Wall clock time and date at job start Tue Mar 31 2020 00:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.51035 * 2 1 4 4 C 1.53706 * 109.44288 * 120.28806 * 2 1 3 5 5 N 1.47147 * 108.16150 * 172.37414 * 4 2 1 6 6 S 1.65604 * 120.98332 * 129.43437 * 5 4 2 7 7 O 1.42101 * 106.40405 * 156.17844 * 6 5 4 8 8 O 1.42101 * 106.40196 * 23.25443 * 6 5 4 9 9 N 1.65599 * 107.21451 * 269.71594 * 6 5 4 10 10 C 1.46506 * 120.00145 * 90.00096 * 9 6 5 11 11 C 1.46496 * 120.00096 * 269.99597 * 9 6 5 12 12 C 1.50700 * 109.47432 * 264.99977 * 11 9 6 13 13 H 1.07999 * 119.99834 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00101 * 179.97438 * 12 11 9 15 15 N 1.31510 * 120.00089 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00051 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47043 * 60.00015 * 16 14 12 18 18 H 1.48500 * 109.47388 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46921 * 300.00350 * 16 14 12 20 20 C 1.47155 * 118.03779 * 309.15499 * 5 4 2 21 21 C 1.53293 * 108.37894 * 50.78743 * 20 5 4 22 22 O 1.42962 * 109.51065 * 239.89915 * 2 1 3 23 23 H 1.09005 * 109.47445 * 180.09706 * 1 2 3 24 24 H 1.08999 * 109.47452 * 300.10569 * 1 2 3 25 25 H 1.09004 * 109.47373 * 60.10010 * 1 2 3 26 26 H 1.09000 * 109.84225 * 52.69381 * 4 2 1 27 27 H 1.09005 * 109.74742 * 292.00294 * 4 2 1 28 28 H 1.09001 * 109.47060 * 270.00189 * 10 9 6 29 29 H 1.09004 * 109.47073 * 29.99678 * 10 9 6 30 30 H 1.09000 * 109.47212 * 149.99761 * 10 9 6 31 31 H 1.08995 * 109.47319 * 25.00406 * 11 9 6 32 32 H 1.09007 * 109.47165 * 145.00156 * 11 9 6 33 33 H 0.97001 * 120.00107 * 179.97438 * 15 14 12 34 34 H 1.08995 * 109.68551 * 170.51320 * 20 5 4 35 35 H 1.08997 * 109.68318 * 291.02813 * 20 5 4 36 36 H 1.08994 * 109.51697 * 67.62541 * 21 20 5 37 37 H 1.09004 * 109.50891 * 187.77178 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0416 -0.7310 1.2516 5 7 3.5011 -0.8767 1.1331 6 16 4.5064 -0.4203 2.3675 7 8 5.7050 -1.1662 2.2055 8 8 3.7251 -0.4525 3.5540 9 7 4.9053 1.1667 2.1132 10 6 4.0768 2.2310 2.6853 11 6 6.0867 1.5064 1.3164 12 6 7.2624 1.7316 2.2319 13 1 7.1418 1.6312 3.3004 14 6 8.4924 2.0646 1.7053 15 7 8.6394 2.1864 0.4041 16 14 9.9499 2.3430 2.8400 17 1 10.2155 1.1057 3.6171 18 1 11.1474 2.6875 2.0322 19 1 9.6451 3.4576 3.7728 20 6 4.0406 -1.4458 -0.1121 21 6 3.4312 -0.6849 -1.2951 22 8 2.0075 -0.6758 -1.1658 23 1 -0.3634 -1.0277 0.0017 24 1 -0.3634 0.5155 0.8890 25 1 -0.3634 0.5123 -0.8909 26 1 1.5788 -1.7155 1.3201 27 1 1.8018 -0.1493 2.1417 28 1 3.2950 2.5036 1.9764 29 1 3.6213 1.8791 3.6110 30 1 4.6977 3.1022 2.8942 31 1 6.3107 0.6884 0.6318 32 1 5.8914 2.4145 0.7459 33 1 9.5046 2.4211 0.0336 34 1 5.1251 -1.3377 -0.1255 35 1 3.7762 -2.5011 -0.1782 36 1 3.8029 0.3397 -1.2994 37 1 3.7091 -1.1776 -2.2268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075657278.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:52 Heat of formation + Delta-G solvation = -140.765924 kcal Electronic energy + Delta-G solvation = -21461.637932 eV Core-core repulsion = 18172.100468 eV Total energy + Delta-G solvation = -3289.537464 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.33609 -38.42448 -37.25300 -36.92155 -35.82450 -34.52612 -33.83550 -29.72916 -29.48519 -27.00218 -26.65832 -24.33870 -23.99949 -21.94970 -20.01262 -19.10489 -18.48180 -18.32057 -17.68522 -17.21683 -16.63315 -16.35135 -15.92663 -15.71839 -15.27295 -15.11347 -14.94236 -14.09749 -13.99483 -13.81387 -13.44022 -13.33901 -13.26794 -13.11638 -13.07361 -12.97065 -12.75156 -12.70212 -12.50867 -12.42969 -12.13813 -12.02833 -11.79899 -11.44193 -11.26819 -10.60796 -9.85915 -9.81311 -8.22353 -6.34339 -0.45863 1.38499 1.41687 1.48883 1.91061 2.37474 2.50053 2.78095 3.08595 3.26097 3.67196 3.75239 4.02767 4.10212 4.13781 4.18357 4.33048 4.41980 4.60629 4.66012 4.72500 4.77741 4.84505 4.90459 4.97586 5.03718 5.12820 5.15376 5.31904 5.37838 5.50211 5.67562 5.90599 6.08147 6.18622 6.73122 7.34636 8.84927 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026412 B = 0.005982 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.874132 B = 4679.674732 C = 4954.632173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.069 3.931 3 H 0.061 0.939 4 C 0.088 3.912 5 N -1.010 6.010 6 S 2.792 3.208 7 O -1.004 7.004 8 O -1.003 7.003 9 N -1.004 6.004 10 C 0.089 3.911 11 C 0.275 3.725 12 C -0.553 4.553 13 H 0.050 0.950 14 C 0.015 3.985 15 N -0.922 5.922 16 Si 0.955 3.045 17 H -0.278 1.278 18 H -0.275 1.275 19 H -0.264 1.264 20 C 0.083 3.917 21 C 0.054 3.946 22 O -0.384 6.384 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.017 0.983 32 H 0.027 0.973 33 H 0.268 0.732 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.902 -3.028 -2.728 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.010 3.990 3 H 0.080 0.920 4 C -0.036 4.036 5 N -0.852 5.852 6 S 2.802 3.198 7 O -0.988 6.988 8 O -0.987 6.987 9 N -0.845 5.845 10 C -0.057 4.057 11 C 0.151 3.849 12 C -0.592 4.592 13 H 0.068 0.932 14 C -0.185 4.185 15 N -0.561 5.561 16 Si 0.779 3.221 17 H -0.204 1.204 18 H -0.200 1.200 19 H -0.189 1.189 20 C -0.042 4.042 21 C -0.024 4.024 22 O -0.303 6.303 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.119 0.881 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.602 -3.604 -2.259 16.171 hybrid contribution 1.351 0.480 0.373 1.481 sum -14.251 -3.123 -1.886 14.711 Atomic orbital electron populations 1.21756 0.90153 1.03791 1.03899 1.22710 0.96943 0.94961 0.84402 0.92049 1.22447 0.78124 1.03083 0.99996 1.58284 1.17318 1.77532 1.32019 1.01462 0.72091 0.73068 0.73178 1.93560 1.47349 1.71280 1.86627 1.93488 1.72051 1.87406 1.45788 1.57593 1.36832 1.23425 1.66674 1.21572 0.94384 0.91324 0.98374 1.18593 0.80773 0.95836 0.89695 1.21792 0.95687 1.47866 0.93848 0.93182 1.25707 1.01301 0.94811 0.96656 1.69984 1.25598 1.48584 1.11968 0.85664 0.78637 0.78753 0.79011 1.20381 1.19982 1.18887 1.22213 0.99044 0.99342 0.83598 1.22971 0.80851 1.00133 0.98444 1.87909 1.21018 1.77730 1.43611 0.91171 0.88946 0.91091 0.89213 0.88100 0.91062 0.90616 0.91028 0.96503 0.95454 0.92282 0.89974 0.88914 0.93240 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.57 71.98 0.69 -1.35 16 2 C 0.07 1.47 3.41 30.83 0.11 1.58 16 3 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 4 C 0.09 2.11 5.88 86.49 0.51 2.62 16 5 N -1.01 -31.15 3.39 -510.88 -1.73 -32.88 16 6 S 2.79 112.12 6.07 -56.49 -0.34 111.77 16 7 O -1.00 -49.20 15.91 -128.00 -2.04 -51.23 16 8 O -1.00 -40.94 15.53 -128.00 -1.99 -42.93 16 9 N -1.00 -41.41 3.23 -543.21 -1.75 -43.17 16 10 C 0.09 2.91 10.68 127.77 1.36 4.28 16 11 C 0.27 13.80 5.08 85.63 0.43 14.23 16 12 C -0.55 -31.28 9.38 25.60 0.24 -31.04 16 13 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 14 C 0.02 0.85 5.46 84.66 0.46 1.32 16 15 N -0.92 -53.47 13.29 21.45 0.28 -53.18 16 16 Si 0.95 44.45 29.54 68.60 2.03 46.47 16 17 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 20 C 0.08 2.36 6.57 86.35 0.57 2.93 16 21 C 0.05 1.32 6.98 72.08 0.50 1.82 16 22 O -0.38 -9.30 10.38 -148.98 -1.55 -10.85 16 23 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.10 2.27 7.24 -2.38 -0.02 2.25 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 2.32 7.02 -2.38 -0.02 2.30 16 30 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 31 H 0.02 0.91 7.61 -2.39 -0.02 0.89 16 32 H 0.03 1.39 8.11 -2.38 -0.02 1.38 16 33 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 34 H 0.08 2.68 7.25 -2.39 -0.02 2.66 16 35 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.13 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -70.75 316.38 -1.17 -71.92 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.04 Total: 7.69 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 4.87 Total: -3.61 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -3.20 Total: -129.23 kcal Atomic # 8 Polarization: -99.44 SS G_CDS: -5.57 Total: -105.01 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: 112.12 SS G_CDS: -0.34 Total: 111.77 kcal Total: -70.75 -1.17 -71.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075657278.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.851 kcal (2) G-P(sol) polarization free energy of solvation -70.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds