 0.9789 2.6002 8 14 2.1985 -1.1822 4.0082 9 1 1.0150 -1.9586 4.4575 10 1 3.3110 -2.1140 3.6927 11 1 2.6209 -0.2546 5.0881 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5877 16 6 2.7004 0.2396 -4.7411 17 6 1.6013 0.3913 -5.5657 18 6 1.6468 1.2832 -6.6209 19 6 2.7948 2.0160 -6.8575 20 7 2.8452 2.9673 -7.9904 21 8 3.8569 3.6126 -8.1992 22 8 1.8751 3.1048 -8.7139 23 6 3.8958 1.8601 -6.0363 24 6 3.8486 0.9721 -4.9780 25 1 -0.3633 0.5473 -0.8698 26 1 -0.3634 -1.0269 -0.0392 27 1 -0.3633 0.4796 0.9088 28 1 0.9967 1.3391 3.4805 29 1 2.2491 -1.6318 -1.1525 30 1 3.6482 -1.1214 -3.3984 31 1 1.9761 -1.5507 -3.8325 32 1 0.7057 -0.1840 -5.3831 33 1 0.7867 1.4048 -7.2627 34 1 4.7929 2.4323 -6.2214 35 1 4.7086 0.8506 -4.3361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064333167.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:19 Heat of formation + Delta-G solvation = -45.776324 kcal Electronic energy + Delta-G solvation = -20509.188130 eV Core-core repulsion = 17088.325773 eV Total energy + Delta-G solvation = -3420.862357 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.28050 -41.10557 -39.89272 -37.71543 -36.71607 -34.47843 -34.21992 -32.39051 -31.35103 -29.60090 -27.31424 -26.53516 -24.18973 -23.58294 -22.44512 -21.11838 -20.40338 -19.80135 -18.95656 -18.64852 -17.50980 -17.32465 -16.81300 -16.65033 -15.90821 -15.72051 -15.50969 -14.85204 -14.79726 -14.36095 -14.01571 -13.76689 -13.22444 -13.20842 -12.87785 -12.84624 -12.78383 -12.66180 -12.35700 -12.34258 -12.29145 -12.28997 -12.12747 -11.13146 -10.89838 -10.58013 -10.34852 -10.29587 -9.74331 -8.20173 -6.34461 -1.25560 0.01834 0.26808 0.36626 1.45101 1.46085 1.56329 1.83770 2.17167 2.39497 2.78499 3.12706 3.39844 3.42316 3.53859 3.86843 3.98805 4.11779 4.30512 4.43939 4.60636 4.70882 4.74032 4.78472 4.82138 4.90038 5.06540 5.15235 5.23566 5.43711 5.50901 5.61823 5.65892 5.90410 6.05623 6.46770 6.75490 6.98208 7.33540 7.59369 8.88370 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.041508 B = 0.003061 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.399110 B = 9144.011442 C = 9158.276660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.269 3.731 3 H -0.001 1.001 4 C -0.546 4.546 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.968 3.032 9 H -0.274 1.274 10 H -0.259 1.259 11 H -0.291 1.291 12 N -0.703 5.703 13 C 0.499 3.501 14 O -0.600 6.600 15 C -0.101 4.101 16 C -0.008 4.008 17 C -0.106 4.106 18 C -0.056 4.056 19 C -0.070 4.070 20 N 0.033 4.967 21 O -0.184 6.184 22 O -0.181 6.181 23 C -0.057 4.057 24 C -0.108 4.108 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.264 0.736 29 H 0.409 0.591 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.026 -7.914 -15.070 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.166 3.834 3 H 0.017 0.983 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.793 3.207 9 H -0.200 1.200 10 H -0.183 1.183 11 H -0.217 1.217 12 N -0.352 5.352 13 C 0.287 3.713 14 O -0.482 6.482 15 C -0.140 4.140 16 C -0.009 4.009 17 C -0.125 4.125 18 C -0.075 4.075 19 C -0.153 4.153 20 N 0.547 4.453 21 O -0.397 6.397 22 O -0.394 6.394 23 C -0.076 4.076 24 C -0.126 4.126 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.245 0.755 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.187 0.813 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.743 -7.408 -14.430 16.647 hybrid contribution 0.060 0.200 0.712 0.742 sum 3.803 -7.208 -13.718 15.957 Atomic orbital electron populations 1.21843 0.98518 0.99477 0.99079 1.18294 0.90829 0.92134 0.82177 0.98313 1.21574 1.35272 1.10754 0.90764 0.90451 1.25799 0.94905 0.95468 1.02431 1.70117 1.43409 1.17629 1.24689 0.85395 0.78798 0.78308 0.78220 1.19956 1.18279 1.21697 1.46234 1.65061 1.14433 1.09519 1.21136 0.77692 0.87039 0.85461 1.90703 1.53000 1.18543 1.85930 1.20913 1.07426 0.97734 0.87934 1.20120 0.93230 0.94079 0.93499 1.21397 0.99637 0.98261 0.93157 1.21229 0.96161 0.92506 0.97650 1.21335 1.00724 1.00037 0.93247 1.43927 0.99629 1.00189 1.01555 1.94507 1.22103 1.45664 1.77390 1.94500 1.27456 1.71932 1.45558 1.21212 0.97365 0.96716 0.92322 1.21387 0.99948 0.94872 0.96432 0.96532 0.93270 0.93246 0.92687 0.75535 0.83994 0.83648 0.81325 0.81856 0.82010 0.81629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 9.32 71.98 0.67 -5.44 16 2 C 0.27 12.92 2.45 44.25 0.11 13.03 16 3 H 0.00 -0.06 7.57 -2.39 -0.02 -0.08 16 4 C -0.55 -27.06 8.69 25.60 0.22 -26.83 16 5 H 0.08 3.51 7.73 -2.91 -0.02 3.49 16 6 C 0.01 0.73 5.21 84.65 0.44 1.17 16 7 N -0.92 -51.86 11.92 21.45 0.26 -51.61 16 8 Si 0.97 40.24 29.54 68.60 2.03 42.27 16 9 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 10 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.70 -24.57 5.07 -446.09 -2.26 -26.83 16 13 C 0.50 15.98 7.79 87.66 0.68 16.66 16 14 O -0.60 -25.87 15.70 -3.03 -0.05 -25.92 16 15 C -0.10 -1.72 5.83 29.10 0.17 -1.55 16 16 C -0.01 -0.16 4.37 -19.86 -0.09 -0.25 16 17 C -0.11 -1.96 9.70 22.27 0.22 -1.74 16 18 C -0.06 -1.16 9.56 22.27 0.21 -0.95 16 19 C -0.07 -1.69 6.85 36.38 0.25 -1.44 16 20 N 0.03 0.93 4.45 -46.47 -0.21 0.72 16 21 O -0.18 -5.43 18.45 18.88 0.35 -5.08 16 22 O -0.18 -5.29 18.45 18.89 0.35 -4.94 16 23 C -0.06 -1.20 9.56 22.27 0.21 -0.99 16 24 C -0.11 -2.06 9.70 22.27 0.22 -1.85 16 25 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.05 2.59 6.60 -2.39 -0.02 2.57 16 28 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.41 11.12 8.53 -92.70 -0.79 10.33 16 30 H 0.14 1.54 8.08 -2.39 -0.02 1.52 16 31 H 0.15 1.46 8.08 -2.39 -0.02 1.44 16 32 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.16 2.85 7.61 -2.91 -0.02 2.83 16 34 H 0.16 2.95 7.61 -2.91 -0.02 2.93 16 35 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -71.22 316.46 4.11 -67.11 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.33 Total: 14.47 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 3.31 Total: -10.19 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -2.21 Total: -77.72 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: 0.65 Total: -35.94 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -71.22 4.11 -67.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333167.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.330 kcal (2) G-P(sol) polarization free energy of solvation -71.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds