Wall clock time and date at job start Tue Mar 31 2020 01:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34713 * 116.99855 * 2 1 4 4 O 1.21469 * 120.00067 * 359.97438 * 3 2 1 5 5 C 1.47728 * 119.99803 * 180.02562 * 3 2 1 6 6 C 1.39726 * 120.50187 * 359.71394 * 5 3 2 7 7 N 1.31715 * 120.87784 * 179.76909 * 6 5 3 8 8 C 1.31771 * 122.04374 * 0.50795 * 7 6 5 9 9 C 1.39638 * 120.89713 * 359.76005 * 8 7 6 10 10 C 1.47852 * 120.49137 * 179.97438 * 9 8 7 11 11 O 1.21549 * 120.00165 * 180.02562 * 10 9 8 12 12 N 1.34780 * 119.99906 * 0.02918 * 10 9 8 13 13 C 1.46496 * 119.99936 * 180.02562 * 12 10 9 14 14 H 1.08990 * 109.47296 * 34.99363 * 13 12 10 15 15 C 1.53003 * 109.46641 * 274.99372 * 13 12 10 16 16 C 1.50700 * 109.46870 * 154.99709 * 13 12 10 17 17 H 1.08002 * 120.00263 * 35.00395 * 16 13 12 18 18 C 1.37880 * 119.99798 * 214.99714 * 16 13 12 19 19 N 1.31511 * 120.00199 * 184.91728 * 18 16 13 20 20 Si 1.86806 * 120.00008 * 4.91743 * 18 16 13 21 21 H 1.48501 * 109.46682 * 84.83259 * 20 18 16 22 22 H 1.48497 * 109.47271 * 204.83171 * 20 18 16 23 23 H 1.48504 * 109.47020 * 324.83392 * 20 18 16 24 24 C 1.39760 * 119.01951 * 359.97438 * 9 8 7 25 25 H 1.08999 * 109.47150 * 299.99650 * 1 2 3 26 26 H 1.08996 * 109.47406 * 60.00213 * 1 2 3 27 27 H 1.09000 * 109.46848 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.56185 * 0.02562 * 6 5 3 29 29 H 1.08001 * 119.55351 * 179.74453 * 8 7 6 30 30 H 0.97001 * 120.00045 * 359.97438 * 12 10 9 31 31 H 1.08999 * 109.47028 * 55.04199 * 15 13 12 32 32 H 1.09004 * 109.46663 * 175.03901 * 15 13 12 33 33 H 1.08991 * 109.47301 * 295.03430 * 15 13 12 34 34 H 0.96998 * 120.00632 * 179.97438 * 19 18 16 35 35 H 1.07996 * 120.91813 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3100 0.1125 0.0049 7 7 5.6258 0.1728 -0.0001 8 6 6.2731 1.3205 -0.0005 9 6 5.5816 2.5337 -0.0006 10 6 6.3170 3.8164 -0.0005 11 8 5.7061 4.8672 -0.0001 12 7 7.6648 3.8204 -0.0009 13 6 8.3935 5.0913 -0.0002 14 1 7.8441 5.8248 0.5898 15 6 8.5377 5.5971 -1.4370 16 6 9.7606 4.8861 0.5997 17 1 10.2886 3.9583 0.4358 18 6 10.3374 5.8829 1.3579 19 7 11.5679 5.7438 1.8005 20 14 9.3709 7.4311 1.7562 21 1 8.5308 7.1947 2.9577 22 1 10.3128 8.5478 2.0228 23 1 8.5008 7.7815 0.6049 24 6 4.1841 2.5176 -0.0008 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.8208 -0.8504 0.0091 29 1 7.3531 1.3230 -0.0006 30 1 8.1524 2.9818 -0.0009 31 1 7.5531 5.6615 -1.9001 32 1 9.0012 6.5837 -1.4300 33 1 9.1617 4.9067 -2.0044 34 1 11.9739 6.4452 2.3335 35 1 3.6186 3.4376 -0.0013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091243462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:05 Heat of formation + Delta-G solvation = -86.282736 kcal Electronic energy + Delta-G solvation = -20684.898958 eV Core-core repulsion = 17262.280111 eV Total energy + Delta-G solvation = -3422.618847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.13274 -40.09814 -38.65631 -36.78404 -35.09216 -32.87630 -32.74909 -31.99088 -29.67664 -28.12548 -25.42209 -25.11471 -24.35572 -22.06614 -21.03971 -19.84163 -18.72182 -17.82896 -17.22259 -16.83012 -16.70729 -16.38464 -15.99726 -15.15353 -14.74750 -14.39700 -13.99228 -13.89961 -13.43375 -13.36324 -13.20369 -12.83066 -12.56465 -12.49354 -12.43236 -11.58706 -11.17340 -11.16267 -11.12124 -10.88902 -10.66619 -10.22171 -10.08478 -9.90864 -9.51473 -9.37485 -9.27884 -8.77147 -8.26274 -6.29514 -4.34371 0.13522 0.69847 2.15675 2.25155 3.07966 3.22632 3.30969 3.37604 3.65903 3.79655 3.98766 4.27325 4.33717 4.46341 4.61429 4.76362 4.84793 4.84927 4.93986 5.09698 5.19725 5.28087 5.70128 5.78459 5.98136 6.13829 6.27259 6.44408 6.59759 6.84034 7.08174 7.25848 7.34445 7.42154 7.49897 7.99663 8.41302 8.67003 8.75183 9.31528 10.81871 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032881 B = 0.003705 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.359027 B = 7555.743695 C = 7968.478872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.517 3.483 4 O -0.497 6.497 5 C -0.191 4.191 6 C 0.173 3.827 7 N -0.490 5.490 8 C 0.167 3.833 9 C -0.183 4.183 10 C 0.547 3.453 11 O -0.546 6.546 12 N -0.692 5.692 13 C 0.230 3.770 14 H 0.053 0.947 15 C -0.148 4.148 16 C -0.533 4.533 17 H 0.081 0.919 18 C 0.083 3.917 19 N -0.886 5.886 20 Si 0.873 3.127 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.260 1.260 24 C 0.042 3.958 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.175 0.825 29 H 0.172 0.828 30 H 0.393 0.607 31 H 0.030 0.970 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.269 0.731 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.816 -12.945 -3.968 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.271 6.271 3 C 0.361 3.639 4 O -0.385 6.385 5 C -0.195 4.195 6 C 0.015 3.985 7 N -0.198 5.198 8 C 0.010 3.990 9 C -0.188 4.188 10 C 0.331 3.669 11 O -0.426 6.426 12 N -0.341 5.341 13 C 0.129 3.871 14 H 0.071 0.929 15 C -0.207 4.207 16 C -0.571 4.571 17 H 0.099 0.901 18 C -0.122 4.122 19 N -0.522 5.522 20 Si 0.700 3.300 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.184 1.184 24 C 0.016 3.984 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.192 0.808 29 H 0.189 0.811 30 H 0.228 0.772 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.780 -12.547 -3.859 21.305 hybrid contribution -0.807 1.241 0.327 1.516 sum -17.587 -11.306 -3.532 21.204 Atomic orbital electron populations 1.23320 0.75508 1.03941 1.02867 1.86517 1.23915 1.32272 1.84410 1.20842 0.88476 0.81691 0.72918 1.90879 1.66502 1.35949 1.45210 1.20045 0.90673 0.95853 1.12912 1.23386 0.89257 0.97970 0.87926 1.67844 1.09405 1.28727 1.13834 1.23466 1.01244 0.86535 0.87730 1.21309 0.94487 0.96304 1.06717 1.17972 0.83363 0.87444 0.78119 1.90757 1.68172 1.32371 1.51279 1.46666 1.04444 1.11897 1.71071 1.19218 0.92090 0.81798 0.94022 0.92943 1.22225 0.98975 1.01007 0.98513 1.20981 0.99050 1.04393 1.32708 0.90144 1.24936 0.94744 0.98253 0.94286 1.69870 1.12917 1.34448 1.34933 0.86908 0.80161 0.82903 0.80060 1.19775 1.21082 1.18405 1.21876 0.93276 0.97901 0.85377 0.91642 0.91648 0.87742 0.80834 0.81069 0.77232 0.95131 0.92675 0.93228 0.92112 0.82113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.29 9.84 -40.53 -0.40 -3.69 16 3 C 0.52 6.15 7.90 34.61 0.27 6.43 16 4 O -0.50 -7.27 16.20 -19.24 -0.31 -7.58 16 5 C -0.19 -2.29 5.88 -104.89 -0.62 -2.91 16 6 C 0.17 1.82 10.78 -17.05 -0.18 1.64 16 7 N -0.49 -5.88 10.33 -12.56 -0.13 -6.01 16 8 C 0.17 2.09 10.71 -17.06 -0.18 1.91 16 9 C -0.18 -2.69 5.88 -104.87 -0.62 -3.31 16 10 C 0.55 10.23 7.75 -12.32 -0.10 10.14 16 11 O -0.55 -12.18 16.08 5.32 0.09 -12.09 16 12 N -0.69 -13.21 5.02 -55.88 -0.28 -13.49 16 13 C 0.23 5.29 2.22 -69.08 -0.15 5.13 16 14 H 0.05 1.32 4.73 -51.93 -0.25 1.07 16 15 C -0.15 -3.14 9.47 37.16 0.35 -2.79 16 16 C -0.53 -13.82 9.05 -34.44 -0.31 -14.13 16 17 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 18 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 19 N -0.89 -25.48 13.96 55.43 0.77 -24.71 16 20 Si 0.87 21.10 26.99 -169.99 -4.59 16.51 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.26 -6.17 6.82 56.52 0.39 -5.79 16 24 C 0.04 0.59 9.25 -38.44 -0.36 0.23 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.17 1.31 7.61 -52.48 -0.40 0.91 16 29 H 0.17 1.81 6.41 -52.49 -0.34 1.47 16 30 H 0.39 6.35 6.65 -40.82 -0.27 6.08 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.16 2.42 7.40 -52.49 -0.39 2.03 16 LS Contribution 312.37 15.07 4.71 4.71 Total: -1.00 -32.41 312.37 -4.81 -37.22 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -3.75 Total: 3.32 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -0.92 Total: 5.80 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.36 Total: -44.21 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.62 Total: -23.36 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.59 Total: 16.51 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.41 -4.81 -37.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091243462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.061 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds