Wall clock time and date at job start Tue Mar 31 2020 01:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47063 * 2 1 4 4 C 1.50699 * 109.46894 * 120.00301 * 2 1 3 5 5 H 1.07993 * 119.99829 * 119.99917 * 4 2 1 6 6 C 1.37873 * 120.00029 * 300.00084 * 4 2 1 7 7 N 1.31520 * 119.99941 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00141 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.46945 * 90.00383 * 8 6 4 10 10 H 1.48508 * 109.47170 * 210.00571 * 8 6 4 11 11 H 1.48501 * 109.46957 * 330.00109 * 8 6 4 12 12 O 1.45199 * 109.46687 * 240.00124 * 2 1 3 13 13 C 1.34713 * 116.99902 * 90.00867 * 12 2 1 14 14 O 1.21468 * 119.99628 * 359.97438 * 13 12 2 15 15 C 1.47740 * 119.99822 * 179.97438 * 13 12 2 16 16 C 1.39667 * 120.12025 * 359.72264 * 15 13 12 17 17 C 1.37956 * 119.99203 * 179.74309 * 16 15 13 18 18 C 1.38271 * 120.22582 * 0.53295 * 17 16 15 19 19 C 1.38946 * 120.23401 * 359.73773 * 18 17 16 20 20 N 1.39985 * 119.99606 * 180.02562 * 19 18 17 21 21 C 1.34769 * 120.00080 * 213.31022 * 20 19 18 22 22 N 1.34771 * 120.00172 * 185.31871 * 21 20 19 23 23 O 1.21596 * 120.00044 * 5.31700 * 21 20 19 24 24 C 1.38614 * 120.00966 * 359.97438 * 19 18 17 25 25 H 1.09002 * 109.47360 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47055 * 59.99907 * 1 2 3 27 27 H 1.09002 * 109.47460 * 300.00112 * 1 2 3 28 28 H 0.97004 * 119.99630 * 180.02562 * 7 6 4 29 29 H 1.08000 * 119.99870 * 359.97438 * 16 15 13 30 30 H 1.07999 * 119.89006 * 180.27003 * 17 16 15 31 31 H 1.07999 * 119.87877 * 179.76595 * 18 17 16 32 32 H 0.96995 * 119.99561 * 33.30685 * 20 19 18 33 33 H 0.96996 * 120.00187 * 359.97438 * 22 21 20 34 34 H 0.97004 * 120.00628 * 180.02562 * 22 21 20 35 35 H 1.07992 * 120.11706 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5885 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1379 -0.8593 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9952 3.9072 11 1 0.8492 2.1772 1.4924 12 8 2.0139 -0.6845 -1.1856 13 6 2.2179 0.0668 -2.2850 14 8 1.9971 1.2608 -2.2542 15 6 2.7101 -0.5617 -3.5282 16 6 2.9703 -1.9334 -3.5647 17 6 3.4248 -2.5184 -4.7284 18 6 3.6349 -1.7493 -5.8582 19 6 3.3845 -0.3829 -5.8308 20 7 3.5983 0.3909 -6.9775 21 6 4.0166 1.6668 -6.8612 22 7 4.1196 2.4447 -7.9569 23 8 4.3009 2.1161 -5.7677 24 6 2.9219 0.2140 -4.6684 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 1.9032 -0.5281 4.4375 29 1 2.8121 -2.5366 -2.6829 30 1 3.6213 -3.5800 -4.7560 31 1 3.9944 -2.2125 -6.7651 32 1 3.4455 0.0088 -7.8558 33 1 3.8931 2.0863 -8.8292 34 1 4.4210 3.3630 -7.8733 35 1 2.7263 1.2758 -4.6453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113695158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:24 Heat of formation + Delta-G solvation = -80.404664 kcal Electronic energy + Delta-G solvation = -20941.466108 eV Core-core repulsion = 17519.102153 eV Total energy + Delta-G solvation = -3422.363955 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83123 -39.69325 -38.33409 -35.82760 -34.91995 -33.95416 -33.13557 -31.29443 -30.46197 -29.39487 -25.27614 -24.50941 -23.31694 -21.60549 -21.16256 -19.92235 -18.62612 -18.36616 -17.15930 -16.54558 -16.50013 -15.87043 -15.62931 -15.29781 -15.09719 -14.82118 -14.33676 -14.21551 -13.65188 -13.10966 -12.89045 -12.61499 -12.26031 -11.96126 -11.82650 -11.59129 -11.41731 -10.85092 -10.67300 -10.38723 -10.18605 -10.03097 -9.96467 -9.71934 -9.56341 -9.07871 -8.99001 -8.64396 -8.25427 -6.18704 -4.20742 0.84233 1.31763 2.43875 2.77415 3.09342 3.22502 3.34992 3.38308 3.48239 3.95656 4.07750 4.31058 4.83583 4.86525 5.12698 5.22103 5.31071 5.37194 5.49160 5.84721 6.00595 6.18410 6.25681 6.31205 6.36755 6.41114 6.46413 6.49650 6.56495 6.66849 6.89453 7.06706 7.40106 7.50575 7.55081 8.24043 8.27381 8.64060 8.88317 9.38617 10.93388 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027845 B = 0.004071 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.332194 B = 6876.554730 C = 7523.205136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.190 3.810 3 H 0.047 0.953 4 C -0.523 4.523 5 H 0.088 0.912 6 C 0.080 3.920 7 N -0.889 5.889 8 Si 0.879 3.121 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.262 1.262 12 O -0.335 6.335 13 C 0.496 3.504 14 O -0.513 6.513 15 C -0.094 4.094 16 C -0.075 4.075 17 C -0.113 4.113 18 C -0.121 4.121 19 C 0.145 3.855 20 N -0.684 5.684 21 C 0.700 3.300 22 N -0.863 5.863 23 O -0.565 6.565 24 C -0.062 4.062 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.269 0.731 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.407 0.593 33 H 0.397 0.603 34 H 0.419 0.581 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 -0.655 -26.005 26.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.137 3.863 3 H 0.065 0.935 4 C -0.561 4.561 5 H 0.106 0.894 6 C -0.123 4.123 7 N -0.526 5.526 8 Si 0.708 3.292 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.187 1.187 12 O -0.251 6.251 13 C 0.340 3.660 14 O -0.403 6.403 15 C -0.095 4.095 16 C -0.094 4.094 17 C -0.132 4.132 18 C -0.141 4.141 19 C 0.050 3.950 20 N -0.333 5.333 21 C 0.399 3.601 22 N -0.431 5.431 23 O -0.440 6.440 24 C -0.082 4.082 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.163 0.837 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.242 0.758 33 H 0.225 0.775 34 H 0.251 0.749 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.864 -0.011 -24.760 24.830 hybrid contribution -0.668 0.938 -0.623 1.309 sum 1.196 0.927 -25.383 25.428 Atomic orbital electron populations 1.22524 0.98434 1.01882 0.99851 1.20955 0.90493 0.94583 0.80304 0.93523 1.20776 1.33318 1.14808 0.87203 0.89417 1.24721 0.95675 0.96709 0.95236 1.69842 1.44780 1.40011 0.97970 0.86975 0.80713 0.83723 0.77817 1.19991 1.21680 1.18651 1.86550 1.75865 1.42244 1.20427 1.21051 0.75015 0.85256 0.84657 1.90776 1.48636 1.16216 1.84720 1.19198 1.04091 0.94122 0.92127 1.21613 0.95289 0.93664 0.98870 1.20925 1.00109 1.00140 0.92020 1.21015 1.01375 0.92096 0.99646 1.17204 1.00554 0.90220 0.86983 1.42466 1.70735 1.11676 1.08440 1.16004 0.78167 0.80974 0.84977 1.42952 1.75068 1.16622 1.08491 1.91098 1.54696 1.73109 1.25083 1.21252 0.94930 1.01532 0.90497 0.91720 0.94384 0.92523 0.92097 0.83700 0.84731 0.85389 0.75785 0.77507 0.74864 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 9.03 37.16 0.34 -3.66 16 2 C 0.19 5.00 2.16 -27.88 -0.06 4.94 16 3 H 0.05 1.30 6.22 -51.93 -0.32 0.98 16 4 C -0.52 -15.35 9.48 -34.44 -0.33 -15.67 16 5 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 6 C 0.08 2.33 5.45 -17.82 -0.10 2.24 16 7 N -0.89 -27.15 13.96 55.43 0.77 -26.38 16 8 Si 0.88 22.21 24.37 -169.99 -4.14 18.06 16 9 H -0.27 -6.58 6.87 56.52 0.39 -6.20 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.26 -6.59 6.53 56.52 0.37 -6.22 16 12 O -0.34 -8.02 9.11 -40.53 -0.37 -8.39 16 13 C 0.50 11.01 7.87 34.61 0.27 11.29 16 14 O -0.51 -12.68 15.60 -19.24 -0.30 -12.98 16 15 C -0.09 -1.66 5.87 -105.00 -0.62 -2.27 16 16 C -0.08 -1.09 9.61 -39.15 -0.38 -1.47 16 17 C -0.11 -1.23 10.02 -39.67 -0.40 -1.62 16 18 C -0.12 -1.19 9.95 -39.31 -0.39 -1.58 16 19 C 0.14 1.77 6.27 -83.73 -0.53 1.25 16 20 N -0.68 -6.15 5.35 -14.26 -0.08 -6.23 16 21 C 0.70 7.80 8.57 -86.93 -0.75 7.05 16 22 N -0.86 -5.02 8.88 27.63 0.25 -4.78 16 23 O -0.56 -9.60 14.87 5.28 0.08 -9.52 16 24 C -0.06 -1.01 8.20 -38.97 -0.32 -1.33 16 25 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 1.35 3.27 -51.93 -0.17 1.18 16 28 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.15 2.10 7.61 -52.49 -0.40 1.70 16 30 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 32 H 0.41 1.82 8.83 -40.82 -0.36 1.46 16 33 H 0.40 0.79 8.85 -40.82 -0.36 0.43 16 34 H 0.42 2.19 8.93 -40.82 -0.36 1.82 16 35 H 0.15 2.80 6.00 -52.49 -0.32 2.49 16 LS Contribution 303.61 15.07 4.58 4.58 Total: -1.00 -37.57 303.61 -6.05 -43.63 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -3.59 Total: 2.86 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -3.25 Total: -0.85 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.94 Total: -37.38 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.59 Total: -30.89 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.06 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -37.57 -6.05 -43.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.779 kcal (2) G-P(sol) polarization free energy of solvation -37.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds