Wall clock time and date at job start Tue Mar 31 2020 01:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.47050 * 2 1 4 4 C 1.37104 * 120.00062 * 264.74830 * 3 2 1 5 5 H 1.07994 * 120.00110 * 146.15811 * 4 3 2 6 6 C 1.38952 * 119.99844 * 326.16595 * 4 3 2 7 7 N 1.31410 * 120.00059 * 337.68967 * 6 4 3 8 8 Si 1.86800 * 119.99966 * 157.69236 * 6 4 3 9 9 H 1.48495 * 109.47090 * 59.99751 * 8 6 4 10 10 H 1.48502 * 109.47252 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46803 * 299.99746 * 8 6 4 12 12 C 1.34769 * 120.00132 * 84.74942 * 3 2 1 13 13 O 1.21294 * 120.00369 * 179.97438 * 12 3 2 14 14 C 1.50708 * 119.99863 * 359.97438 * 12 3 2 15 15 C 1.50697 * 109.46841 * 179.97438 * 14 12 3 16 16 C 1.38236 * 119.99936 * 90.00577 * 15 14 12 17 17 C 1.38241 * 119.99886 * 180.02562 * 16 15 14 18 18 C 1.38231 * 120.00276 * 359.97438 * 17 16 15 19 19 N 1.48010 * 120.00296 * 179.97438 * 18 17 16 20 20 O 1.21808 * 119.99831 * 359.97438 * 19 18 17 21 21 O 1.21808 * 120.00468 * 179.97438 * 19 18 17 22 22 C 1.38236 * 119.99607 * 0.25816 * 18 17 16 23 23 C 1.38231 * 120.00225 * 270.02161 * 15 14 12 24 24 H 1.08999 * 109.47411 * 59.99991 * 1 2 3 25 25 H 1.09004 * 109.47352 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47058 * 299.99786 * 1 2 3 27 27 H 1.08999 * 109.47058 * 240.00214 * 2 1 3 28 28 H 1.08999 * 109.47411 * 120.00009 * 2 1 3 29 29 H 0.97004 * 120.00422 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.46904 * 60.00442 * 14 12 3 31 31 H 1.08996 * 109.46872 * 299.99947 * 14 12 3 32 32 H 1.07996 * 119.99961 * 359.97438 * 16 15 14 33 33 H 1.07999 * 119.99388 * 179.97438 * 17 16 15 34 34 H 1.08006 * 119.99698 * 179.72385 * 22 18 17 35 35 H 1.08006 * 120.00423 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3492 1.9914 -1.1824 5 1 2.1813 3.0506 -1.3089 6 6 2.9006 1.2467 -2.2179 7 7 3.5050 0.1088 -1.9595 8 14 2.7827 1.8632 -3.9773 9 1 3.4561 3.1822 -4.0858 10 1 3.4445 0.8937 -4.8869 11 1 1.3542 2.0039 -4.3577 12 6 2.1422 2.0522 1.1622 13 8 2.5469 3.1956 1.1623 14 6 1.7778 1.3818 2.4619 15 6 2.0062 2.3398 3.6025 16 6 0.9872 3.1773 4.0162 17 6 1.1968 4.0565 5.0622 18 6 2.4252 4.0978 5.6948 19 7 2.6498 5.0395 6.8144 20 8 1.7523 5.7785 7.1780 21 8 3.7320 5.0756 7.3722 22 6 3.4456 3.2636 5.2780 23 6 3.2346 2.3813 4.2349 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8902 -0.4109 -2.6823 30 1 2.3993 0.4971 2.6010 31 1 0.7284 1.0886 2.4377 32 1 0.0276 3.1454 3.5216 33 1 0.4008 4.7111 5.3850 34 1 4.4068 3.2990 5.7694 35 1 4.0310 1.7274 3.9114 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067687883.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:24 Heat of formation + Delta-G solvation = -28.092996 kcal Electronic energy + Delta-G solvation = -21037.030040 eV Core-core repulsion = 17616.934489 eV Total energy + Delta-G solvation = -3420.095551 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.27239 -41.05032 -39.85711 -37.70351 -36.92997 -34.51391 -33.80268 -32.38394 -31.16066 -30.15174 -27.35339 -25.98560 -24.18206 -23.92442 -22.93155 -20.70528 -20.38989 -19.79682 -18.74409 -18.64556 -17.81937 -17.01385 -16.81396 -16.59235 -15.90264 -15.60055 -15.53201 -14.80637 -14.62986 -14.48326 -13.96420 -13.65280 -13.58465 -13.12043 -12.95754 -12.82228 -12.77141 -12.64203 -12.38371 -12.32876 -12.27940 -12.16727 -12.10512 -11.76311 -10.88037 -10.63566 -10.34167 -10.17874 -9.46704 -8.35423 -6.03813 -1.22727 0.02572 0.29541 0.36863 1.37751 1.42245 1.50797 2.03648 2.21361 2.34534 3.01235 3.13562 3.40523 3.49911 3.56546 3.86986 3.99887 4.10526 4.29429 4.35814 4.40171 4.62330 4.67766 4.70914 4.77044 4.80684 4.91517 5.08596 5.15799 5.28718 5.36994 5.46221 5.51779 5.62342 6.20248 6.49664 6.52541 7.18370 7.49159 8.06523 8.65848 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031637 B = 0.003812 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.837661 B = 7342.748353 C = 7613.688100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.089 3.911 3 N -0.450 5.450 4 C -0.342 4.342 5 H 0.062 0.938 6 C 0.008 3.992 7 N -0.884 5.884 8 Si 0.974 3.026 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.265 1.265 12 C 0.448 3.552 13 O -0.628 6.628 14 C -0.098 4.098 15 C -0.001 4.001 16 C -0.108 4.108 17 C -0.052 4.052 18 C -0.071 4.071 19 N 0.035 4.965 20 O -0.178 6.178 21 O -0.184 6.184 22 C -0.053 4.053 23 C -0.112 4.112 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.274 0.726 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.164 0.836 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 -3.533 9.707 11.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.034 4.034 3 N -0.168 5.168 4 C -0.470 4.470 5 H 0.080 0.920 6 C -0.195 4.195 7 N -0.521 5.521 8 Si 0.798 3.202 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.190 1.190 12 C 0.238 3.762 13 O -0.515 6.515 14 C -0.137 4.137 15 C -0.002 4.002 16 C -0.127 4.127 17 C -0.071 4.071 18 C -0.154 4.154 19 N 0.549 4.451 20 O -0.392 6.392 21 O -0.397 6.397 22 C -0.072 4.072 23 C -0.130 4.130 24 H 0.055 0.945 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.146 0.854 32 H 0.183 0.817 33 H 0.185 0.815 34 H 0.182 0.818 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.898 -3.607 9.058 11.395 hybrid contribution 0.402 0.713 -0.733 1.098 sum -5.496 -2.894 8.325 10.387 Atomic orbital electron populations 1.22119 0.95241 1.02549 1.01452 1.21770 0.94145 0.83303 1.04187 1.43789 1.55468 1.13154 1.04432 1.19313 1.41922 0.94772 0.90986 0.92017 1.25938 0.93617 0.96572 1.03382 1.69955 1.32213 1.15774 1.34194 0.85298 0.78951 0.77978 0.77981 1.20639 1.19701 1.19001 1.20924 0.81921 0.87563 0.85829 1.90535 1.52395 1.20913 1.87661 1.20844 1.06273 0.97981 0.88610 1.20130 0.93573 0.93904 0.92595 1.21321 1.01219 0.94446 0.95676 1.21192 0.94982 0.97381 0.93504 1.21262 0.99695 0.99507 0.94980 1.43858 0.99815 1.00229 1.01180 1.94493 1.37320 1.38655 1.68740 1.94503 1.13076 1.75036 1.57036 1.21155 0.98727 0.91836 0.95491 1.21302 0.97721 0.99328 0.94679 0.94456 0.89776 0.91989 0.89479 0.90739 0.91647 0.86164 0.85424 0.81722 0.81500 0.81843 0.82450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.53 10.15 71.98 0.73 -3.80 16 2 C 0.09 3.32 5.43 86.38 0.47 3.78 16 3 N -0.45 -20.74 2.56 -635.54 -1.63 -22.37 16 4 C -0.34 -18.26 8.98 84.04 0.75 -17.51 16 5 H 0.06 3.59 7.70 -2.91 -0.02 3.57 16 6 C 0.01 0.40 4.92 84.93 0.42 0.82 16 7 N -0.88 -44.74 11.33 21.66 0.25 -44.49 16 8 Si 0.97 40.49 29.61 68.60 2.03 42.52 16 9 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 11 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 12 C 0.45 19.31 7.59 87.66 0.66 19.97 16 13 O -0.63 -32.90 15.86 -3.07 -0.05 -32.95 16 14 C -0.10 -2.74 4.44 29.10 0.13 -2.61 16 15 C 0.00 -0.03 4.37 -19.87 -0.09 -0.12 16 16 C -0.11 -2.61 9.70 22.27 0.22 -2.39 16 17 C -0.05 -1.25 9.56 22.27 0.21 -1.04 16 18 C -0.07 -1.95 6.85 36.37 0.25 -1.70 16 19 N 0.03 1.05 4.45 -46.47 -0.21 0.85 16 20 O -0.18 -5.49 18.45 18.88 0.35 -5.14 16 21 O -0.18 -5.78 18.45 18.88 0.35 -5.43 16 22 C -0.05 -1.35 9.56 22.27 0.21 -1.13 16 23 C -0.11 -2.87 9.70 22.27 0.22 -2.65 16 24 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.06 1.54 6.59 -2.39 -0.02 1.52 16 27 H 0.09 3.78 5.34 -2.39 -0.01 3.77 16 28 H 0.07 2.33 6.66 -2.39 -0.02 2.32 16 29 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 30 H 0.12 2.88 7.35 -2.39 -0.02 2.87 16 31 H 0.13 2.78 6.48 -2.39 -0.02 2.77 16 32 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.17 3.37 7.61 -2.91 -0.02 3.34 16 34 H 0.16 3.57 7.61 -2.91 -0.02 3.55 16 35 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -67.28 309.33 6.40 -60.88 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 1.12 Total: 14.54 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 4.19 Total: -8.39 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -1.59 Total: -66.02 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: 0.65 Total: -43.52 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -67.28 6.40 -60.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687883.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.784 kcal (2) G-P(sol) polarization free energy of solvation -67.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds