Wall clock time and date at job start Tue Mar 31 2020 01:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47234 * 2 1 4 4 C 1.50702 * 109.47176 * 239.99467 * 2 1 3 5 5 H 1.08003 * 119.99979 * 239.99547 * 4 2 1 6 6 C 1.37878 * 119.99763 * 60.00397 * 4 2 1 7 7 N 1.31509 * 120.00228 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99726 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47168 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47138 * 120.00249 * 8 6 4 11 11 H 1.48499 * 109.46908 * 240.00029 * 8 6 4 12 12 N 1.46505 * 109.46825 * 119.99858 * 2 1 3 13 13 C 1.34784 * 119.99641 * 275.00015 * 12 2 1 14 14 O 1.21273 * 119.99859 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99598 * 180.02562 * 13 12 2 16 16 C 1.50694 * 109.46703 * 179.97438 * 15 13 12 17 17 C 1.38254 * 120.00048 * 100.28298 * 16 15 13 18 18 C 1.38213 * 120.00317 * 179.78466 * 17 16 15 19 19 C 1.38256 * 119.99800 * 0.46532 * 18 17 16 20 20 C 1.38213 * 120.00097 * 359.76621 * 19 18 17 21 21 C 1.38216 * 120.00245 * 280.55376 * 16 15 13 22 22 N 1.48019 * 119.99963 * 359.97438 * 21 16 15 23 23 O 1.21800 * 119.99719 * 185.91919 * 22 21 16 24 24 O 1.21797 * 119.99962 * 5.91439 * 22 21 16 25 25 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46801 * 60.00260 * 1 2 3 27 27 H 1.08999 * 109.47642 * 300.00368 * 1 2 3 28 28 H 0.96996 * 120.00381 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00349 * 95.00055 * 12 2 1 30 30 H 1.08991 * 109.47280 * 300.00128 * 15 13 12 31 31 H 1.09001 * 109.46609 * 60.00086 * 15 13 12 32 32 H 1.08009 * 120.00120 * 0.02562 * 17 16 15 33 33 H 1.08007 * 119.99962 * 180.25500 * 18 17 16 34 34 H 1.07998 * 120.00075 * 179.78848 * 19 18 17 35 35 H 1.07995 * 120.00088 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6035 8 14 2.3226 -1.1198 -4.0078 9 1 3.1485 -2.2859 -3.6035 10 1 1.1679 -1.5868 -4.8164 11 1 3.1474 -0.1861 -4.8159 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0181 2.3572 14 8 1.8589 1.1587 2.4114 15 6 2.6497 -0.7284 3.5876 16 6 2.7009 0.2401 4.7410 17 6 1.6910 0.2445 5.6852 18 6 1.7401 1.1298 6.7455 19 6 2.7942 2.0175 6.8566 20 6 3.8013 2.0164 5.9101 21 6 3.7544 1.1278 4.8518 22 7 4.8328 1.1269 3.8380 23 8 5.8139 1.8321 3.9918 24 8 4.7392 0.4208 2.8500 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 0.7083 1.1606 -3.4844 29 1 2.2490 -1.6318 1.1528 30 1 1.9776 -1.5507 3.8327 31 1 3.6491 -1.1202 3.3980 32 1 0.8656 -0.4465 5.5965 33 1 0.9532 1.1304 7.4854 34 1 2.8308 2.7115 7.6832 35 1 4.6249 2.7095 5.9971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064333174.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:22 Heat of formation + Delta-G solvation = -38.583121 kcal Electronic energy + Delta-G solvation = -21582.669800 eV Core-core repulsion = 18162.119364 eV Total energy + Delta-G solvation = -3420.550437 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.32172 -40.96274 -39.89925 -37.74311 -36.71147 -34.37632 -34.04142 -32.86567 -31.13920 -28.97921 -27.35506 -27.15577 -23.90108 -23.57560 -22.58963 -21.19944 -20.08212 -19.66597 -18.98468 -18.54737 -17.51749 -17.35655 -16.90747 -16.83727 -15.96943 -15.71199 -15.53658 -14.83967 -14.52344 -14.30166 -13.91805 -13.76100 -13.44370 -13.22032 -12.97048 -12.84479 -12.73386 -12.58483 -12.42951 -12.29032 -12.27095 -12.11344 -11.77618 -11.09438 -10.87653 -10.59904 -10.52045 -10.10172 -9.73004 -8.17485 -6.34507 -1.19928 0.00203 0.31683 0.50743 1.43729 1.45539 1.57742 1.85448 2.26351 2.40886 2.76413 3.13143 3.27621 3.40956 3.78745 3.99662 4.03370 4.09837 4.22529 4.38538 4.47084 4.71465 4.77318 4.91006 4.91417 5.06416 5.09149 5.15883 5.25659 5.44205 5.61103 5.63098 5.69479 5.92477 6.10851 6.48509 6.73805 6.96913 7.33068 7.57214 8.89303 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027539 B = 0.004564 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.504846 B = 6133.067000 C = 6676.545099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.272 3.728 3 H -0.011 1.011 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.973 3.027 9 H -0.260 1.260 10 H -0.275 1.275 11 H -0.286 1.286 12 N -0.701 5.701 13 C 0.520 3.480 14 O -0.606 6.606 15 C -0.114 4.114 16 C -0.014 4.014 17 C -0.116 4.116 18 C -0.050 4.050 19 C -0.111 4.111 20 C -0.068 4.068 21 C -0.062 4.062 22 N 0.035 4.965 23 O -0.182 6.182 24 O -0.201 6.201 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.012 0.988 28 H 0.265 0.735 29 H 0.406 0.594 30 H 0.147 0.853 31 H 0.122 0.878 32 H 0.173 0.827 33 H 0.188 0.812 34 H 0.187 0.813 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 -4.090 22.339 22.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.169 3.831 3 H 0.006 0.994 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.183 1.183 10 H -0.201 1.201 11 H -0.212 1.212 12 N -0.350 5.350 13 C 0.307 3.693 14 O -0.489 6.489 15 C -0.154 4.154 16 C -0.016 4.016 17 C -0.134 4.134 18 C -0.067 4.067 19 C -0.130 4.130 20 C -0.087 4.087 21 C -0.146 4.146 22 N 0.545 4.455 23 O -0.396 6.396 24 O -0.408 6.408 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.241 0.759 30 H 0.164 0.836 31 H 0.140 0.860 32 H 0.190 0.810 33 H 0.206 0.794 34 H 0.204 0.796 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.143 -3.194 22.642 22.866 hybrid contribution 0.917 -0.289 -1.765 2.010 sum 0.774 -3.482 20.877 21.179 Atomic orbital electron populations 1.21863 0.97904 0.99632 0.99488 1.18301 0.91264 0.91499 0.82042 0.99358 1.21598 1.32334 1.13502 0.90858 0.90894 1.25817 0.94880 0.95600 1.02384 1.70062 1.37218 1.24060 1.24492 0.85278 0.78140 0.78506 0.78297 1.18332 1.20060 1.21178 1.46159 1.65060 1.14267 1.09475 1.20665 0.76553 0.86803 0.85280 1.90618 1.53869 1.18306 1.86113 1.21068 1.06530 0.98407 0.89347 1.19570 0.92053 0.93880 0.96048 1.21596 0.97026 1.01384 0.93393 1.22167 0.97660 0.90634 0.96259 1.21719 0.92187 1.00072 0.98983 1.21394 1.01086 0.95287 0.90982 1.21326 0.92152 1.07174 0.93898 1.44045 1.01818 0.98169 1.01454 1.94431 1.22850 1.39005 1.83331 1.94536 1.85903 1.39675 1.20642 0.93658 0.91681 0.96857 0.92601 0.75917 0.83555 0.86041 0.80992 0.79437 0.79619 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.71 9.26 71.98 0.67 -6.05 16 2 C 0.27 14.80 2.56 44.24 0.11 14.91 16 3 H -0.01 -0.75 7.58 -2.39 -0.02 -0.77 16 4 C -0.54 -30.09 8.73 25.60 0.22 -29.87 16 5 H 0.07 3.79 7.74 -2.91 -0.02 3.76 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -54.51 11.32 21.45 0.24 -54.27 16 8 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 9 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 N -0.70 -30.51 5.07 -446.08 -2.26 -32.77 16 13 C 0.52 21.53 6.19 87.66 0.54 22.07 16 14 O -0.61 -30.88 15.59 -3.01 -0.05 -30.93 16 15 C -0.11 -3.23 5.13 29.10 0.15 -3.08 16 16 C -0.01 -0.36 4.44 -19.87 -0.09 -0.45 16 17 C -0.12 -2.00 9.67 22.27 0.22 -1.78 16 18 C -0.05 -0.56 10.05 22.27 0.22 -0.33 16 19 C -0.11 -1.42 10.05 22.27 0.22 -1.19 16 20 C -0.07 -1.48 9.56 22.27 0.21 -1.26 16 21 C -0.06 -1.85 6.68 36.37 0.24 -1.61 16 22 N 0.03 1.32 4.45 -46.46 -0.21 1.11 16 23 O -0.18 -6.83 18.46 18.89 0.35 -6.49 16 24 O -0.20 -8.49 14.21 18.91 0.27 -8.22 16 25 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.06 3.69 6.07 -2.39 -0.01 3.68 16 27 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.41 14.74 8.54 -92.71 -0.79 13.95 16 30 H 0.15 2.73 8.00 -2.39 -0.02 2.71 16 31 H 0.12 3.49 6.12 -2.39 -0.01 3.47 16 32 H 0.17 1.95 8.04 -2.91 -0.02 1.93 16 33 H 0.19 0.43 8.06 -2.91 -0.02 0.40 16 34 H 0.19 0.81 8.06 -2.91 -0.02 0.78 16 35 H 0.16 3.03 7.62 -2.91 -0.02 3.01 16 Total: -1.00 -81.33 307.99 3.88 -77.45 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.34 Total: 16.07 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 3.17 Total: -7.49 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -2.23 Total: -85.93 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: 0.57 Total: -45.64 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -81.33 3.88 -77.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333174.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.863 kcal (2) G-P(sol) polarization free energy of solvation -81.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds