Wall clock time and date at job start Tue Mar 31 2020 01:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47063 * 2 1 4 4 C 1.50699 * 109.46894 * 120.00301 * 2 1 3 5 5 H 1.07993 * 119.99829 * 119.99917 * 4 2 1 6 6 C 1.37873 * 120.00029 * 300.00084 * 4 2 1 7 7 N 1.31520 * 119.99941 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00141 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.46945 * 90.00383 * 8 6 4 10 10 H 1.48508 * 109.47170 * 210.00571 * 8 6 4 11 11 H 1.48501 * 109.46957 * 330.00109 * 8 6 4 12 12 O 1.45199 * 109.46687 * 240.00124 * 2 1 3 13 13 C 1.34713 * 116.99902 * 90.00867 * 12 2 1 14 14 O 1.21468 * 119.99628 * 359.97438 * 13 12 2 15 15 C 1.47740 * 119.99822 * 179.97438 * 13 12 2 16 16 C 1.39667 * 120.12025 * 359.72264 * 15 13 12 17 17 C 1.37956 * 119.99203 * 179.74309 * 16 15 13 18 18 C 1.38271 * 120.22582 * 0.53295 * 17 16 15 19 19 C 1.38946 * 120.23401 * 359.73773 * 18 17 16 20 20 N 1.39985 * 119.99606 * 180.02562 * 19 18 17 21 21 C 1.34769 * 120.00080 * 213.31022 * 20 19 18 22 22 N 1.34771 * 120.00172 * 185.31871 * 21 20 19 23 23 O 1.21596 * 120.00044 * 5.31700 * 21 20 19 24 24 C 1.38614 * 120.00966 * 359.97438 * 19 18 17 25 25 H 1.09002 * 109.47360 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47055 * 59.99907 * 1 2 3 27 27 H 1.09002 * 109.47460 * 300.00112 * 1 2 3 28 28 H 0.97004 * 119.99630 * 180.02562 * 7 6 4 29 29 H 1.08000 * 119.99870 * 359.97438 * 16 15 13 30 30 H 1.07999 * 119.89006 * 180.27003 * 17 16 15 31 31 H 1.07999 * 119.87877 * 179.76595 * 18 17 16 32 32 H 0.96995 * 119.99561 * 33.30685 * 20 19 18 33 33 H 0.96996 * 120.00187 * 359.97438 * 22 21 20 34 34 H 0.97004 * 120.00628 * 180.02562 * 22 21 20 35 35 H 1.07992 * 120.11706 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5885 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1379 -0.8593 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9952 3.9072 11 1 0.8492 2.1772 1.4924 12 8 2.0139 -0.6845 -1.1856 13 6 2.2179 0.0668 -2.2850 14 8 1.9971 1.2608 -2.2542 15 6 2.7101 -0.5617 -3.5282 16 6 2.9703 -1.9334 -3.5647 17 6 3.4248 -2.5184 -4.7284 18 6 3.6349 -1.7493 -5.8582 19 6 3.3845 -0.3829 -5.8308 20 7 3.5983 0.3909 -6.9775 21 6 4.0166 1.6668 -6.8612 22 7 4.1196 2.4447 -7.9569 23 8 4.3009 2.1161 -5.7677 24 6 2.9219 0.2140 -4.6684 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 1.9032 -0.5281 4.4375 29 1 2.8121 -2.5366 -2.6829 30 1 3.6213 -3.5800 -4.7560 31 1 3.9944 -2.2125 -6.7651 32 1 3.4455 0.0088 -7.8558 33 1 3.8931 2.0863 -8.8292 34 1 4.4210 3.3630 -7.8733 35 1 2.7263 1.2758 -4.6453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113695158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:23 Heat of formation + Delta-G solvation = -110.969153 kcal Electronic energy + Delta-G solvation = -20942.791483 eV Core-core repulsion = 17519.102153 eV Total energy + Delta-G solvation = -3423.689331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.87502 -41.25516 -39.48348 -37.70322 -35.92882 -35.31043 -34.67593 -32.87810 -32.08056 -30.39755 -27.39606 -25.96702 -24.26956 -23.30757 -22.09626 -21.57483 -19.76349 -19.39230 -18.78641 -18.30356 -17.83701 -17.24047 -16.96522 -16.61921 -16.47578 -16.01509 -15.73002 -15.23380 -15.10055 -14.64507 -14.57687 -14.34053 -13.99022 -13.67433 -13.49886 -12.89456 -12.85490 -12.69371 -12.26401 -11.83296 -11.73617 -11.68473 -11.48432 -11.34169 -11.26224 -10.85676 -10.76695 -10.06327 -9.20850 -8.46774 -6.55537 -0.34247 0.27833 1.20854 1.29539 1.39105 1.48159 1.63359 1.87404 2.03280 2.18054 2.80049 2.85736 3.47281 3.64901 3.90974 4.10298 4.16663 4.22187 4.33780 4.38006 4.43845 4.52713 4.69014 4.86419 5.09646 5.15110 5.29069 5.31329 5.37023 5.38355 5.55904 5.80554 5.88911 5.93389 6.10065 6.47551 6.79195 6.94991 7.08803 7.50910 8.69089 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027845 B = 0.004071 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.332194 B = 6876.554730 C = 7523.205136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.191 3.809 3 H 0.025 0.975 4 C -0.539 4.539 5 H 0.051 0.949 6 C 0.033 3.967 7 N -0.927 5.927 8 Si 0.938 3.062 9 H -0.246 1.246 10 H -0.280 1.280 11 H -0.265 1.265 12 O -0.342 6.342 13 C 0.491 3.509 14 O -0.550 6.550 15 C -0.127 4.127 16 C -0.084 4.084 17 C -0.097 4.097 18 C -0.089 4.089 19 C 0.146 3.854 20 N -0.665 5.665 21 C 0.693 3.307 22 N -0.835 5.835 23 O -0.630 6.630 24 C -0.083 4.083 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.276 0.724 29 H 0.137 0.863 30 H 0.179 0.821 31 H 0.184 0.816 32 H 0.433 0.567 33 H 0.420 0.580 34 H 0.424 0.576 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 -1.766 -29.445 29.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.136 3.864 3 H 0.043 0.957 4 C -0.577 4.577 5 H 0.069 0.931 6 C -0.167 4.167 7 N -0.565 5.565 8 Si 0.763 3.237 9 H -0.171 1.171 10 H -0.206 1.206 11 H -0.190 1.190 12 O -0.258 6.258 13 C 0.338 3.662 14 O -0.443 6.443 15 C -0.129 4.129 16 C -0.103 4.103 17 C -0.115 4.115 18 C -0.109 4.109 19 C 0.051 3.949 20 N -0.317 5.317 21 C 0.391 3.609 22 N -0.405 5.405 23 O -0.510 6.510 24 C -0.104 4.104 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.155 0.845 30 H 0.196 0.804 31 H 0.202 0.798 32 H 0.273 0.727 33 H 0.252 0.748 34 H 0.257 0.743 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.506 -1.152 -28.310 28.374 hybrid contribution -0.423 1.200 0.268 1.300 sum 1.083 0.048 -28.042 28.063 Atomic orbital electron populations 1.22404 0.95954 1.02918 1.00665 1.20699 0.92353 0.92953 0.80346 0.95737 1.20904 1.33494 1.14109 0.89178 0.93102 1.25514 0.96854 0.99713 0.94587 1.69947 1.46002 1.41807 0.98739 0.86018 0.80203 0.79634 0.77848 1.17072 1.20643 1.18961 1.86538 1.76319 1.42354 1.20553 1.21985 0.73953 0.85023 0.85229 1.90733 1.50589 1.17741 1.85270 1.19025 1.07691 0.95749 0.90390 1.21686 0.96012 0.92037 1.00550 1.21404 0.97546 1.02178 0.90395 1.21585 0.97782 0.90392 1.01123 1.17328 0.99475 0.91585 0.86507 1.42228 1.69798 1.10873 1.08763 1.16321 0.77898 0.81667 0.84999 1.42710 1.73308 1.16254 1.08237 1.91076 1.57560 1.74425 1.27976 1.21073 0.97119 1.00014 0.92162 0.90588 0.92779 0.92362 0.91409 0.84505 0.80388 0.79837 0.72686 0.74844 0.74275 0.86777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.66 9.03 71.98 0.65 -7.01 16 2 C 0.19 10.41 2.16 29.85 0.06 10.48 16 3 H 0.02 1.45 6.22 -2.39 -0.01 1.43 16 4 C -0.54 -33.01 9.48 25.60 0.24 -32.76 16 5 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 6 C 0.03 2.00 5.45 84.65 0.46 2.46 16 7 N -0.93 -57.89 13.96 21.45 0.30 -57.59 16 8 Si 0.94 46.00 24.37 68.60 1.67 47.67 16 9 H -0.25 -10.97 6.87 99.48 0.68 -10.29 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.26 -13.07 6.53 99.48 0.65 -12.42 16 12 O -0.34 -17.26 9.11 -56.23 -0.51 -17.77 16 13 C 0.49 23.17 7.87 70.33 0.55 23.73 16 14 O -0.55 -29.11 15.60 19.94 0.31 -28.80 16 15 C -0.13 -4.67 5.87 -20.11 -0.12 -4.79 16 16 C -0.08 -2.37 9.61 22.55 0.22 -2.16 16 17 C -0.10 -1.70 10.02 22.21 0.22 -1.48 16 18 C -0.09 -1.29 9.95 22.45 0.22 -1.07 16 19 C 0.15 3.25 6.27 38.10 0.24 3.49 16 20 N -0.67 -10.05 5.35 -317.28 -1.70 -11.75 16 21 C 0.69 14.61 8.57 179.06 1.53 16.14 16 22 N -0.84 -7.90 8.88 -184.75 -1.64 -9.54 16 23 O -0.63 -22.11 14.87 -4.02 -0.06 -22.17 16 24 C -0.08 -2.79 8.20 22.67 0.19 -2.61 16 25 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 26 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 27 H 0.06 2.70 3.27 -2.39 -0.01 2.70 16 28 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 29 H 0.14 4.01 7.61 -2.91 -0.02 3.99 16 30 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 31 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 32 H 0.43 1.84 8.83 -92.71 -0.82 1.02 16 33 H 0.42 0.21 8.85 -92.71 -0.82 -0.61 16 34 H 0.42 3.74 8.93 -92.71 -0.83 2.91 16 35 H 0.11 4.65 6.00 -2.91 -0.02 4.64 16 Total: -1.00 -89.61 303.61 1.48 -88.13 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -1.37 Total: 7.38 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 4.48 Total: 4.43 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -3.04 Total: -78.87 kcal Atomic # 8 Polarization: -68.48 SS G_CDS: -0.26 Total: -68.74 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.67 kcal Total: -89.61 1.48 -88.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.841 kcal (2) G-P(sol) polarization free energy of solvation -89.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds