Wall clock time and date at job start Tue Mar 31 2020 01:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47031 * 2 1 4 4 C 1.35960 * 117.00243 * 180.02562 * 3 2 1 5 5 C 1.37942 * 119.98436 * 0.25435 * 4 3 2 6 6 C 1.40206 * 119.81986 * 180.27504 * 5 4 3 7 7 C 1.46703 * 120.10101 * 179.70262 * 6 5 4 8 8 N 1.30732 * 119.99939 * 194.82295 * 7 6 5 9 9 N 1.40102 * 119.99926 * 25.61565 * 8 7 6 10 10 C 1.34772 * 119.99565 * 186.52375 * 9 8 7 11 11 O 1.21987 * 120.00477 * 0.02562 * 10 9 8 12 12 C 1.40594 * 119.99798 * 179.97438 * 10 9 8 13 13 H 1.07998 * 119.99450 * 354.90372 * 12 10 9 14 14 C 1.40186 * 119.99949 * 174.90432 * 12 10 9 15 15 N 1.30610 * 120.00137 * 5.09732 * 14 12 10 16 16 Si 1.86806 * 119.99884 * 185.09337 * 14 12 10 17 17 H 1.48499 * 109.46777 * 94.99973 * 16 14 12 18 18 H 1.48496 * 109.47174 * 215.00022 * 16 14 12 19 19 H 1.48494 * 109.47126 * 335.00338 * 16 14 12 20 20 C 1.40343 * 119.79644 * 359.72503 * 6 5 4 21 21 C 1.37579 * 119.97020 * 359.97438 * 20 6 5 22 22 C 1.39080 * 120.17571 * 0.02562 * 21 20 6 23 23 O 1.35742 * 119.90003 * 179.97438 * 22 21 20 24 24 H 1.08992 * 109.47320 * 60.00037 * 1 2 3 25 25 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47267 * 299.99634 * 1 2 3 27 27 H 1.09004 * 109.47267 * 240.00366 * 2 1 3 28 28 H 1.08996 * 109.47642 * 119.99587 * 2 1 3 29 29 H 1.08003 * 120.08349 * 0.02562 * 5 4 3 30 30 H 1.07997 * 119.99436 * 14.82494 * 7 6 5 31 31 H 0.97000 * 119.99782 * 6.52042 * 9 8 7 32 32 H 0.97001 * 119.99997 * 179.97438 * 15 14 12 33 33 H 1.08010 * 120.01886 * 180.02562 * 20 6 5 34 34 H 1.08003 * 119.91745 * 179.97438 * 21 20 6 35 35 H 0.96694 * 113.99721 * 90.00002 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3541 1.5255 -0.0005 5 6 4.1942 0.4314 -0.0064 6 6 5.5836 0.6191 -0.0011 7 6 6.4827 -0.5401 -0.0006 8 7 7.7471 -0.3865 0.2938 9 7 8.1535 0.6848 1.1000 10 6 9.4659 0.9206 1.2960 11 8 10.2999 0.2016 0.7711 12 6 9.8738 1.9960 2.1046 13 1 9.1400 2.6819 2.5013 14 6 11.2330 2.1780 2.3957 15 7 12.1292 1.4098 1.8365 16 14 11.7624 3.5193 3.5833 17 1 11.9121 2.9444 4.9443 18 1 13.0607 4.0882 3.1406 19 1 10.7352 4.5913 3.6090 20 6 6.1116 1.9194 0.0043 21 6 5.2660 3.0046 0.0038 22 6 3.8879 2.8170 -0.0015 23 8 3.0587 3.8917 -0.0014 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7826 -0.5671 -0.0109 30 1 6.0999 -1.5203 -0.2436 31 1 7.4903 1.2568 1.5170 32 1 13.0697 1.5360 2.0376 33 1 7.1814 2.0682 0.0080 34 1 5.6732 4.0049 0.0083 35 1 2.8215 4.2055 -0.8847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104344624.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:26 Heat of formation + Delta-G solvation = -66.195785 kcal Electronic energy + Delta-G solvation = -20704.048345 eV Core-core repulsion = 17282.300533 eV Total energy + Delta-G solvation = -3421.747812 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49096 -39.90666 -38.92011 -38.15927 -36.27695 -34.72641 -32.95709 -32.68881 -31.17602 -29.85894 -28.57262 -25.17812 -24.62519 -22.83283 -22.61438 -21.31883 -19.67866 -19.56258 -18.67556 -17.70934 -17.33915 -17.16593 -16.94016 -16.40043 -15.97391 -15.54392 -15.19713 -14.79152 -14.68779 -14.48087 -14.13715 -13.62759 -13.41846 -13.37495 -13.29498 -13.03701 -12.84528 -12.70045 -12.37568 -12.23755 -12.02217 -11.64655 -11.57478 -11.19601 -10.97947 -10.11888 -10.00339 -9.45904 -8.76228 -8.44312 -7.10917 -0.35604 0.27648 1.18768 1.38810 1.42156 1.57427 2.12510 2.15668 2.37800 2.39114 2.74615 3.18489 3.61018 3.63240 3.75763 4.07437 4.09407 4.10535 4.21185 4.41863 4.47578 4.61075 4.76092 4.88603 4.92575 4.98288 5.08151 5.16898 5.18872 5.27887 5.49581 5.56751 5.80163 6.00732 6.28256 6.66498 6.84456 6.89590 7.40028 8.38836 8.56396 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026275 B = 0.003830 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.414296 B = 7308.045472 C = 8037.542214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.038 3.962 3 O -0.319 6.319 4 C 0.102 3.898 5 C -0.160 4.160 6 C -0.064 4.064 7 C 0.069 3.931 8 N -0.259 5.259 9 N -0.589 5.589 10 C 0.541 3.459 11 O -0.616 6.616 12 C -0.562 4.562 13 H 0.091 0.909 14 C 0.032 3.968 15 N -0.798 5.798 16 Si 1.007 2.993 17 H -0.260 1.260 18 H -0.267 1.267 19 H -0.246 1.246 20 C -0.162 4.162 21 C -0.102 4.102 22 C 0.075 3.925 23 O -0.494 6.494 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.170 0.830 30 H 0.213 0.787 31 H 0.386 0.614 32 H 0.282 0.718 33 H 0.115 0.885 34 H 0.148 0.852 35 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.943 1.658 -2.999 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.036 4.036 3 O -0.233 6.233 4 C 0.056 3.944 5 C -0.181 4.181 6 C -0.067 4.067 7 C -0.140 4.140 8 N -0.066 5.066 9 N -0.337 5.337 10 C 0.351 3.649 11 O -0.502 6.502 12 C -0.598 4.598 13 H 0.109 0.891 14 C -0.187 4.187 15 N -0.426 5.426 16 Si 0.825 3.175 17 H -0.184 1.184 18 H -0.192 1.192 19 H -0.169 1.169 20 C -0.183 4.183 21 C -0.121 4.121 22 C 0.028 3.972 23 O -0.306 6.306 24 H 0.083 0.917 25 H 0.119 0.881 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.187 0.813 30 H 0.229 0.771 31 H 0.227 0.773 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.166 0.834 35 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -21.263 0.852 -2.838 21.468 hybrid contribution -0.351 0.999 -0.047 1.060 sum -21.613 1.851 -2.885 21.883 Atomic orbital electron populations 1.21791 0.91426 1.04179 1.03111 1.23181 0.97021 0.80716 1.02726 1.86134 1.17410 1.31387 1.88419 1.19348 0.83558 0.93382 0.98142 1.21493 0.91419 0.99487 1.05713 1.19644 0.93951 0.92945 1.00115 1.25775 0.87473 0.99047 1.01737 1.75149 1.16613 1.10272 1.04541 1.47775 1.08854 1.31904 1.45185 1.17175 0.79015 0.86219 0.82523 1.90661 1.51539 1.52996 1.54971 1.20285 0.94745 1.12098 1.32689 0.89058 1.27114 0.95632 0.98992 0.96955 1.70174 1.02739 1.34855 1.34811 0.84873 0.78602 0.76907 0.77129 1.18415 1.19182 1.16851 1.21657 1.00396 0.92706 1.03543 1.21252 0.91424 1.00003 0.99398 1.18060 0.88487 0.84641 1.06010 1.84758 1.65898 1.44938 1.35055 0.91686 0.88104 0.92196 0.90330 0.91068 0.81312 0.77064 0.77259 0.90744 0.86689 0.83448 0.73648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 71.98 0.74 -0.73 16 2 C 0.04 0.51 5.46 71.98 0.39 0.90 16 3 O -0.32 -6.78 9.92 -79.18 -0.79 -7.56 16 4 C 0.10 2.44 6.70 22.56 0.15 2.59 16 5 C -0.16 -3.60 8.78 22.68 0.20 -3.40 16 6 C -0.06 -1.86 5.63 -20.08 -0.11 -1.98 16 7 C 0.07 2.20 11.17 87.07 0.97 3.17 16 8 N -0.26 -11.83 11.07 -52.27 -0.58 -12.41 16 9 N -0.59 -29.36 4.33 -180.57 -0.78 -30.14 16 10 C 0.54 32.98 7.65 84.82 0.65 33.63 16 11 O -0.62 -43.59 15.21 -5.27 -0.08 -43.67 16 12 C -0.56 -32.06 9.25 23.32 0.22 -31.84 16 13 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 14 C 0.03 1.77 5.49 85.35 0.47 2.23 16 15 N -0.80 -48.48 11.72 21.86 0.26 -48.22 16 16 Si 1.01 39.87 29.56 68.60 2.03 41.90 16 17 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 18 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 19 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 20 C -0.16 -5.30 7.92 22.63 0.18 -5.12 16 21 C -0.10 -2.85 9.96 22.32 0.22 -2.62 16 22 C 0.07 1.91 6.74 22.84 0.15 2.07 16 23 O -0.49 -11.14 13.27 -76.74 -1.02 -12.16 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.08 0.82 7.64 -2.39 -0.02 0.80 16 28 H 0.07 0.86 7.67 -2.39 -0.02 0.84 16 29 H 0.17 2.57 6.28 -2.91 -0.02 2.55 16 30 H 0.21 4.65 8.06 -2.91 -0.02 4.62 16 31 H 0.39 16.97 6.02 -213.32 -1.28 15.69 16 32 H 0.28 15.26 8.29 -92.71 -0.77 14.49 16 33 H 0.12 4.58 5.66 -2.91 -0.02 4.56 16 34 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 35 H 0.41 5.18 9.06 -74.06 -0.67 4.51 16 Total: -1.00 -84.45 310.46 2.47 -81.98 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -0.80 Total: 31.40 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 4.23 Total: -1.10 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -1.11 Total: -90.77 kcal Atomic # 8 Polarization: -61.51 SS G_CDS: -1.88 Total: -63.40 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -84.45 2.47 -81.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104344624.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.784 kcal (2) G-P(sol) polarization free energy of solvation -84.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds