Wall clock time and date at job start Tue Mar 31 2020 01:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47274 * 2 1 4 4 C 1.33330 * 120.00489 * 263.99828 * 3 2 1 5 5 H 1.07997 * 120.00274 * 143.13755 * 4 3 2 6 6 C 1.46790 * 119.99576 * 323.14576 * 4 3 2 7 7 N 1.29311 * 119.99776 * 160.21382 * 6 4 3 8 8 Si 1.86798 * 119.99936 * 340.21009 * 6 4 3 9 9 H 1.48502 * 109.46845 * 90.40998 * 8 6 4 10 10 H 1.48495 * 109.47021 * 210.40365 * 8 6 4 11 11 H 1.48497 * 109.47361 * 330.40846 * 8 6 4 12 12 C 1.34773 * 119.99970 * 83.99246 * 3 2 1 13 13 O 1.21472 * 120.00139 * 184.40804 * 12 3 2 14 14 C 1.47699 * 120.00022 * 4.40938 * 12 3 2 15 15 C 1.39684 * 120.14933 * 59.13231 * 14 12 3 16 16 C 1.37915 * 119.84345 * 179.76502 * 15 14 12 17 17 C 1.50700 * 119.92760 * 180.25452 * 16 15 14 18 18 C 1.38403 * 120.15108 * 0.49342 * 16 15 14 19 19 C 1.38359 * 120.30847 * 359.75778 * 18 16 15 20 20 C 1.37945 * 120.15302 * 0.02562 * 19 18 16 21 21 N 1.48022 * 120.07853 * 179.97438 * 20 19 18 22 22 O 1.31707 * 119.99734 * 4.98533 * 21 20 19 23 23 O 1.31697 * 120.00439 * 184.98869 * 21 20 19 24 24 H 1.09001 * 109.46966 * 60.00327 * 1 2 3 25 25 H 1.09007 * 109.46819 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47119 * 299.99732 * 1 2 3 27 27 H 1.09003 * 109.47371 * 240.00176 * 2 1 3 28 28 H 1.09002 * 109.47364 * 120.00035 * 2 1 3 29 29 H 0.97001 * 119.99862 * 179.97438 * 7 6 4 30 30 H 1.07993 * 120.08411 * 359.97438 * 15 14 12 31 31 H 1.09003 * 109.47218 * 270.24077 * 17 16 15 32 32 H 1.09008 * 109.46582 * 30.23259 * 17 16 15 33 33 H 1.08994 * 109.47675 * 150.23451 * 17 16 15 34 34 H 1.08003 * 119.84760 * 179.74827 * 18 16 15 35 35 H 1.08000 * 119.92116 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3544 1.9695 -1.1483 5 1 2.1436 3.0178 -1.2999 6 6 3.0108 1.1923 -2.2065 7 7 2.9958 1.6200 -3.4267 8 14 3.8679 -0.4144 -1.7903 9 1 2.9044 -1.5371 -1.9187 10 1 5.0025 -0.6266 -2.7246 11 1 4.3781 -0.3568 -0.3969 12 6 2.1278 2.0572 1.1608 13 8 2.4559 3.2268 1.1539 14 6 1.8489 1.3760 2.4413 15 6 2.5869 0.2495 2.8119 16 6 2.3244 -0.3788 4.0113 17 6 3.1234 -1.5909 4.4157 18 6 1.3256 0.0984 4.8421 19 6 0.5873 1.2106 4.4787 20 6 0.8421 1.8515 3.2841 21 7 0.0508 3.0409 2.8967 22 8 -0.8299 3.5474 3.7349 23 8 0.2272 3.5927 1.7140 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.4299 1.1066 -4.1260 30 1 3.3635 -0.1267 2.1625 31 1 2.6338 -2.4902 4.0416 32 1 4.1266 -1.5217 3.9949 33 1 3.1877 -1.6377 5.5027 34 1 1.1215 -0.3999 5.7783 35 1 -0.1910 1.5774 5.1316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088147370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:03 Heat of formation + Delta-G solvation = 40.755356 kcal Electronic energy + Delta-G solvation = -22434.420430 eV Core-core repulsion = 19017.310367 eV Total energy + Delta-G solvation = -3417.110062 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.49122 -38.39574 -37.86335 -35.28448 -33.74862 -33.16437 -32.71254 -31.38926 -29.99486 -28.42652 -25.69237 -24.75151 -23.52701 -22.84199 -21.65153 -19.45816 -18.12411 -17.47983 -17.13172 -16.56764 -15.89828 -15.55946 -15.36817 -14.85735 -14.47443 -14.22793 -13.93799 -13.81202 -13.36100 -12.83519 -12.65758 -12.58519 -12.42861 -12.22523 -11.95443 -11.72614 -11.65361 -11.13507 -10.96355 -10.73456 -10.37365 -10.27036 -10.06132 -10.01463 -9.33775 -9.23618 -9.15495 -8.62023 -8.00488 -6.72682 -3.88151 -0.34811 0.86571 1.32587 1.64168 2.80673 2.97780 3.02144 3.15894 3.65002 3.88079 4.10324 4.38924 4.46980 4.62791 4.72707 4.87046 4.94195 5.21350 5.27216 5.31004 5.40903 5.60278 5.61181 5.71705 5.74047 5.83076 5.90650 6.08068 6.14659 6.18469 6.28283 6.51354 6.65162 7.08552 7.33205 8.14332 8.29884 8.78022 9.16418 9.74606 10.34701 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017451 B = 0.008142 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.147504 B = 3437.959241 C = 4463.932053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.067 3.933 3 N -0.410 5.410 4 C -0.337 4.337 5 H 0.114 0.886 6 C 0.067 3.933 7 N -0.810 5.810 8 Si 0.880 3.120 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.259 1.259 12 C 0.469 3.531 13 O -0.533 6.533 14 C -0.019 4.019 15 C -0.106 4.106 16 C -0.040 4.040 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.054 4.054 20 C 0.011 3.989 21 N -0.026 5.026 22 O -0.230 6.230 23 O -0.102 6.102 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.285 0.715 30 H 0.148 0.852 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.144 0.856 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.671 -12.326 12.890 17.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.056 4.056 3 N -0.128 5.128 4 C -0.466 4.466 5 H 0.131 0.869 6 C -0.149 4.149 7 N -0.441 5.441 8 Si 0.706 3.294 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.183 1.183 12 C 0.258 3.742 13 O -0.414 6.414 14 C -0.025 4.025 15 C -0.125 4.125 16 C -0.040 4.040 17 C -0.177 4.177 18 C -0.144 4.144 19 C -0.073 4.073 20 C -0.077 4.077 21 N 0.448 4.552 22 O -0.405 6.405 23 O -0.308 6.308 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.165 0.835 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.162 0.838 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.205 -12.217 12.937 17.795 hybrid contribution 0.105 -0.495 -0.076 0.511 sum -0.100 -12.712 12.860 18.083 Atomic orbital electron populations 1.22071 0.95938 1.00978 1.02682 1.22185 0.95187 0.86379 1.01814 1.42380 1.53458 1.11248 1.05687 1.20044 1.38816 0.98099 0.89679 0.86881 1.27068 0.95333 0.98144 0.94368 1.68702 1.35568 1.39001 1.00838 0.86973 0.79792 0.82528 0.80133 1.19492 1.20779 1.18296 1.17627 0.86400 0.88183 0.81990 1.90690 1.50799 1.14921 1.84957 1.20562 0.91395 0.93062 0.97469 1.21284 1.00484 0.93826 0.96896 1.20258 0.94695 0.96130 0.92959 1.20928 0.99717 0.94648 1.02431 1.21040 0.96222 0.96295 1.00845 1.20971 0.98994 0.93983 0.93376 1.20325 0.97839 0.90726 0.98838 1.50322 1.00304 1.01895 1.02656 1.96182 1.29823 1.67348 1.47156 1.96446 1.70751 1.61854 1.01753 0.91032 0.92509 0.93779 0.90354 0.91817 0.90264 0.83465 0.89981 0.90565 0.90632 0.83791 0.83018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 10.18 37.16 0.38 -2.45 16 2 C 0.07 1.32 4.49 -4.04 -0.02 1.30 16 3 N -0.41 -9.89 2.20 -114.38 -0.25 -10.15 16 4 C -0.34 -9.28 9.63 -13.45 -0.13 -9.41 16 5 H 0.11 3.58 7.80 -52.49 -0.41 3.17 16 6 C 0.07 1.72 5.48 -15.16 -0.08 1.64 16 7 N -0.81 -21.62 13.88 56.00 0.78 -20.84 16 8 Si 0.88 18.50 25.19 -169.99 -4.28 14.22 16 9 H -0.27 -5.18 6.58 56.52 0.37 -4.81 16 10 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 12 C 0.47 11.44 5.38 -12.40 -0.07 11.38 16 13 O -0.53 -15.25 14.73 -18.48 -0.27 -15.52 16 14 C -0.02 -0.37 4.57 -104.97 -0.48 -0.85 16 15 C -0.11 -1.57 7.33 -39.16 -0.29 -1.86 16 16 C -0.04 -0.44 5.87 -104.68 -0.61 -1.05 16 17 C -0.12 -0.86 10.01 36.01 0.36 -0.50 16 18 C -0.13 -1.29 9.69 -39.48 -0.38 -1.68 16 19 C -0.05 -0.74 9.57 -39.64 -0.38 -1.12 16 20 C 0.01 0.20 6.90 -79.53 -0.55 -0.35 16 21 N -0.03 -0.58 4.98 34.17 0.17 -0.41 16 22 O -0.23 -4.89 19.17 -31.57 -0.61 -5.49 16 23 O -0.10 -2.64 15.70 -39.77 -0.62 -3.26 16 24 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.80 7.86 -51.93 -0.41 0.40 16 27 H 0.08 1.57 3.23 -51.93 -0.17 1.40 16 28 H 0.06 1.06 4.88 -51.93 -0.25 0.81 16 29 H 0.29 6.86 8.26 -40.82 -0.34 6.53 16 30 H 0.15 2.09 7.58 -52.49 -0.40 1.70 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.53 8.09 -51.92 -0.42 0.11 16 33 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.15 1.80 7.58 -52.49 -0.40 1.40 16 LS Contribution 301.61 15.07 4.55 4.55 Total: -1.00 -33.06 301.61 -6.52 -39.58 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -3.73 Total: 2.28 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.25 Total: -4.96 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.70 Total: -31.40 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -1.50 Total: -24.28 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -4.28 Total: 14.22 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.06 -6.52 -39.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088147370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.340 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds