Wall clock time and date at job start Tue Mar 31 2020 00:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.51086 * 2 1 4 4 C 1.53296 * 109.50933 * 239.90342 * 2 1 3 5 5 N 1.47156 * 108.38233 * 187.72069 * 4 2 1 6 6 S 1.65597 * 120.98532 * 230.26339 * 5 4 2 7 7 O 1.42092 * 106.40424 * 203.54155 * 6 5 4 8 8 O 1.42106 * 106.39802 * 336.45782 * 6 5 4 9 9 N 1.65600 * 107.22001 * 89.99865 * 6 5 4 10 10 C 1.46503 * 119.99925 * 269.99910 * 9 6 5 11 11 C 1.46492 * 119.99916 * 90.00248 * 9 6 5 12 12 C 1.50698 * 109.47492 * 95.00156 * 11 9 6 13 13 H 1.08005 * 119.99444 * 359.97438 * 12 11 9 14 14 C 1.37870 * 120.00603 * 180.02562 * 12 11 9 15 15 N 1.31519 * 119.99965 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00326 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47446 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47549 * 119.99856 * 16 14 12 19 19 H 1.48503 * 109.47295 * 239.99523 * 16 14 12 20 20 C 1.47151 * 118.03191 * 50.53556 * 5 4 2 21 21 C 1.53293 * 108.38543 * 309.46299 * 20 5 4 22 22 O 1.42957 * 109.55235 * 120.13320 * 2 1 3 23 23 H 1.09003 * 109.47067 * 180.09714 * 1 2 3 24 24 H 1.08998 * 109.47470 * 300.09680 * 1 2 3 25 25 H 1.09008 * 109.47208 * 60.09875 * 1 2 3 26 26 H 1.09002 * 109.68649 * 68.00336 * 4 2 1 27 27 H 1.08998 * 109.71498 * 307.45966 * 4 2 1 28 28 H 1.09004 * 109.46556 * 90.00006 * 10 9 6 29 29 H 1.08996 * 109.47346 * 209.99909 * 10 9 6 30 30 H 1.08998 * 109.47553 * 330.00535 * 10 9 6 31 31 H 1.09001 * 109.47123 * 214.99759 * 11 9 6 32 32 H 1.08994 * 109.47426 * 334.99851 * 11 9 6 33 33 H 0.96993 * 120.00226 * 180.02562 * 15 14 12 34 34 H 1.08998 * 109.68184 * 69.18893 * 20 5 4 35 35 H 1.09003 * 109.67897 * 189.73849 * 20 5 4 36 36 H 1.09001 * 109.51429 * 292.37701 * 21 20 5 37 37 H 1.08999 * 109.51414 * 172.22907 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2501 5 7 3.5013 -0.8745 -1.1347 6 16 4.5053 -0.4221 -2.3715 7 8 5.7045 -1.1666 -2.2076 8 8 3.7231 -0.4597 -3.5573 9 7 4.9033 1.1661 -2.1238 10 6 4.0737 2.2275 -2.6995 11 6 6.0851 1.5097 -1.3292 12 6 7.2600 1.7321 -2.2464 13 1 7.1385 1.6274 -3.3145 14 6 8.4900 2.0680 -1.7221 15 7 8.6380 2.1950 -0.4215 16 14 9.9465 2.3429 -2.8590 17 1 9.5205 2.1402 -4.2671 18 1 10.4525 3.7287 -2.6892 19 1 11.0245 1.3779 -2.5247 20 6 4.0417 -1.4440 0.1099 21 6 3.4323 -0.6843 1.2937 22 8 2.0085 -0.6763 1.1651 23 1 -0.3633 -1.0277 0.0017 24 1 -0.3634 0.5153 0.8891 25 1 -0.3634 0.5123 -0.8909 26 1 1.8023 -0.1392 -2.1379 27 1 1.5765 -1.7076 -1.3219 28 1 3.2922 2.5023 -1.9910 29 1 4.6937 3.0983 -2.9122 30 1 3.6177 1.8717 -3.6233 31 1 5.8896 2.4199 -0.7622 32 1 6.3102 0.6946 -0.6416 33 1 9.5033 2.4317 -0.0526 34 1 3.7775 -2.4994 0.1758 35 1 5.1262 -1.3350 0.1229 36 1 3.8033 0.3406 1.2985 37 1 3.7108 -1.1774 2.2250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075657272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:50 Heat of formation + Delta-G solvation = -115.829468 kcal Electronic energy + Delta-G solvation = -21459.484949 eV Core-core repulsion = 18171.028811 eV Total energy + Delta-G solvation = -3288.456138 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.31139 -36.74729 -35.53253 -35.22326 -34.65168 -32.92483 -32.47016 -28.53038 -27.80722 -25.84600 -25.07140 -23.10651 -22.30168 -20.90140 -18.58222 -17.48692 -16.82844 -16.57242 -16.39544 -15.85959 -15.27432 -14.88945 -14.77908 -14.29297 -14.05552 -13.48409 -13.31951 -12.84053 -12.48125 -12.33288 -12.22845 -12.14512 -11.86243 -11.80256 -11.61313 -11.30094 -11.21575 -11.18272 -11.12503 -10.74129 -10.62252 -10.40270 -10.18711 -10.01870 -9.76690 -8.71222 -8.48193 -8.10174 -6.10520 -4.14532 1.09994 3.28709 3.35030 3.36569 3.42418 3.71114 4.02378 4.41794 4.59433 4.85745 4.87080 5.02660 5.14022 5.19247 5.24856 5.32251 5.45713 5.54546 5.59880 5.60340 5.70147 5.82062 5.91932 5.93677 6.05399 6.16516 6.28085 6.45953 6.64841 7.15170 7.16903 7.34506 7.55089 7.87262 8.15872 8.88256 9.51162 10.98137 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026416 B = 0.005979 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.711538 B = 4682.218904 C = 4956.727913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 H 0.065 0.935 4 C 0.096 3.904 5 N -1.015 6.015 6 S 2.780 3.220 7 O -0.959 6.959 8 O -0.994 6.994 9 N -0.996 5.996 10 C 0.096 3.904 11 C 0.258 3.742 12 C -0.529 4.529 13 H 0.060 0.940 14 C 0.062 3.938 15 N -0.896 5.896 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.089 3.911 21 C 0.049 3.951 22 O -0.379 6.379 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.036 0.964 33 H 0.263 0.737 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.561 -3.211 2.734 15.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 H 0.083 0.917 4 C -0.030 4.030 5 N -0.854 5.854 6 S 2.789 3.211 7 O -0.943 6.943 8 O -0.978 6.978 9 N -0.839 5.839 10 C -0.051 4.051 11 C 0.136 3.864 12 C -0.568 4.568 13 H 0.079 0.921 14 C -0.140 4.140 15 N -0.535 5.535 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.037 4.037 21 C -0.029 4.029 22 O -0.298 6.298 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.079 0.921 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.241 -3.808 2.277 14.916 hybrid contribution 1.035 0.571 -0.366 1.237 sum -13.206 -3.237 1.911 13.731 Atomic orbital electron populations 1.21738 0.92614 1.03052 1.02699 1.22457 0.95092 0.95593 0.85552 0.91738 1.22027 0.80329 1.01783 0.98880 1.58635 1.16321 1.77957 1.32485 1.02096 0.72601 0.73562 0.72873 1.93621 1.44607 1.70229 1.85815 1.93514 1.72163 1.87352 1.44808 1.57692 1.37130 1.22326 1.66745 1.21343 0.94157 0.92574 0.97035 1.19048 0.80098 0.97021 0.90267 1.21522 0.94069 1.47317 0.93906 0.92129 1.24928 0.98765 0.95095 0.95202 1.69921 1.24616 1.48232 1.10739 0.86449 0.82332 0.77664 0.81053 1.19642 1.20932 1.20757 1.22048 0.99986 0.97992 0.83678 1.22963 0.80870 1.00782 0.98246 1.87900 1.21229 1.77544 1.43079 0.91676 0.91588 0.90809 0.88837 0.90777 0.94460 0.90301 0.91613 0.94769 0.94647 0.92704 0.90797 0.87914 0.92096 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.57 37.16 0.36 -0.92 16 2 C 0.07 0.86 3.40 -26.58 -0.09 0.76 16 3 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.10 1.25 5.85 -3.53 -0.02 1.23 16 5 N -1.02 -16.09 3.40 -113.06 -0.38 -16.47 16 6 S 2.78 55.72 6.07 -107.50 -0.65 55.07 16 7 O -0.96 -22.86 15.91 -57.17 -0.91 -23.77 16 8 O -0.99 -20.66 15.55 -57.17 -0.89 -21.55 16 9 N -1.00 -20.51 3.23 -123.06 -0.40 -20.91 16 10 C 0.10 1.62 10.68 59.85 0.64 2.26 16 11 C 0.26 6.34 5.08 -5.20 -0.03 6.31 16 12 C -0.53 -14.73 9.38 -34.44 -0.32 -15.05 16 13 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 16 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.09 1.28 6.57 -3.54 -0.02 1.26 16 21 C 0.05 0.63 6.98 37.31 0.26 0.89 16 22 O -0.38 -5.00 10.39 -35.23 -0.37 -5.36 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 26 H 0.09 1.16 7.26 -51.93 -0.38 0.78 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.07 1.05 7.02 -51.93 -0.36 0.69 16 31 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 32 H 0.04 0.91 7.61 -51.93 -0.40 0.52 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.62 7.25 -51.93 -0.38 1.25 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 316.36 15.07 4.77 4.77 Total: -1.00 -33.20 316.36 -8.14 -41.34 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -5.70 Total: -3.18 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 0.67 Total: -1.61 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -0.04 Total: -62.41 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -2.16 Total: -50.68 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 55.72 SS G_CDS: -0.65 Total: 55.07 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.20 -8.14 -41.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075657272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.487 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds