Wall clock time and date at job start Tue Mar 31 2020 01:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34713 * 116.99855 * 2 1 4 4 O 1.21469 * 120.00067 * 359.97438 * 3 2 1 5 5 C 1.47728 * 119.99803 * 180.02562 * 3 2 1 6 6 C 1.39726 * 120.50187 * 359.71394 * 5 3 2 7 7 N 1.31715 * 120.87784 * 179.76909 * 6 5 3 8 8 C 1.31771 * 122.04374 * 0.50795 * 7 6 5 9 9 C 1.39638 * 120.89713 * 359.76005 * 8 7 6 10 10 C 1.47852 * 120.49137 * 179.97438 * 9 8 7 11 11 O 1.21549 * 120.00165 * 180.02562 * 10 9 8 12 12 N 1.34780 * 119.99906 * 0.02918 * 10 9 8 13 13 C 1.46496 * 119.99936 * 180.02562 * 12 10 9 14 14 H 1.08990 * 109.47296 * 34.99363 * 13 12 10 15 15 C 1.53003 * 109.46641 * 274.99372 * 13 12 10 16 16 C 1.50700 * 109.46870 * 154.99709 * 13 12 10 17 17 H 1.08002 * 120.00263 * 35.00395 * 16 13 12 18 18 C 1.37880 * 119.99798 * 214.99714 * 16 13 12 19 19 N 1.31511 * 120.00199 * 184.91728 * 18 16 13 20 20 Si 1.86806 * 120.00008 * 4.91743 * 18 16 13 21 21 H 1.48501 * 109.46682 * 84.83259 * 20 18 16 22 22 H 1.48497 * 109.47271 * 204.83171 * 20 18 16 23 23 H 1.48504 * 109.47020 * 324.83392 * 20 18 16 24 24 C 1.39760 * 119.01951 * 359.97438 * 9 8 7 25 25 H 1.08999 * 109.47150 * 299.99650 * 1 2 3 26 26 H 1.08996 * 109.47406 * 60.00213 * 1 2 3 27 27 H 1.09000 * 109.46848 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.56185 * 0.02562 * 6 5 3 29 29 H 1.08001 * 119.55351 * 179.74453 * 8 7 6 30 30 H 0.97001 * 120.00045 * 359.97438 * 12 10 9 31 31 H 1.08999 * 109.47028 * 55.04199 * 15 13 12 32 32 H 1.09004 * 109.46663 * 175.03901 * 15 13 12 33 33 H 1.08991 * 109.47301 * 295.03430 * 15 13 12 34 34 H 0.96998 * 120.00632 * 179.97438 * 19 18 16 35 35 H 1.07996 * 120.91813 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3100 0.1125 0.0049 7 7 5.6258 0.1728 -0.0001 8 6 6.2731 1.3205 -0.0005 9 6 5.5816 2.5337 -0.0006 10 6 6.3170 3.8164 -0.0005 11 8 5.7061 4.8672 -0.0001 12 7 7.6648 3.8204 -0.0009 13 6 8.3935 5.0913 -0.0002 14 1 7.8441 5.8248 0.5898 15 6 8.5377 5.5971 -1.4370 16 6 9.7606 4.8861 0.5997 17 1 10.2886 3.9583 0.4358 18 6 10.3374 5.8829 1.3579 19 7 11.5679 5.7438 1.8005 20 14 9.3709 7.4311 1.7562 21 1 8.5308 7.1947 2.9577 22 1 10.3128 8.5478 2.0228 23 1 8.5008 7.7815 0.6049 24 6 4.1841 2.5176 -0.0008 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.8208 -0.8504 0.0091 29 1 7.3531 1.3230 -0.0006 30 1 8.1524 2.9818 -0.0009 31 1 7.5531 5.6615 -1.9001 32 1 9.0012 6.5837 -1.4300 33 1 9.1617 4.9067 -2.0044 34 1 11.9739 6.4452 2.3335 35 1 3.6186 3.4376 -0.0013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091243462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:03 Heat of formation + Delta-G solvation = -109.193349 kcal Electronic energy + Delta-G solvation = -20685.892437 eV Core-core repulsion = 17262.280111 eV Total energy + Delta-G solvation = -3423.612326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.13238 -41.17081 -40.02306 -37.64758 -36.84085 -34.53933 -33.89597 -33.38244 -31.27558 -28.77838 -27.34418 -26.16256 -25.45983 -23.23625 -22.42021 -21.39921 -20.02664 -18.95046 -18.59415 -17.87857 -17.58357 -17.52153 -17.48222 -16.56396 -16.11311 -16.04852 -15.17909 -14.97075 -14.70606 -14.53706 -14.41209 -14.31787 -14.21577 -13.70140 -13.31987 -13.08645 -13.05191 -12.80876 -12.47550 -12.09572 -11.88696 -11.87113 -11.33153 -11.28106 -11.23789 -10.84985 -10.66920 -10.56683 -9.91570 -8.39323 -6.45763 -0.83821 -0.39004 1.19631 1.29325 1.34944 1.44041 1.44393 1.82982 2.21973 2.26967 2.63718 3.00059 3.08962 3.37757 3.52287 3.55903 3.80116 3.88163 4.21831 4.32630 4.35384 4.46785 4.67102 4.71445 4.73613 4.78746 4.81681 5.07959 5.14504 5.18759 5.34333 5.44258 5.63663 6.09010 6.45227 6.54933 6.59245 6.74751 7.16760 7.29055 8.75212 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032881 B = 0.003705 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.359027 B = 7555.743695 C = 7968.478872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.346 6.346 3 C 0.523 3.477 4 O -0.531 6.531 5 C -0.192 4.192 6 C 0.196 3.804 7 N -0.494 5.494 8 C 0.182 3.818 9 C -0.198 4.198 10 C 0.550 3.450 11 O -0.587 6.587 12 N -0.690 5.690 13 C 0.233 3.767 14 H 0.032 0.968 15 C -0.143 4.143 16 C -0.526 4.526 17 H 0.064 0.936 18 C 0.036 3.964 19 N -0.927 5.927 20 Si 0.922 3.078 21 H -0.275 1.275 22 H -0.278 1.278 23 H -0.256 1.256 24 C 0.037 3.963 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.141 0.859 28 H 0.212 0.788 29 H 0.190 0.810 30 H 0.408 0.592 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.271 0.729 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.218 -15.054 -4.430 24.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.262 6.262 3 C 0.368 3.632 4 O -0.422 6.422 5 C -0.195 4.195 6 C 0.038 3.962 7 N -0.202 5.202 8 C 0.025 3.975 9 C -0.203 4.203 10 C 0.337 3.663 11 O -0.469 6.469 12 N -0.339 5.339 13 C 0.130 3.870 14 H 0.050 0.950 15 C -0.201 4.201 16 C -0.564 4.564 17 H 0.082 0.918 18 C -0.165 4.165 19 N -0.565 5.565 20 Si 0.747 3.253 21 H -0.201 1.201 22 H -0.203 1.203 23 H -0.180 1.180 24 C 0.011 3.989 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.159 0.841 28 H 0.228 0.772 29 H 0.207 0.793 30 H 0.245 0.755 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.189 -14.709 -4.331 23.790 hybrid contribution -0.489 1.719 0.442 1.840 sum -18.678 -12.990 -3.889 23.081 Atomic orbital electron populations 1.23671 0.73663 1.06316 1.02755 1.86506 1.25604 1.30447 1.83617 1.20803 0.88327 0.81991 0.72110 1.90873 1.67141 1.37252 1.46949 1.20048 0.91081 0.95422 1.12997 1.23956 0.88652 0.98771 0.84784 1.67997 1.10019 1.27895 1.14269 1.23680 1.02035 0.85759 0.86030 1.20861 0.94418 0.95018 1.10019 1.18386 0.82883 0.88422 0.76611 1.90732 1.68849 1.34326 1.53033 1.46319 1.04857 1.11323 1.71432 1.18975 0.90510 0.82986 0.94557 0.95016 1.22126 0.99617 1.00988 0.97408 1.21166 1.00037 1.03388 1.31837 0.91814 1.25555 0.95348 1.00848 0.94705 1.69958 1.14310 1.35651 1.36574 0.86133 0.79077 0.80414 0.79707 1.20115 1.20316 1.17968 1.21787 0.93098 0.98404 0.85640 0.91868 0.91774 0.84093 0.77160 0.79317 0.75496 0.94408 0.93181 0.91911 0.91968 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.35 -5.43 9.84 -56.23 -0.55 -5.98 16 3 C 0.52 11.58 7.90 70.33 0.56 12.13 16 4 O -0.53 -15.29 16.20 19.94 0.32 -14.97 16 5 C -0.19 -4.23 5.88 -20.04 -0.12 -4.34 16 6 C 0.20 3.44 10.78 85.07 0.92 4.36 16 7 N -0.49 -10.23 10.33 -193.65 -2.00 -12.23 16 8 C 0.18 4.13 10.71 85.04 0.91 5.04 16 9 C -0.20 -5.64 5.88 -20.03 -0.12 -5.76 16 10 C 0.55 20.46 7.75 86.79 0.67 21.13 16 11 O -0.59 -26.53 16.08 -3.87 -0.06 -26.59 16 12 N -0.69 -25.88 5.02 -448.98 -2.26 -28.14 16 13 C 0.23 10.61 2.22 44.25 0.10 10.71 16 14 H 0.03 1.60 4.73 -2.39 -0.01 1.59 16 15 C -0.14 -5.91 9.47 71.98 0.68 -5.23 16 16 C -0.53 -27.30 9.05 25.60 0.23 -27.07 16 17 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 18 C 0.04 2.00 5.47 84.66 0.46 2.46 16 19 N -0.93 -53.91 13.96 21.45 0.30 -53.61 16 20 Si 0.92 43.73 26.99 68.60 1.85 45.58 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.26 -11.84 6.82 99.48 0.68 -11.17 16 24 C 0.04 1.02 9.25 23.01 0.21 1.24 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.21 2.12 7.61 -2.91 -0.02 2.09 16 29 H 0.19 3.51 6.41 -2.91 -0.02 3.49 16 30 H 0.41 12.70 6.65 -92.71 -0.62 12.09 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 34 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.14 4.46 7.40 -2.91 -0.02 4.43 16 Total: -1.00 -70.29 312.37 3.80 -66.49 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.49 Total: 13.30 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 5.70 Total: 16.17 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -3.96 Total: -93.98 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -0.29 Total: -47.54 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.85 Total: 45.58 kcal Total: -70.29 3.80 -66.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091243462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.708 kcal (2) G-P(sol) polarization free energy of solvation -70.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds