Wall clock time and date at job start Tue Mar 31 2020 01:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47274 * 2 1 4 4 C 1.33330 * 120.00489 * 263.99828 * 3 2 1 5 5 H 1.07997 * 120.00274 * 143.13755 * 4 3 2 6 6 C 1.46790 * 119.99576 * 323.14576 * 4 3 2 7 7 N 1.29311 * 119.99776 * 160.21382 * 6 4 3 8 8 Si 1.86798 * 119.99936 * 340.21009 * 6 4 3 9 9 H 1.48502 * 109.46845 * 90.40998 * 8 6 4 10 10 H 1.48495 * 109.47021 * 210.40365 * 8 6 4 11 11 H 1.48497 * 109.47361 * 330.40846 * 8 6 4 12 12 C 1.34773 * 119.99970 * 83.99246 * 3 2 1 13 13 O 1.21472 * 120.00139 * 184.40804 * 12 3 2 14 14 C 1.47699 * 120.00022 * 4.40938 * 12 3 2 15 15 C 1.39684 * 120.14933 * 59.13231 * 14 12 3 16 16 C 1.37915 * 119.84345 * 179.76502 * 15 14 12 17 17 C 1.50700 * 119.92760 * 180.25452 * 16 15 14 18 18 C 1.38403 * 120.15108 * 0.49342 * 16 15 14 19 19 C 1.38359 * 120.30847 * 359.75778 * 18 16 15 20 20 C 1.37945 * 120.15302 * 0.02562 * 19 18 16 21 21 N 1.48022 * 120.07853 * 179.97438 * 20 19 18 22 22 O 1.31707 * 119.99734 * 4.98533 * 21 20 19 23 23 O 1.31697 * 120.00439 * 184.98869 * 21 20 19 24 24 H 1.09001 * 109.46966 * 60.00327 * 1 2 3 25 25 H 1.09007 * 109.46819 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47119 * 299.99732 * 1 2 3 27 27 H 1.09003 * 109.47371 * 240.00176 * 2 1 3 28 28 H 1.09002 * 109.47364 * 120.00035 * 2 1 3 29 29 H 0.97001 * 119.99862 * 179.97438 * 7 6 4 30 30 H 1.07993 * 120.08411 * 359.97438 * 15 14 12 31 31 H 1.09003 * 109.47218 * 270.24077 * 17 16 15 32 32 H 1.09008 * 109.46582 * 30.23259 * 17 16 15 33 33 H 1.08994 * 109.47675 * 150.23451 * 17 16 15 34 34 H 1.08003 * 119.84760 * 179.74827 * 18 16 15 35 35 H 1.08000 * 119.92116 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3544 1.9695 -1.1483 5 1 2.1436 3.0178 -1.2999 6 6 3.0108 1.1923 -2.2065 7 7 2.9958 1.6200 -3.4267 8 14 3.8679 -0.4144 -1.7903 9 1 2.9044 -1.5371 -1.9187 10 1 5.0025 -0.6266 -2.7246 11 1 4.3781 -0.3568 -0.3969 12 6 2.1278 2.0572 1.1608 13 8 2.4559 3.2268 1.1539 14 6 1.8489 1.3760 2.4413 15 6 2.5869 0.2495 2.8119 16 6 2.3244 -0.3788 4.0113 17 6 3.1234 -1.5909 4.4157 18 6 1.3256 0.0984 4.8421 19 6 0.5873 1.2106 4.4787 20 6 0.8421 1.8515 3.2841 21 7 0.0508 3.0409 2.8967 22 8 -0.8299 3.5474 3.7349 23 8 0.2272 3.5927 1.7140 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.4299 1.1066 -4.1260 30 1 3.3635 -0.1267 2.1625 31 1 2.6338 -2.4902 4.0416 32 1 4.1266 -1.5217 3.9949 33 1 3.1877 -1.6377 5.5027 34 1 1.1215 -0.3999 5.7783 35 1 -0.1910 1.5774 5.1316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088147370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:02 Heat of formation + Delta-G solvation = 17.301163 kcal Electronic energy + Delta-G solvation = -22435.437480 eV Core-core repulsion = 19017.310367 eV Total energy + Delta-G solvation = -3418.127112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.91425 -40.08522 -39.35460 -37.14905 -35.47224 -34.65015 -34.24690 -32.68023 -31.62014 -29.59033 -27.33055 -26.14269 -24.98550 -24.29590 -23.00500 -21.05577 -19.70074 -19.08564 -18.88646 -18.14649 -17.63337 -17.04559 -16.82665 -16.11111 -15.79492 -15.62924 -15.42849 -15.01904 -14.74767 -14.42553 -14.40793 -13.93829 -13.38410 -13.29051 -13.12008 -13.05638 -12.83202 -12.68499 -12.59045 -12.48056 -12.06719 -12.00189 -11.80692 -11.71639 -11.13750 -10.62756 -10.36213 -10.25090 -9.88474 -8.66104 -5.99722 -1.90104 -0.27323 -0.00604 0.13154 1.14454 1.25400 1.40924 1.77923 2.10353 2.17477 2.51641 2.76439 3.25157 3.42053 3.57745 3.73810 3.78198 3.88101 3.99101 4.21300 4.31093 4.40175 4.57805 4.62135 4.72577 4.73981 4.74968 4.82574 4.90847 5.13259 5.19986 5.22101 5.26860 5.51250 5.59240 6.08032 6.33777 6.89221 7.23342 7.88950 8.48063 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017451 B = 0.008142 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.147504 B = 3437.959241 C = 4463.932053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 N -0.424 5.424 4 C -0.389 4.389 5 H 0.030 0.970 6 C 0.022 3.978 7 N -0.867 5.867 8 Si 0.953 3.047 9 H -0.226 1.226 10 H -0.276 1.276 11 H -0.243 1.243 12 C 0.469 3.531 13 O -0.597 6.597 14 C -0.044 4.044 15 C -0.113 4.113 16 C 0.000 4.000 17 C -0.124 4.124 18 C -0.093 4.093 19 C -0.039 4.039 20 C -0.022 4.022 21 N -0.017 5.017 22 O -0.156 6.156 23 O -0.244 6.244 24 H 0.037 0.963 25 H 0.106 0.894 26 H 0.032 0.968 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.294 0.706 30 H 0.155 0.845 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.208 0.792 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 -18.720 18.871 26.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.056 4.056 3 N -0.141 5.141 4 C -0.518 4.518 5 H 0.048 0.952 6 C -0.189 4.189 7 N -0.499 5.499 8 Si 0.773 3.227 9 H -0.150 1.150 10 H -0.202 1.202 11 H -0.167 1.167 12 C 0.259 3.741 13 O -0.482 6.482 14 C -0.049 4.049 15 C -0.133 4.133 16 C -0.001 4.001 17 C -0.180 4.180 18 C -0.111 4.111 19 C -0.058 4.058 20 C -0.110 4.110 21 N 0.453 4.547 22 O -0.360 6.360 23 O -0.417 6.417 24 H 0.057 0.943 25 H 0.124 0.876 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.172 0.828 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.225 0.775 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.095 -18.614 18.590 26.307 hybrid contribution -0.151 1.431 -1.253 1.908 sum -0.056 -17.183 17.337 24.410 Atomic orbital electron populations 1.22031 0.95098 1.03300 1.00601 1.22407 0.96037 0.83773 1.03410 1.42342 1.54491 1.13001 1.04277 1.19323 1.44035 0.95820 0.92628 0.95206 1.27981 0.94695 1.02988 0.93247 1.68812 1.37018 1.41824 1.02206 0.85849 0.78890 0.77493 0.80502 1.15043 1.20220 1.16659 1.18495 0.84017 0.87512 0.84038 1.90616 1.53011 1.17942 1.86655 1.20234 0.94227 0.95643 0.94835 1.21522 1.00061 0.92524 0.99149 1.20871 0.93388 0.95741 0.90119 1.21175 0.99235 0.92803 1.04743 1.21820 0.93382 0.93814 1.02106 1.21540 0.99500 0.94007 0.90760 1.20838 0.98964 0.90203 1.01011 1.50928 0.99459 1.02342 1.01924 1.96088 1.27901 1.66138 1.45899 1.96537 1.75395 1.65941 1.03816 0.94341 0.87572 0.94834 0.90497 0.87907 0.89433 0.82791 0.87332 0.90156 0.87286 0.77484 0.80291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 10.18 71.98 0.73 -4.76 16 2 C 0.07 2.56 4.49 86.38 0.39 2.94 16 3 N -0.42 -22.22 2.20 -634.11 -1.39 -23.61 16 4 C -0.39 -24.33 9.63 86.70 0.84 -23.49 16 5 H 0.03 2.27 7.80 -2.91 -0.02 2.25 16 6 C 0.02 1.23 5.48 87.30 0.48 1.71 16 7 N -0.87 -50.71 13.88 23.26 0.32 -50.39 16 8 Si 0.95 38.42 25.19 68.60 1.73 40.15 16 9 H -0.23 -7.62 6.58 99.48 0.65 -6.96 16 10 H -0.28 -10.81 7.11 99.48 0.71 -10.11 16 11 H -0.24 -9.10 7.11 99.48 0.71 -8.39 16 12 C 0.47 24.97 5.38 86.74 0.47 25.43 16 13 O -0.60 -38.80 14.73 19.19 0.28 -38.51 16 14 C -0.04 -1.70 4.57 -20.09 -0.09 -1.79 16 15 C -0.11 -2.92 7.33 22.54 0.17 -2.75 16 16 C 0.00 -0.01 5.87 -19.90 -0.12 -0.12 16 17 C -0.12 -0.61 10.01 71.24 0.71 0.10 16 18 C -0.09 -1.09 9.69 22.34 0.22 -0.88 16 19 C -0.04 -0.83 9.57 22.23 0.21 -0.62 16 20 C -0.02 -0.80 6.90 36.64 0.25 -0.54 16 21 N -0.02 -0.80 4.98 -45.82 -0.23 -1.02 16 22 O -0.16 -6.41 19.17 3.50 0.07 -6.34 16 23 O -0.24 -14.18 15.70 11.37 0.18 -14.00 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 26 H 0.03 1.25 7.86 -2.39 -0.02 1.23 16 27 H 0.08 2.99 3.23 -2.39 -0.01 2.98 16 28 H 0.10 3.12 4.88 -2.39 -0.01 3.11 16 29 H 0.29 15.21 8.26 -92.71 -0.77 14.44 16 30 H 0.15 3.76 7.58 -2.91 -0.02 3.74 16 31 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.08 0.47 8.09 -2.38 -0.02 0.45 16 33 H 0.11 -0.01 8.08 -2.39 -0.02 -0.03 16 34 H 0.21 0.15 8.06 -2.91 -0.02 0.13 16 35 H 0.18 2.94 7.58 -2.91 -0.02 2.91 16 Total: -1.00 -94.56 301.61 6.29 -88.28 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.08 Total: 10.23 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 4.25 Total: -4.77 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -1.30 Total: -75.03 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: 0.53 Total: -58.86 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 1.73 Total: 40.15 kcal Total: -94.56 6.29 -88.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088147370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.577 kcal (2) G-P(sol) polarization free energy of solvation -94.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds