Wall clock time and date at job start Tue Mar 31 2020 01:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47234 * 2 1 4 4 C 1.50702 * 109.47176 * 239.99467 * 2 1 3 5 5 H 1.08003 * 119.99979 * 239.99547 * 4 2 1 6 6 C 1.37878 * 119.99763 * 60.00397 * 4 2 1 7 7 N 1.31509 * 120.00228 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99726 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47168 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47138 * 120.00249 * 8 6 4 11 11 H 1.48499 * 109.46908 * 240.00029 * 8 6 4 12 12 N 1.46505 * 109.46825 * 119.99858 * 2 1 3 13 13 C 1.34784 * 119.99641 * 275.00015 * 12 2 1 14 14 O 1.21273 * 119.99859 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99598 * 180.02562 * 13 12 2 16 16 C 1.50694 * 109.46703 * 179.97438 * 15 13 12 17 17 C 1.38254 * 120.00048 * 100.28298 * 16 15 13 18 18 C 1.38213 * 120.00317 * 179.78466 * 17 16 15 19 19 C 1.38256 * 119.99800 * 0.46532 * 18 17 16 20 20 C 1.38213 * 120.00097 * 359.76621 * 19 18 17 21 21 C 1.38216 * 120.00245 * 280.55376 * 16 15 13 22 22 N 1.48019 * 119.99963 * 359.97438 * 21 16 15 23 23 O 1.21800 * 119.99719 * 185.91919 * 22 21 16 24 24 O 1.21797 * 119.99962 * 5.91439 * 22 21 16 25 25 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46801 * 60.00260 * 1 2 3 27 27 H 1.08999 * 109.47642 * 300.00368 * 1 2 3 28 28 H 0.96996 * 120.00381 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00349 * 95.00055 * 12 2 1 30 30 H 1.08991 * 109.47280 * 300.00128 * 15 13 12 31 31 H 1.09001 * 109.46609 * 60.00086 * 15 13 12 32 32 H 1.08009 * 120.00120 * 0.02562 * 17 16 15 33 33 H 1.08007 * 119.99962 * 180.25500 * 18 17 16 34 34 H 1.07998 * 120.00075 * 179.78848 * 19 18 17 35 35 H 1.07995 * 120.00088 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6035 8 14 2.3226 -1.1198 -4.0078 9 1 3.1485 -2.2859 -3.6035 10 1 1.1679 -1.5868 -4.8164 11 1 3.1474 -0.1861 -4.8159 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0181 2.3572 14 8 1.8589 1.1587 2.4114 15 6 2.6497 -0.7284 3.5876 16 6 2.7009 0.2401 4.7410 17 6 1.6910 0.2445 5.6852 18 6 1.7401 1.1298 6.7455 19 6 2.7942 2.0175 6.8566 20 6 3.8013 2.0164 5.9101 21 6 3.7544 1.1278 4.8518 22 7 4.8328 1.1269 3.8380 23 8 5.8139 1.8321 3.9918 24 8 4.7392 0.4208 2.8500 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 0.7083 1.1606 -3.4844 29 1 2.2490 -1.6318 1.1528 30 1 1.9776 -1.5507 3.8327 31 1 3.6491 -1.1202 3.3980 32 1 0.8656 -0.4465 5.5965 33 1 0.9532 1.1304 7.4854 34 1 2.8308 2.7115 7.6832 35 1 4.6249 2.7095 5.9971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333174.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:22 Heat of formation + Delta-G solvation = -15.295945 kcal Electronic energy + Delta-G solvation = -21581.659993 eV Core-core repulsion = 18162.119364 eV Total energy + Delta-G solvation = -3419.540629 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.07154 -39.76599 -38.52730 -36.38805 -34.79184 -33.08749 -32.30254 -31.95295 -29.39950 -27.67314 -26.02995 -25.20200 -22.85029 -22.38995 -20.98557 -19.44471 -18.93493 -18.37217 -17.47437 -17.01774 -16.38751 -15.83486 -15.65213 -15.18140 -14.84452 -14.22887 -14.15733 -13.51801 -13.30857 -12.72910 -12.42278 -12.40848 -12.22665 -11.67393 -11.60104 -11.22308 -11.03813 -10.91747 -10.87311 -10.72584 -10.49906 -10.26282 -10.19374 -9.68178 -9.46788 -9.00261 -8.93062 -8.50119 -7.86309 -6.06911 -4.15332 -0.05889 0.81460 1.42924 1.61665 3.15535 3.28605 3.36318 3.39244 3.43377 4.06776 4.27405 4.30349 4.44619 4.53871 4.77762 4.80134 5.01760 5.25660 5.29893 5.39196 5.52023 5.61923 5.74505 5.88382 5.94105 6.18901 6.63217 6.84572 6.97400 7.18191 7.50528 7.60240 7.74540 7.86746 7.96683 8.19468 8.70839 8.83600 9.16273 9.51881 10.99396 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027539 B = 0.004564 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.504846 B = 6133.067000 C = 6676.545099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.529 4.529 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.702 5.702 13 C 0.523 3.477 14 O -0.560 6.560 15 C -0.127 4.127 16 C 0.015 3.985 17 C -0.114 4.114 18 C -0.068 4.068 19 C -0.126 4.126 20 C -0.056 4.056 21 C -0.029 4.029 22 N 0.033 4.967 23 O -0.176 6.176 24 O -0.142 6.142 25 H 0.026 0.974 26 H 0.090 0.910 27 H 0.012 0.988 28 H 0.263 0.737 29 H 0.390 0.610 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.653 -2.812 19.726 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.348 5.348 13 C 0.307 3.693 14 O -0.440 6.440 15 C -0.167 4.167 16 C 0.013 3.987 17 C -0.132 4.132 18 C -0.087 4.087 19 C -0.145 4.145 20 C -0.075 4.075 21 C -0.112 4.112 22 N 0.551 4.449 23 O -0.387 6.387 24 O -0.360 6.360 25 H 0.045 0.955 26 H 0.109 0.891 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.222 0.778 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.864 -1.825 20.064 20.165 hybrid contribution 0.650 -0.821 -1.178 1.576 sum 1.515 -2.646 18.886 19.130 Atomic orbital electron populations 1.22079 0.98581 0.99013 1.00804 1.18739 0.90803 0.94075 0.79995 0.93433 1.21266 1.32120 1.13169 0.90237 0.91876 1.24888 0.94844 0.94960 0.99079 1.69911 1.36138 1.22593 1.23692 0.86387 0.78544 0.79580 0.82555 1.19651 1.20986 1.20881 1.46392 1.64731 1.13571 1.10155 1.19723 0.78119 0.87244 0.84222 1.90657 1.52102 1.16005 1.85203 1.21180 1.05953 0.97641 0.91970 1.19373 0.90908 0.93422 0.95029 1.21133 0.97713 1.00551 0.93840 1.21546 0.97335 0.92937 0.96837 1.21144 0.93813 1.00119 0.99391 1.21018 0.99588 0.95765 0.91158 1.20925 0.92233 1.04550 0.93474 1.43514 1.01253 0.99008 1.01170 1.94491 1.21705 1.39220 1.83304 1.94559 1.85027 1.37868 1.18584 0.95481 0.89150 0.96855 0.92709 0.77807 0.87913 0.85968 0.83718 0.84139 0.83840 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 2 C 0.27 6.93 2.56 -69.08 -0.18 6.76 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.35 8.73 -34.44 -0.30 -14.66 16 5 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.06 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.70 -14.91 5.07 -54.93 -0.28 -15.19 16 13 C 0.52 10.59 6.19 -10.98 -0.07 10.52 16 14 O -0.56 -13.69 15.59 5.56 0.09 -13.61 16 15 C -0.13 -1.85 5.13 -29.04 -0.15 -1.99 16 16 C 0.01 0.20 4.44 -104.63 -0.46 -0.26 16 17 C -0.11 -1.19 9.67 -39.58 -0.38 -1.58 16 18 C -0.07 -0.57 10.05 -39.58 -0.40 -0.96 16 19 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 20 C -0.06 -0.65 9.56 -39.58 -0.38 -1.03 16 21 C -0.03 -0.43 6.68 -79.95 -0.53 -0.96 16 22 N 0.03 0.59 4.45 33.96 0.15 0.74 16 23 O -0.18 -3.15 18.46 -29.46 -0.54 -3.69 16 24 O -0.14 -2.81 14.21 -29.48 -0.42 -3.23 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.39 7.07 8.54 -40.82 -0.35 6.72 16 30 H 0.10 1.10 8.00 -51.93 -0.42 0.68 16 31 H 0.12 1.72 6.12 -51.93 -0.32 1.40 16 32 H 0.15 1.17 8.04 -52.48 -0.42 0.75 16 33 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.15 1.52 7.62 -52.49 -0.40 1.12 16 LS Contribution 307.99 15.07 4.64 4.64 Total: -1.00 -34.42 307.99 -7.60 -42.02 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.84 Total: 4.42 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -3.00 Total: -7.30 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.50 Total: -39.31 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.88 Total: -20.53 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.42 -7.60 -42.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333174.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.724 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds