Wall clock time and date at job start Tue Mar 31 2020 00:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.51035 * 2 1 4 4 C 1.53706 * 109.44288 * 120.28806 * 2 1 3 5 5 N 1.47147 * 108.16150 * 172.37414 * 4 2 1 6 6 S 1.65604 * 120.98332 * 129.43437 * 5 4 2 7 7 O 1.42101 * 106.40405 * 156.17844 * 6 5 4 8 8 O 1.42101 * 106.40196 * 23.25443 * 6 5 4 9 9 N 1.65599 * 107.21451 * 269.71594 * 6 5 4 10 10 C 1.46506 * 120.00145 * 90.00096 * 9 6 5 11 11 C 1.46496 * 120.00096 * 269.99597 * 9 6 5 12 12 C 1.50700 * 109.47432 * 264.99977 * 11 9 6 13 13 H 1.07999 * 119.99834 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00101 * 179.97438 * 12 11 9 15 15 N 1.31510 * 120.00089 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00051 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47043 * 60.00015 * 16 14 12 18 18 H 1.48500 * 109.47388 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46921 * 300.00350 * 16 14 12 20 20 C 1.47155 * 118.03779 * 309.15499 * 5 4 2 21 21 C 1.53293 * 108.37894 * 50.78743 * 20 5 4 22 22 O 1.42962 * 109.51065 * 239.89915 * 2 1 3 23 23 H 1.09005 * 109.47445 * 180.09706 * 1 2 3 24 24 H 1.08999 * 109.47452 * 300.10569 * 1 2 3 25 25 H 1.09004 * 109.47373 * 60.10010 * 1 2 3 26 26 H 1.09000 * 109.84225 * 52.69381 * 4 2 1 27 27 H 1.09005 * 109.74742 * 292.00294 * 4 2 1 28 28 H 1.09001 * 109.47060 * 270.00189 * 10 9 6 29 29 H 1.09004 * 109.47073 * 29.99678 * 10 9 6 30 30 H 1.09000 * 109.47212 * 149.99761 * 10 9 6 31 31 H 1.08995 * 109.47319 * 25.00406 * 11 9 6 32 32 H 1.09007 * 109.47165 * 145.00156 * 11 9 6 33 33 H 0.97001 * 120.00107 * 179.97438 * 15 14 12 34 34 H 1.08995 * 109.68551 * 170.51320 * 20 5 4 35 35 H 1.08997 * 109.68318 * 291.02813 * 20 5 4 36 36 H 1.08994 * 109.51697 * 67.62541 * 21 20 5 37 37 H 1.09004 * 109.50891 * 187.77178 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0416 -0.7310 1.2516 5 7 3.5011 -0.8767 1.1331 6 16 4.5064 -0.4203 2.3675 7 8 5.7050 -1.1662 2.2055 8 8 3.7251 -0.4525 3.5540 9 7 4.9053 1.1667 2.1132 10 6 4.0768 2.2310 2.6853 11 6 6.0867 1.5064 1.3164 12 6 7.2624 1.7316 2.2319 13 1 7.1418 1.6312 3.3004 14 6 8.4924 2.0646 1.7053 15 7 8.6394 2.1864 0.4041 16 14 9.9499 2.3430 2.8400 17 1 10.2155 1.1057 3.6171 18 1 11.1474 2.6875 2.0322 19 1 9.6451 3.4576 3.7728 20 6 4.0406 -1.4458 -0.1121 21 6 3.4312 -0.6849 -1.2951 22 8 2.0075 -0.6758 -1.1658 23 1 -0.3634 -1.0277 0.0017 24 1 -0.3634 0.5155 0.8890 25 1 -0.3634 0.5123 -0.8909 26 1 1.5788 -1.7155 1.3201 27 1 1.8018 -0.1493 2.1417 28 1 3.2950 2.5036 1.9764 29 1 3.6213 1.8791 3.6110 30 1 4.6977 3.1022 2.8942 31 1 6.3107 0.6884 0.6318 32 1 5.8914 2.4145 0.7459 33 1 9.5046 2.4211 0.0336 34 1 5.1251 -1.3377 -0.1255 35 1 3.7762 -2.5011 -0.1782 36 1 3.8029 0.3397 -1.2994 37 1 3.7091 -1.1776 -2.2268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075657278.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:53 Heat of formation + Delta-G solvation = -115.746919 kcal Electronic energy + Delta-G solvation = -21460.553027 eV Core-core repulsion = 18172.100468 eV Total energy + Delta-G solvation = -3288.452559 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.29605 -36.74670 -35.53008 -35.22164 -34.65082 -32.90525 -32.46806 -28.52907 -27.80432 -25.83170 -25.06735 -23.10188 -22.29775 -20.90768 -18.57892 -17.48487 -16.82587 -16.56290 -16.38890 -15.85525 -15.27476 -14.89006 -14.77587 -14.29742 -14.05027 -13.48077 -13.31969 -12.84053 -12.47911 -12.33083 -12.21486 -12.13881 -11.85685 -11.80130 -11.61098 -11.29952 -11.22048 -11.19271 -11.10611 -10.75710 -10.60122 -10.39896 -10.18612 -10.02374 -9.79584 -8.70691 -8.47150 -8.10406 -6.09978 -4.14181 1.10116 3.31770 3.35149 3.35569 3.40519 3.71459 4.02340 4.42029 4.59260 4.85846 4.86834 5.02912 5.14154 5.19257 5.25182 5.32431 5.45906 5.54668 5.60016 5.60588 5.70294 5.82099 5.92080 5.93822 6.05541 6.16635 6.28153 6.46042 6.65043 7.15310 7.17035 7.34597 7.55136 7.87384 8.16207 8.87893 9.51333 10.98568 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026412 B = 0.005982 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.874132 B = 4679.674732 C = 4954.632173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 H 0.065 0.935 4 C 0.096 3.904 5 N -1.016 6.016 6 S 2.779 3.221 7 O -0.959 6.959 8 O -0.994 6.994 9 N -0.996 5.996 10 C 0.096 3.904 11 C 0.258 3.742 12 C -0.531 4.531 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.896 5.896 16 Si 0.897 3.103 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.089 3.911 21 C 0.050 3.950 22 O -0.379 6.379 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.265 0.735 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.538 -3.204 -2.722 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 H 0.083 0.917 4 C -0.030 4.030 5 N -0.854 5.854 6 S 2.788 3.212 7 O -0.943 6.943 8 O -0.978 6.978 9 N -0.839 5.839 10 C -0.051 4.051 11 C 0.136 3.864 12 C -0.570 4.570 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.535 5.535 16 Si 0.725 3.275 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.037 4.037 21 C -0.029 4.029 22 O -0.298 6.298 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.213 -3.797 -2.272 14.886 hybrid contribution 1.025 0.569 0.387 1.234 sum -13.188 -3.228 -1.885 13.708 Atomic orbital electron populations 1.21740 0.92650 1.03042 1.02692 1.22542 0.95074 0.95559 0.85524 0.91696 1.22112 0.80293 1.01747 0.98863 1.58635 1.16326 1.77946 1.32506 1.02103 0.72606 0.73567 0.72880 1.93624 1.44643 1.70169 1.85828 1.93512 1.72201 1.87375 1.44756 1.57694 1.37184 1.22272 1.66745 1.21345 0.94179 0.92514 0.97070 1.19038 0.80076 0.97032 0.90207 1.21446 0.94089 1.47652 0.93803 0.92242 1.24922 0.98736 0.95064 0.95197 1.69899 1.24815 1.48111 1.10673 0.86567 0.81529 0.78828 0.80603 1.19966 1.21121 1.20164 1.22046 0.99994 0.97994 0.83663 1.22962 0.80876 1.00774 0.98246 1.87900 1.21240 1.77591 1.43033 0.91682 0.90816 0.91598 0.90745 0.88814 0.94458 0.91617 0.90303 0.94661 0.94784 0.92590 0.87921 0.90795 0.92096 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.57 37.16 0.36 -0.92 16 2 C 0.07 0.85 3.41 -26.36 -0.09 0.76 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.10 1.25 5.88 -3.32 -0.02 1.23 16 5 N -1.02 -16.10 3.39 -112.83 -0.38 -16.48 16 6 S 2.78 55.75 6.07 -107.50 -0.65 55.10 16 7 O -0.96 -22.90 15.91 -57.17 -0.91 -23.81 16 8 O -0.99 -20.66 15.53 -57.17 -0.89 -21.55 16 9 N -1.00 -20.52 3.23 -123.05 -0.40 -20.92 16 10 C 0.10 1.62 10.68 59.85 0.64 2.26 16 11 C 0.26 6.36 5.08 -5.20 -0.03 6.33 16 12 C -0.53 -14.78 9.38 -34.44 -0.32 -15.11 16 13 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 15 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 16 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.09 1.28 6.57 -3.53 -0.02 1.26 16 21 C 0.05 0.63 6.98 37.31 0.26 0.89 16 22 O -0.38 -5.00 10.38 -35.23 -0.37 -5.37 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.09 1.17 7.24 -51.93 -0.38 0.79 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 1.05 7.02 -51.93 -0.36 0.69 16 30 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.04 0.91 7.61 -51.93 -0.40 0.52 16 32 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.10 1.63 7.25 -51.93 -0.38 1.25 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -33.16 316.38 -8.14 -41.30 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.70 Total: -3.08 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 0.68 Total: -1.61 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.04 Total: -62.43 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -2.16 Total: -50.72 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 55.75 SS G_CDS: -0.65 Total: 55.10 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.16 -8.14 -41.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075657278.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.449 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds