Wall clock time and date at job start Tue Mar 31 2020 01:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34708 * 117.00432 * 2 1 4 4 O 1.21470 * 119.99501 * 359.97438 * 3 2 1 5 5 C 1.47734 * 120.00119 * 180.02562 * 3 2 1 6 6 C 1.39726 * 120.49504 * 0.02562 * 5 3 2 7 7 N 1.31722 * 120.87091 * 179.97438 * 6 5 3 8 8 C 1.31764 * 122.04869 * 359.75732 * 7 6 5 9 9 C 1.39639 * 120.89404 * 0.50934 * 8 7 6 10 10 C 1.47858 * 120.49344 * 179.76616 * 9 8 7 11 11 O 1.21552 * 120.00191 * 179.71589 * 10 9 8 12 12 N 1.34777 * 119.99596 * 359.72038 * 10 9 8 13 13 C 1.46497 * 120.00015 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.46733 * 325.00143 * 13 12 10 15 15 C 1.53000 * 109.47145 * 84.99707 * 13 12 10 16 16 C 1.50694 * 109.47115 * 204.99781 * 13 12 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.39761 * 119.02296 * 359.49008 * 9 8 7 25 25 H 1.08993 * 109.46747 * 59.99885 * 1 2 3 26 26 H 1.08992 * 109.47357 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46267 * 300.00110 * 1 2 3 28 28 H 1.07992 * 119.56511 * 359.96881 * 6 5 3 29 29 H 1.08003 * 119.55747 * 180.26796 * 8 7 6 30 30 H 0.97005 * 120.00104 * 359.97438 * 12 10 9 31 31 H 1.08997 * 109.47359 * 180.02562 * 15 13 12 32 32 H 1.09007 * 109.47356 * 300.00099 * 15 13 12 33 33 H 1.09000 * 109.47156 * 59.99824 * 15 13 12 34 34 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 35 35 H 1.07999 * 120.92490 * 180.23577 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2189 -0.0005 5 6 3.5390 1.2774 -0.0006 6 6 4.3100 0.1122 -0.0017 7 7 5.6259 0.1724 -0.0027 8 6 6.2733 1.3200 -0.0075 9 6 5.5819 2.5333 -0.0010 10 6 6.3174 3.8160 -0.0013 11 8 5.7065 4.8668 -0.0009 12 7 7.6651 3.8199 -0.0020 13 6 8.3939 5.0907 -0.0017 14 1 7.8440 5.8250 -0.5904 15 6 8.5394 5.5949 1.4355 16 6 9.7605 4.8862 -0.6030 17 1 10.0568 3.9074 -0.9503 18 6 10.6331 5.9485 -0.7089 19 7 10.2726 7.1403 -0.2855 20 14 12.3274 5.6948 -1.4535 21 1 13.2898 5.3324 -0.3823 22 1 12.2685 4.6015 -2.4568 23 1 12.7707 6.9490 -2.1136 24 6 4.1844 2.5173 -0.0003 25 1 -0.3632 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 3.8207 -0.8505 -0.0016 29 1 7.3533 1.3225 -0.0125 30 1 8.1526 2.9812 -0.0021 31 1 9.0812 6.5406 1.4357 32 1 7.5508 5.7428 1.8705 33 1 9.0891 4.8605 2.0243 34 1 10.8866 7.8876 -0.3597 35 1 3.6188 3.4374 0.0008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091243461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:00 Heat of formation + Delta-G solvation = -108.070155 kcal Electronic energy + Delta-G solvation = -20602.449486 eV Core-core repulsion = 17178.885865 eV Total energy + Delta-G solvation = -3423.563621 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.12480 -41.15273 -39.98099 -37.64606 -36.82891 -34.54643 -33.89029 -33.18301 -30.71984 -28.76936 -27.34967 -26.15015 -25.45504 -23.30116 -22.55038 -21.33837 -19.93726 -18.81552 -18.34987 -17.88250 -17.56488 -17.51890 -17.23213 -16.60663 -16.17173 -16.01819 -15.13750 -14.94054 -14.67323 -14.49594 -14.37480 -14.22837 -13.74136 -13.67918 -13.08515 -13.02174 -12.88534 -12.72715 -12.29240 -12.14834 -12.08535 -11.87002 -11.30847 -11.27099 -11.10574 -10.68877 -10.59318 -10.54902 -9.85198 -8.17371 -6.35031 -0.83315 -0.38719 1.20113 1.43803 1.47576 1.48320 1.58635 1.85787 2.24554 2.48682 2.64806 3.07916 3.13866 3.38182 3.52765 3.56079 3.81445 3.88981 4.24011 4.33599 4.35623 4.68116 4.72184 4.74808 4.80484 4.91462 5.07311 5.14629 5.19188 5.39695 5.55091 5.65822 5.86370 6.07583 6.45247 6.54923 6.70811 6.80592 7.26480 7.41978 8.89130 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.039268 B = 0.003373 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.885765 B = 8298.896548 C = 8755.095008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.345 6.345 3 C 0.523 3.477 4 O -0.532 6.532 5 C -0.192 4.192 6 C 0.197 3.803 7 N -0.492 5.492 8 C 0.183 3.817 9 C -0.197 4.197 10 C 0.548 3.452 11 O -0.591 6.591 12 N -0.691 5.691 13 C 0.270 3.730 14 H 0.002 0.998 15 C -0.136 4.136 16 C -0.547 4.547 17 H 0.079 0.921 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.973 3.027 21 H -0.271 1.271 22 H -0.262 1.262 23 H -0.289 1.289 24 C 0.035 3.965 25 H 0.063 0.937 26 H 0.142 0.858 27 H 0.063 0.937 28 H 0.213 0.787 29 H 0.193 0.807 30 H 0.407 0.593 31 H 0.068 0.932 32 H 0.012 0.988 33 H 0.045 0.955 34 H 0.265 0.735 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.894 -19.383 0.976 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.261 6.261 3 C 0.368 3.632 4 O -0.423 6.423 5 C -0.195 4.195 6 C 0.039 3.961 7 N -0.200 5.200 8 C 0.026 3.974 9 C -0.202 4.202 10 C 0.334 3.666 11 O -0.473 6.473 12 N -0.340 5.340 13 C 0.167 3.833 14 H 0.020 0.980 15 C -0.195 4.195 16 C -0.585 4.585 17 H 0.097 0.903 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.798 3.202 21 H -0.196 1.196 22 H -0.186 1.186 23 H -0.215 1.215 24 C 0.009 3.991 25 H 0.081 0.919 26 H 0.160 0.840 27 H 0.082 0.918 28 H 0.230 0.770 29 H 0.209 0.791 30 H 0.244 0.756 31 H 0.087 0.913 32 H 0.031 0.969 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.962 -18.942 0.992 22.974 hybrid contribution 0.203 1.387 -0.279 1.429 sum -12.760 -17.555 0.713 21.714 Atomic orbital electron populations 1.23674 0.73659 1.06340 1.02741 1.86502 1.25602 1.30380 1.83619 1.20810 0.88332 0.81998 0.72107 1.90876 1.67156 1.37309 1.46951 1.20044 0.91091 0.95366 1.12999 1.23962 0.88671 0.98698 0.84794 1.68001 1.09962 1.27765 1.14249 1.23680 1.02072 0.85599 0.86050 1.20871 0.94401 0.95002 1.09924 1.18426 0.83021 0.88403 0.76740 1.90743 1.68939 1.34653 1.52989 1.46181 1.04913 1.11461 1.71396 1.18438 0.90513 0.80803 0.93538 0.98008 1.21928 0.97814 1.02458 0.97308 1.21541 0.98620 0.96812 1.41519 0.90291 1.25808 1.02757 0.94553 0.95461 1.70056 1.37628 1.01054 1.46889 0.85321 0.78649 0.77588 0.78642 1.19596 1.18601 1.21531 1.21778 0.93180 0.98394 0.85773 0.91861 0.84010 0.91841 0.77027 0.79080 0.75562 0.91317 0.96934 0.93641 0.92539 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 113.37 1.20 1.50 16 2 O -0.35 -5.58 9.83 -56.18 -0.55 -6.14 16 3 C 0.52 12.01 7.90 70.33 0.56 12.56 16 4 O -0.53 -15.91 16.20 19.94 0.32 -15.59 16 5 C -0.19 -4.38 5.88 -20.03 -0.12 -4.50 16 6 C 0.20 3.50 10.78 85.07 0.92 4.42 16 7 N -0.49 -10.19 10.33 -193.66 -2.00 -12.19 16 8 C 0.18 4.21 10.71 85.04 0.91 5.12 16 9 C -0.20 -5.90 5.89 -20.02 -0.12 -6.02 16 10 C 0.55 21.96 7.75 86.79 0.67 22.63 16 11 O -0.59 -29.38 16.08 -3.88 -0.06 -29.45 16 12 N -0.69 -27.55 5.02 -448.97 -2.25 -29.81 16 13 C 0.27 13.68 2.56 44.24 0.11 13.79 16 14 H 0.00 0.12 7.58 -2.39 -0.02 0.10 16 15 C -0.14 -6.79 9.26 71.98 0.67 -6.12 16 16 C -0.55 -27.97 8.73 25.60 0.22 -27.75 16 17 H 0.08 3.69 7.74 -2.91 -0.02 3.67 16 18 C 0.01 0.75 5.30 84.66 0.45 1.20 16 19 N -0.92 -51.96 11.32 21.45 0.24 -51.72 16 20 Si 0.97 40.99 29.54 68.60 2.03 43.02 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 23 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 24 C 0.04 1.03 9.25 23.01 0.21 1.24 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.21 2.14 7.61 -2.91 -0.02 2.11 16 29 H 0.19 3.48 6.41 -2.91 -0.02 3.46 16 30 H 0.41 12.89 6.60 -92.70 -0.61 12.28 16 31 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 32 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.14 4.67 7.40 -2.91 -0.02 4.65 16 Total: -1.00 -71.40 312.62 3.93 -67.47 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.52 Total: 16.30 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 5.68 Total: 18.09 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -4.01 Total: -93.71 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -0.29 Total: -51.17 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -71.40 3.93 -67.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091243461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.595 kcal (2) G-P(sol) polarization free energy of solvation -71.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds