Wall clock time and date at job start Tue Mar 31 2020 01:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47031 * 2 1 4 4 C 1.35960 * 117.00243 * 180.02562 * 3 2 1 5 5 C 1.37942 * 119.98436 * 0.25435 * 4 3 2 6 6 C 1.40206 * 119.81986 * 180.27504 * 5 4 3 7 7 C 1.46703 * 120.10101 * 179.70262 * 6 5 4 8 8 N 1.30732 * 119.99939 * 194.82295 * 7 6 5 9 9 N 1.40102 * 119.99926 * 25.61565 * 8 7 6 10 10 C 1.34772 * 119.99565 * 186.52375 * 9 8 7 11 11 O 1.21987 * 120.00477 * 0.02562 * 10 9 8 12 12 C 1.40594 * 119.99798 * 179.97438 * 10 9 8 13 13 H 1.07998 * 119.99450 * 354.90372 * 12 10 9 14 14 C 1.40186 * 119.99949 * 174.90432 * 12 10 9 15 15 N 1.30610 * 120.00137 * 5.09732 * 14 12 10 16 16 Si 1.86806 * 119.99884 * 185.09337 * 14 12 10 17 17 H 1.48499 * 109.46777 * 94.99973 * 16 14 12 18 18 H 1.48496 * 109.47174 * 215.00022 * 16 14 12 19 19 H 1.48494 * 109.47126 * 335.00338 * 16 14 12 20 20 C 1.40343 * 119.79644 * 359.72503 * 6 5 4 21 21 C 1.37579 * 119.97020 * 359.97438 * 20 6 5 22 22 C 1.39080 * 120.17571 * 0.02562 * 21 20 6 23 23 O 1.35742 * 119.90003 * 179.97438 * 22 21 20 24 24 H 1.08992 * 109.47320 * 60.00037 * 1 2 3 25 25 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47267 * 299.99634 * 1 2 3 27 27 H 1.09004 * 109.47267 * 240.00366 * 2 1 3 28 28 H 1.08996 * 109.47642 * 119.99587 * 2 1 3 29 29 H 1.08003 * 120.08349 * 0.02562 * 5 4 3 30 30 H 1.07997 * 119.99436 * 14.82494 * 7 6 5 31 31 H 0.97000 * 119.99782 * 6.52042 * 9 8 7 32 32 H 0.97001 * 119.99997 * 179.97438 * 15 14 12 33 33 H 1.08010 * 120.01886 * 180.02562 * 20 6 5 34 34 H 1.08003 * 119.91745 * 179.97438 * 21 20 6 35 35 H 0.96694 * 113.99721 * 90.00002 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3541 1.5255 -0.0005 5 6 4.1942 0.4314 -0.0064 6 6 5.5836 0.6191 -0.0011 7 6 6.4827 -0.5401 -0.0006 8 7 7.7471 -0.3865 0.2938 9 7 8.1535 0.6848 1.1000 10 6 9.4659 0.9206 1.2960 11 8 10.2999 0.2016 0.7711 12 6 9.8738 1.9960 2.1046 13 1 9.1400 2.6819 2.5013 14 6 11.2330 2.1780 2.3957 15 7 12.1292 1.4098 1.8365 16 14 11.7624 3.5193 3.5833 17 1 11.9121 2.9444 4.9443 18 1 13.0607 4.0882 3.1406 19 1 10.7352 4.5913 3.6090 20 6 6.1116 1.9194 0.0043 21 6 5.2660 3.0046 0.0038 22 6 3.8879 2.8170 -0.0015 23 8 3.0587 3.8917 -0.0014 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7826 -0.5671 -0.0109 30 1 6.0999 -1.5203 -0.2436 31 1 7.4903 1.2568 1.5170 32 1 13.0697 1.5360 2.0376 33 1 7.1814 2.0682 0.0080 34 1 5.6732 4.0049 0.0083 35 1 2.8215 4.2055 -0.8847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104344624.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:27 Heat of formation + Delta-G solvation = -38.323592 kcal Electronic energy + Delta-G solvation = -20702.839716 eV Core-core repulsion = 17282.300533 eV Total energy + Delta-G solvation = -3420.539183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.42351 -38.38592 -37.73904 -36.66536 -34.77428 -32.68682 -32.00725 -31.31834 -29.87585 -28.63092 -26.63686 -24.29222 -23.29537 -21.78431 -21.17620 -19.72539 -18.47774 -18.07409 -17.25455 -16.32666 -16.28844 -15.69181 -15.53327 -15.33146 -14.44635 -14.10693 -13.97550 -13.54497 -13.31569 -13.02301 -12.86601 -12.68762 -12.44395 -12.15468 -11.88206 -11.54822 -11.44265 -11.28171 -11.05893 -10.70916 -10.60110 -10.48649 -10.38639 -9.66997 -9.05409 -8.83197 -8.28077 -7.79563 -7.18022 -6.43858 -4.98920 0.86256 1.40626 2.55006 3.01901 3.03949 3.10523 3.14653 3.62608 3.91057 4.19121 4.23560 4.40963 4.66638 4.67838 4.85090 4.93819 4.98988 5.14427 5.30956 5.34597 5.51927 5.62664 5.70869 5.75053 5.81172 5.97103 6.12706 6.32085 6.42773 6.66254 6.81757 7.17087 7.17856 7.72896 7.79061 7.95241 8.58207 8.72857 9.23082 10.34768 10.58927 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026275 B = 0.003830 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.414296 B = 7308.045472 C = 8037.542214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.309 6.309 4 C 0.106 3.894 5 C -0.185 4.185 6 C -0.034 4.034 7 C 0.008 3.992 8 N -0.178 5.178 9 N -0.584 5.584 10 C 0.551 3.449 11 O -0.553 6.553 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.088 3.912 15 N -0.742 5.742 16 Si 0.916 3.084 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.152 4.152 21 C -0.095 4.095 22 C 0.064 3.936 23 O -0.486 6.486 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.135 0.865 30 H 0.169 0.831 31 H 0.377 0.623 32 H 0.275 0.725 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.764 1.065 -3.484 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.223 6.223 4 C 0.060 3.940 5 C -0.207 4.207 6 C -0.037 4.037 7 C -0.200 4.200 8 N 0.012 4.988 9 N -0.333 5.333 10 C 0.360 3.640 11 O -0.433 6.433 12 C -0.572 4.572 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.369 5.369 16 Si 0.740 3.260 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.173 4.173 21 C -0.114 4.114 22 C 0.017 3.983 23 O -0.295 6.295 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.153 0.847 30 H 0.185 0.815 31 H 0.217 0.783 32 H 0.086 0.914 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -18.001 0.252 -3.302 18.303 hybrid contribution -0.863 1.208 0.263 1.508 sum -18.864 1.460 -3.039 19.163 Atomic orbital electron populations 1.21758 0.92822 1.02741 1.03451 1.22807 0.95807 0.82270 1.01564 1.86115 1.18521 1.28937 1.88762 1.19275 0.82631 0.93534 0.98525 1.21262 0.92967 0.97847 1.08601 1.19642 0.92862 0.93847 0.97304 1.24861 0.89123 0.97263 1.08712 1.75164 1.13969 1.09394 1.00238 1.48634 1.10336 1.31024 1.43298 1.16852 0.77837 0.86356 0.82948 1.90735 1.49242 1.50842 1.52433 1.19766 0.93394 1.11641 1.32404 0.90973 1.25768 0.96092 0.96354 0.95347 1.70017 1.01941 1.32282 1.32690 0.86202 0.78716 0.80727 0.80339 1.19421 1.20097 1.18509 1.21821 1.01656 0.91306 1.02540 1.21191 0.91095 1.00020 0.99055 1.17954 0.88647 0.83794 1.07878 1.84827 1.66377 1.45341 1.32965 0.91638 0.90422 0.91538 0.91965 0.91904 0.84749 0.81451 0.78303 0.91412 0.83570 0.84445 0.76341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.05 0.44 5.46 37.16 0.20 0.65 16 3 O -0.31 -3.83 9.92 -34.17 -0.34 -4.17 16 4 C 0.11 1.44 6.70 -39.13 -0.26 1.18 16 5 C -0.19 -2.42 8.78 -38.95 -0.34 -2.76 16 6 C -0.03 -0.52 5.63 -104.95 -0.59 -1.11 16 7 C 0.01 0.14 11.17 -14.60 -0.16 -0.03 16 8 N -0.18 -3.95 11.07 32.13 0.36 -3.59 16 9 N -0.58 -13.86 4.33 28.90 0.13 -13.73 16 10 C 0.55 15.87 7.65 -15.37 -0.12 15.75 16 11 O -0.55 -18.33 15.21 4.93 0.08 -18.25 16 12 C -0.54 -14.70 9.25 -37.96 -0.35 -15.05 16 13 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 14 C 0.09 2.38 5.49 -17.34 -0.10 2.28 16 15 N -0.74 -21.55 11.72 55.56 0.65 -20.89 16 16 Si 0.92 19.26 29.56 -169.99 -5.03 14.23 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 20 C -0.15 -2.50 7.92 -39.03 -0.31 -2.80 16 21 C -0.10 -1.37 9.96 -39.51 -0.39 -1.76 16 22 C 0.06 0.89 6.74 -38.71 -0.26 0.63 16 23 O -0.49 -6.13 13.27 -33.49 -0.44 -6.58 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.47 7.64 -51.93 -0.40 0.08 16 28 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 29 H 0.13 1.38 6.28 -52.48 -0.33 1.05 16 30 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 31 H 0.38 7.93 6.02 -182.60 -1.10 6.83 16 32 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 33 H 0.15 2.76 5.66 -52.48 -0.30 2.46 16 34 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 35 H 0.38 3.00 9.06 45.56 0.41 3.41 16 LS Contribution 310.46 15.07 4.68 4.68 Total: -1.00 -36.06 310.46 -5.99 -42.06 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -3.77 Total: 9.91 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.30 Total: -3.65 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 1.13 Total: -38.22 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.71 Total: -29.00 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -36.06 -5.99 -42.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104344624.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.732 kcal (2) G-P(sol) polarization free energy of solvation -36.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds