Wall clock time and date at job start Tue Mar 31 2020 00:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.51086 * 2 1 4 4 C 1.53296 * 109.50933 * 239.90342 * 2 1 3 5 5 N 1.47156 * 108.38233 * 187.72069 * 4 2 1 6 6 S 1.65597 * 120.98532 * 230.26339 * 5 4 2 7 7 O 1.42092 * 106.40424 * 203.54155 * 6 5 4 8 8 O 1.42106 * 106.39802 * 336.45782 * 6 5 4 9 9 N 1.65600 * 107.22001 * 89.99865 * 6 5 4 10 10 C 1.46503 * 119.99925 * 269.99910 * 9 6 5 11 11 C 1.46492 * 119.99916 * 90.00248 * 9 6 5 12 12 C 1.50698 * 109.47492 * 95.00156 * 11 9 6 13 13 H 1.08005 * 119.99444 * 359.97438 * 12 11 9 14 14 C 1.37870 * 120.00603 * 180.02562 * 12 11 9 15 15 N 1.31519 * 119.99965 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00326 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47446 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47549 * 119.99856 * 16 14 12 19 19 H 1.48503 * 109.47295 * 239.99523 * 16 14 12 20 20 C 1.47151 * 118.03191 * 50.53556 * 5 4 2 21 21 C 1.53293 * 108.38543 * 309.46299 * 20 5 4 22 22 O 1.42957 * 109.55235 * 120.13320 * 2 1 3 23 23 H 1.09003 * 109.47067 * 180.09714 * 1 2 3 24 24 H 1.08998 * 109.47470 * 300.09680 * 1 2 3 25 25 H 1.09008 * 109.47208 * 60.09875 * 1 2 3 26 26 H 1.09002 * 109.68649 * 68.00336 * 4 2 1 27 27 H 1.08998 * 109.71498 * 307.45966 * 4 2 1 28 28 H 1.09004 * 109.46556 * 90.00006 * 10 9 6 29 29 H 1.08996 * 109.47346 * 209.99909 * 10 9 6 30 30 H 1.08998 * 109.47553 * 330.00535 * 10 9 6 31 31 H 1.09001 * 109.47123 * 214.99759 * 11 9 6 32 32 H 1.08994 * 109.47426 * 334.99851 * 11 9 6 33 33 H 0.96993 * 120.00226 * 180.02562 * 15 14 12 34 34 H 1.08998 * 109.68184 * 69.18893 * 20 5 4 35 35 H 1.09003 * 109.67897 * 189.73849 * 20 5 4 36 36 H 1.09001 * 109.51429 * 292.37701 * 21 20 5 37 37 H 1.08999 * 109.51414 * 172.22907 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2501 5 7 3.5013 -0.8745 -1.1347 6 16 4.5053 -0.4221 -2.3715 7 8 5.7045 -1.1666 -2.2076 8 8 3.7231 -0.4597 -3.5573 9 7 4.9033 1.1661 -2.1238 10 6 4.0737 2.2275 -2.6995 11 6 6.0851 1.5097 -1.3292 12 6 7.2600 1.7321 -2.2464 13 1 7.1385 1.6274 -3.3145 14 6 8.4900 2.0680 -1.7221 15 7 8.6380 2.1950 -0.4215 16 14 9.9465 2.3429 -2.8590 17 1 9.5205 2.1402 -4.2671 18 1 10.4525 3.7287 -2.6892 19 1 11.0245 1.3779 -2.5247 20 6 4.0417 -1.4440 0.1099 21 6 3.4323 -0.6843 1.2937 22 8 2.0085 -0.6763 1.1651 23 1 -0.3633 -1.0277 0.0017 24 1 -0.3634 0.5153 0.8891 25 1 -0.3634 0.5123 -0.8909 26 1 1.8023 -0.1392 -2.1379 27 1 1.5765 -1.7076 -1.3219 28 1 3.2922 2.5023 -1.9910 29 1 4.6937 3.0983 -2.9122 30 1 3.6177 1.8717 -3.6233 31 1 5.8896 2.4199 -0.7622 32 1 6.3102 0.6946 -0.6416 33 1 9.5033 2.4317 -0.0526 34 1 3.7775 -2.4994 0.1758 35 1 5.1262 -1.3350 0.1229 36 1 3.8033 0.3406 1.2985 37 1 3.7108 -1.1774 2.2250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075657272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:50 Heat of formation + Delta-G solvation = -140.887266 kcal Electronic energy + Delta-G solvation = -21460.571537 eV Core-core repulsion = 18171.028811 eV Total energy + Delta-G solvation = -3289.542726 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35019 -38.42389 -37.25492 -36.92149 -35.82427 -34.52834 -33.85486 -29.73181 -29.48605 -27.00976 -26.66695 -24.34277 -24.00243 -21.94316 -20.01430 -19.10748 -18.48494 -18.32509 -17.69380 -17.21952 -16.63380 -16.34904 -15.92245 -15.72110 -15.27608 -15.11575 -14.94939 -14.10320 -14.00121 -13.81417 -13.44014 -13.33881 -13.26758 -13.11826 -13.06305 -12.97566 -12.75443 -12.70685 -12.50709 -12.45252 -12.13481 -12.04422 -11.75841 -11.44156 -11.26648 -10.61539 -9.86363 -9.81224 -8.22897 -6.34692 -0.45877 1.37194 1.39912 1.51244 1.91062 2.37245 2.50019 2.77876 3.08141 3.26055 3.67406 3.75782 4.02612 4.10255 4.13476 4.18445 4.33249 4.41869 4.60535 4.65972 4.72409 4.77683 4.84382 4.90412 4.97605 5.03722 5.12781 5.15370 5.31865 5.37833 5.50197 5.67685 5.90538 6.07863 6.18530 6.73383 7.34487 8.84814 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026416 B = 0.005979 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.711538 B = 4682.218904 C = 4956.727913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.069 3.931 3 H 0.061 0.939 4 C 0.088 3.912 5 N -1.010 6.010 6 S 2.792 3.208 7 O -1.004 7.004 8 O -1.003 7.003 9 N -1.004 6.004 10 C 0.089 3.911 11 C 0.274 3.726 12 C -0.550 4.550 13 H 0.050 0.950 14 C 0.014 3.986 15 N -0.922 5.922 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.269 1.269 19 H -0.279 1.279 20 C 0.083 3.917 21 C 0.054 3.946 22 O -0.384 6.384 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.028 0.972 32 H 0.017 0.983 33 H 0.268 0.732 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.905 -3.057 2.768 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.010 3.990 3 H 0.079 0.921 4 C -0.037 4.037 5 N -0.851 5.851 6 S 2.802 3.198 7 O -0.988 6.988 8 O -0.987 6.987 9 N -0.845 5.845 10 C -0.057 4.057 11 C 0.150 3.850 12 C -0.590 4.590 13 H 0.068 0.932 14 C -0.185 4.185 15 N -0.562 5.562 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.194 1.194 19 H -0.204 1.204 20 C -0.042 4.042 21 C -0.024 4.024 22 O -0.303 6.303 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.111 0.889 26 H 0.119 0.881 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.608 -3.638 2.293 16.190 hybrid contribution 1.357 0.492 -0.360 1.487 sum -14.251 -3.147 1.933 14.722 Atomic orbital electron populations 1.21754 0.90116 1.03795 1.03913 1.22627 0.96959 0.94994 0.84429 0.92093 1.22361 0.78167 1.03111 1.00019 1.58284 1.17313 1.77547 1.31997 1.01457 0.72089 0.73063 0.73171 1.93557 1.47295 1.71330 1.86609 1.93489 1.72020 1.87383 1.45848 1.57592 1.36779 1.23473 1.66684 1.21571 0.94364 0.91400 0.98328 1.18601 0.80785 0.95839 0.89742 1.21844 0.95678 1.47562 0.93870 0.93207 1.25710 1.01315 0.94841 0.96665 1.69999 1.25477 1.48696 1.12026 0.85547 0.79104 0.78212 0.79085 1.19599 1.19402 1.20432 1.22215 0.99042 0.99335 0.83615 1.22973 0.80843 1.00146 0.98440 1.87909 1.21013 1.77685 1.43656 0.91171 0.91074 0.88938 0.88114 0.89256 0.91054 0.91016 0.90629 0.95434 0.96474 0.92297 0.88925 0.89955 0.93232 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.57 71.98 0.69 -1.34 16 2 C 0.07 1.47 3.40 30.69 0.10 1.57 16 3 H 0.06 1.34 8.14 -2.38 -0.02 1.33 16 4 C 0.09 2.11 5.85 86.35 0.51 2.61 16 5 N -1.01 -31.13 3.40 -511.61 -1.74 -32.87 16 6 S 2.79 112.07 6.07 -56.49 -0.34 111.72 16 7 O -1.00 -49.09 15.91 -128.00 -2.04 -51.13 16 8 O -1.00 -40.97 15.55 -128.00 -1.99 -42.96 16 9 N -1.00 -41.41 3.23 -543.25 -1.75 -43.16 16 10 C 0.09 2.91 10.68 127.77 1.36 4.28 16 11 C 0.27 13.76 5.08 85.63 0.43 14.19 16 12 C -0.55 -31.15 9.38 25.60 0.24 -30.90 16 13 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 14 C 0.01 0.81 5.46 84.65 0.46 1.28 16 15 N -0.92 -53.47 13.29 21.45 0.28 -53.18 16 16 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 C 0.08 2.36 6.57 86.35 0.57 2.92 16 21 C 0.05 1.32 6.98 72.08 0.50 1.82 16 22 O -0.38 -9.30 10.39 -148.98 -1.55 -10.84 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.10 2.26 7.26 -2.39 -0.02 2.24 16 27 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 30 H 0.08 2.32 7.02 -2.39 -0.02 2.30 16 31 H 0.03 1.40 8.11 -2.39 -0.02 1.38 16 32 H 0.02 0.92 7.61 -2.39 -0.02 0.90 16 33 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 2.68 7.25 -2.39 -0.02 2.66 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -70.80 316.36 -1.18 -71.98 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.04 Total: 7.46 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 4.87 Total: -3.57 kcal Atomic # 7 Polarization: -126.01 SS G_CDS: -3.21 Total: -129.21 kcal Atomic # 8 Polarization: -99.35 SS G_CDS: -5.57 Total: -104.93 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 112.07 SS G_CDS: -0.34 Total: 111.72 kcal Total: -70.80 -1.18 -71.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075657272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.910 kcal (2) G-P(sol) polarization free energy of solvation -70.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds