Wall clock time and date at job start Tue Mar 31 2020 01:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.47050 * 2 1 4 4 C 1.37104 * 120.00062 * 264.74830 * 3 2 1 5 5 H 1.07994 * 120.00110 * 146.15811 * 4 3 2 6 6 C 1.38952 * 119.99844 * 326.16595 * 4 3 2 7 7 N 1.31410 * 120.00059 * 337.68967 * 6 4 3 8 8 Si 1.86800 * 119.99966 * 157.69236 * 6 4 3 9 9 H 1.48495 * 109.47090 * 59.99751 * 8 6 4 10 10 H 1.48502 * 109.47252 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46803 * 299.99746 * 8 6 4 12 12 C 1.34769 * 120.00132 * 84.74942 * 3 2 1 13 13 O 1.21294 * 120.00369 * 179.97438 * 12 3 2 14 14 C 1.50708 * 119.99863 * 359.97438 * 12 3 2 15 15 C 1.50697 * 109.46841 * 179.97438 * 14 12 3 16 16 C 1.38236 * 119.99936 * 90.00577 * 15 14 12 17 17 C 1.38241 * 119.99886 * 180.02562 * 16 15 14 18 18 C 1.38231 * 120.00276 * 359.97438 * 17 16 15 19 19 N 1.48010 * 120.00296 * 179.97438 * 18 17 16 20 20 O 1.21808 * 119.99831 * 359.97438 * 19 18 17 21 21 O 1.21808 * 120.00468 * 179.97438 * 19 18 17 22 22 C 1.38236 * 119.99607 * 0.25816 * 18 17 16 23 23 C 1.38231 * 120.00225 * 270.02161 * 15 14 12 24 24 H 1.08999 * 109.47411 * 59.99991 * 1 2 3 25 25 H 1.09004 * 109.47352 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47058 * 299.99786 * 1 2 3 27 27 H 1.08999 * 109.47058 * 240.00214 * 2 1 3 28 28 H 1.08999 * 109.47411 * 120.00009 * 2 1 3 29 29 H 0.97004 * 120.00422 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.46904 * 60.00442 * 14 12 3 31 31 H 1.08996 * 109.46872 * 299.99947 * 14 12 3 32 32 H 1.07996 * 119.99961 * 359.97438 * 16 15 14 33 33 H 1.07999 * 119.99388 * 179.97438 * 17 16 15 34 34 H 1.08006 * 119.99698 * 179.72385 * 22 18 17 35 35 H 1.08006 * 120.00423 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3492 1.9914 -1.1824 5 1 2.1813 3.0506 -1.3089 6 6 2.9006 1.2467 -2.2179 7 7 3.5050 0.1088 -1.9595 8 14 2.7827 1.8632 -3.9773 9 1 3.4561 3.1822 -4.0858 10 1 3.4445 0.8937 -4.8869 11 1 1.3542 2.0039 -4.3577 12 6 2.1422 2.0522 1.1622 13 8 2.5469 3.1956 1.1623 14 6 1.7778 1.3818 2.4619 15 6 2.0062 2.3398 3.6025 16 6 0.9872 3.1773 4.0162 17 6 1.1968 4.0565 5.0622 18 6 2.4252 4.0978 5.6948 19 7 2.6498 5.0395 6.8144 20 8 1.7523 5.7785 7.1780 21 8 3.7320 5.0756 7.3722 22 6 3.4456 3.2636 5.2780 23 6 3.2346 2.3813 4.2349 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8902 -0.4109 -2.6823 30 1 2.3993 0.4971 2.6010 31 1 0.7284 1.0886 2.4377 32 1 0.0276 3.1454 3.5216 33 1 0.4008 4.7111 5.3850 34 1 4.4068 3.2990 5.7694 35 1 4.0310 1.7274 3.9114 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067687883.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:25 Heat of formation + Delta-G solvation = -11.864336 kcal Electronic energy + Delta-G solvation = -21036.326313 eV Core-core repulsion = 17616.934489 eV Total energy + Delta-G solvation = -3419.391823 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.08632 -39.77175 -38.38214 -36.49036 -35.20102 -33.19565 -32.09384 -31.35308 -29.62761 -28.87611 -25.85302 -24.47245 -23.13810 -22.47858 -21.70622 -19.27218 -19.09803 -18.59797 -17.45414 -16.97839 -16.20366 -15.67755 -15.59888 -15.02208 -14.72385 -14.09226 -14.05617 -13.76227 -13.21845 -13.07028 -12.65949 -12.18359 -12.09327 -11.78405 -11.60807 -11.51809 -11.23485 -11.16493 -11.11790 -11.09049 -11.06489 -10.47159 -10.46097 -10.23587 -9.35300 -9.32177 -9.07889 -8.56973 -7.65804 -6.47531 -4.08776 -0.06109 1.04663 1.45372 1.51127 3.09794 3.17551 3.20277 3.34956 3.69686 4.04241 4.42357 4.50927 4.55994 4.81390 4.87865 4.95906 5.04895 5.28352 5.47693 5.57247 5.64330 5.72575 5.79055 5.81463 5.92615 6.06800 6.15909 6.29349 6.33631 6.39258 6.58838 6.74431 7.11619 7.46543 7.72424 8.07854 8.34337 9.02682 9.24912 9.82234 10.56001 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031637 B = 0.003812 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.837661 B = 7342.748353 C = 7613.688100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 N -0.434 5.434 4 C -0.310 4.310 5 H 0.093 0.907 6 C 0.038 3.962 7 N -0.868 5.868 8 Si 0.919 3.081 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.457 3.543 13 O -0.578 6.578 14 C -0.113 4.113 15 C 0.015 3.985 16 C -0.109 4.109 17 C -0.053 4.053 18 C -0.059 4.059 19 N 0.035 4.965 20 O -0.171 6.171 21 O -0.171 6.171 22 C -0.052 4.052 23 C -0.107 4.107 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.041 0.959 27 H 0.115 0.885 28 H 0.048 0.952 29 H 0.270 0.730 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 -2.323 9.299 10.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.032 4.032 3 N -0.153 5.153 4 C -0.438 4.438 5 H 0.111 0.889 6 C -0.167 4.167 7 N -0.505 5.505 8 Si 0.745 3.255 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.244 3.756 13 O -0.462 6.462 14 C -0.153 4.153 15 C 0.014 3.986 16 C -0.127 4.127 17 C -0.072 4.072 18 C -0.142 4.142 19 N 0.552 4.448 20 O -0.386 6.386 21 O -0.385 6.385 22 C -0.071 4.071 23 C -0.125 4.125 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.133 0.867 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.835 -2.362 8.632 10.172 hybrid contribution 0.056 0.333 -0.630 0.714 sum -4.779 -2.030 8.002 9.539 Atomic orbital electron populations 1.22213 0.98067 1.00523 1.01519 1.21653 0.91832 0.85397 1.04335 1.43523 1.55205 1.11859 1.04723 1.19434 1.40202 0.95563 0.88605 0.88944 1.25336 0.94279 0.96425 1.00624 1.69895 1.32186 1.15218 1.33232 0.86117 0.78731 0.78863 0.81782 1.19671 1.20872 1.19814 1.19945 0.83359 0.88150 0.84133 1.90572 1.50438 1.18576 1.86583 1.20956 1.04066 0.97922 0.92379 1.20027 0.92797 0.93348 0.92456 1.21053 1.00533 0.95198 0.95950 1.20949 0.94962 0.97368 0.93910 1.21030 0.98729 0.99367 0.95063 1.43661 1.00007 1.00161 1.00975 1.94508 1.37340 1.38289 1.68441 1.94512 1.12871 1.74655 1.56480 1.20970 0.98243 0.92275 0.95611 1.21096 0.97507 0.99145 0.94789 0.92306 0.92912 0.94003 0.86708 0.93312 0.92002 0.88259 0.88499 0.83830 0.83283 0.83235 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 10.15 37.15 0.38 -2.24 16 2 C 0.09 1.79 5.43 -4.04 -0.02 1.76 16 3 N -0.43 -10.06 2.56 -114.81 -0.29 -10.36 16 4 C -0.31 -8.11 8.98 -14.93 -0.13 -8.25 16 5 H 0.09 2.56 7.70 -52.49 -0.40 2.16 16 6 C 0.04 0.94 4.92 -17.47 -0.09 0.86 16 7 N -0.87 -21.98 11.33 55.50 0.63 -21.35 16 8 Si 0.92 19.64 29.61 -169.99 -5.03 14.61 16 9 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 12 C 0.46 10.00 7.59 -10.98 -0.08 9.92 16 13 O -0.58 -14.95 15.86 5.55 0.09 -14.87 16 14 C -0.11 -1.74 4.44 -29.03 -0.13 -1.87 16 15 C 0.01 0.21 4.37 -104.63 -0.46 -0.25 16 16 C -0.11 -1.44 9.70 -39.58 -0.38 -1.83 16 17 C -0.05 -0.69 9.56 -39.58 -0.38 -1.07 16 18 C -0.06 -0.85 6.85 -79.95 -0.55 -1.39 16 19 N 0.04 0.55 4.45 33.96 0.15 0.70 16 20 O -0.17 -2.72 18.45 -29.46 -0.54 -3.27 16 21 O -0.17 -2.73 18.45 -29.46 -0.54 -3.27 16 22 C -0.05 -0.69 9.56 -39.58 -0.38 -1.07 16 23 C -0.11 -1.46 9.70 -39.58 -0.38 -1.85 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.59 6.59 -51.93 -0.34 0.25 16 27 H 0.12 2.53 5.34 -51.93 -0.28 2.25 16 28 H 0.05 0.83 6.66 -51.93 -0.35 0.49 16 29 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 30 H 0.10 1.36 7.35 -51.93 -0.38 0.98 16 31 H 0.10 1.26 6.48 -51.93 -0.34 0.92 16 32 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.15 1.67 7.61 -52.49 -0.40 1.27 16 34 H 0.15 1.73 7.61 -52.48 -0.40 1.33 16 35 H 0.15 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 309.33 15.07 4.66 4.66 Total: -1.00 -30.39 309.33 -7.20 -37.60 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -3.71 Total: 2.82 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.61 Total: -7.28 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: 0.49 Total: -31.01 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -1.00 Total: -21.40 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.39 -7.20 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687883.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.734 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds