Wall clock time and date at job start Tue Mar 31 2020 01:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.47153 * 2 1 4 4 C 1.50695 * 109.46765 * 239.99846 * 2 1 3 5 5 H 1.07997 * 120.00196 * 265.05557 * 4 2 1 6 6 C 1.37883 * 120.00122 * 85.05900 * 4 2 1 7 7 N 1.31511 * 120.00341 * 185.00679 * 6 4 2 8 8 Si 1.86801 * 119.99792 * 5.00383 * 6 4 2 9 9 H 1.48499 * 109.46875 * 94.95753 * 8 6 4 10 10 H 1.48500 * 109.47026 * 214.95392 * 8 6 4 11 11 H 1.48505 * 109.47319 * 334.95588 * 8 6 4 12 12 O 1.45195 * 109.47160 * 119.99940 * 2 1 3 13 13 C 1.34711 * 117.00200 * 269.99930 * 12 2 1 14 14 O 1.21470 * 119.99883 * 359.97438 * 13 12 2 15 15 C 1.47743 * 119.99934 * 179.97438 * 13 12 2 16 16 C 1.39661 * 120.11726 * 0.02562 * 15 13 12 17 17 C 1.37964 * 119.98892 * 179.97438 * 16 15 13 18 18 C 1.38270 * 120.22963 * 359.74699 * 17 16 15 19 19 C 1.38951 * 120.22793 * 0.51259 * 18 17 16 20 20 N 1.39984 * 119.99428 * 179.76695 * 19 18 17 21 21 C 1.34776 * 119.99820 * 214.82950 * 20 19 18 22 22 N 1.34774 * 119.99576 * 175.39659 * 21 20 19 23 23 O 1.21585 * 120.00057 * 355.40296 * 21 20 19 24 24 C 1.38618 * 120.01068 * 359.48356 * 19 18 17 25 25 H 1.08999 * 109.47012 * 185.00421 * 1 2 3 26 26 H 1.09003 * 109.46405 * 305.00321 * 1 2 3 27 27 H 1.08997 * 109.47136 * 64.99842 * 1 2 3 28 28 H 0.96995 * 120.00366 * 179.97438 * 7 6 4 29 29 H 1.07996 * 120.00858 * 359.97438 * 16 15 13 30 30 H 1.07998 * 119.88738 * 179.97438 * 17 16 15 31 31 H 1.07995 * 119.88721 * 180.25268 * 18 17 16 32 32 H 0.97001 * 119.99698 * 34.82361 * 20 19 18 33 33 H 0.97006 * 119.99349 * 180.02562 * 22 21 20 34 34 H 0.96998 * 120.00753 * 359.72494 * 22 21 20 35 35 H 1.08004 * 120.11407 * 180.23389 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2883 -1.7585 -1.1822 6 6 2.1651 -0.0224 -2.4179 7 7 2.5086 -0.6626 -3.5141 8 14 1.8570 1.8194 -2.4696 9 1 3.1457 2.5412 -2.3162 10 1 1.2387 2.1814 -3.7703 11 1 0.9419 2.1995 -1.3635 12 8 2.0141 -0.6844 1.1855 13 6 2.2180 0.0667 2.2850 14 8 1.9979 1.2609 2.2541 15 6 2.7092 -0.5620 3.5285 16 6 2.9636 -1.9347 3.5666 17 6 3.4228 -2.5189 4.7290 18 6 3.6377 -1.7491 5.8573 19 6 3.3827 -0.3834 5.8313 20 7 3.5974 0.3905 6.9778 21 6 2.7853 1.4310 7.2503 22 7 2.9338 2.1187 8.3998 23 8 1.9187 1.7493 6.4590 24 6 2.9212 0.2137 4.6686 25 1 -0.3633 -1.0237 0.0896 26 1 -0.3632 0.5895 0.8418 27 1 -0.3633 0.4343 -0.9313 28 1 2.6017 -0.1786 -4.3495 29 1 2.8008 -2.5388 2.6863 30 1 3.6185 -3.5807 4.7568 31 1 4.0012 -2.2115 6.7630 32 1 4.3306 0.1778 7.5762 33 1 2.3490 2.8674 8.5961 34 1 3.6225 1.8623 9.0330 35 1 2.7260 1.2757 4.6454 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113695159.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:25 Heat of formation + Delta-G solvation = -116.730992 kcal Electronic energy + Delta-G solvation = -20954.274957 eV Core-core repulsion = 17530.335774 eV Total energy + Delta-G solvation = -3423.939183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.85431 -41.21950 -39.46199 -37.63592 -35.91480 -35.21653 -34.67352 -32.82570 -32.02705 -30.37716 -27.45504 -25.89645 -24.25049 -23.12171 -22.11756 -21.51339 -19.84211 -19.37935 -18.86179 -18.27447 -17.80772 -17.08518 -16.89892 -16.54466 -16.48587 -15.91445 -15.77223 -15.21961 -14.88626 -14.61485 -14.57256 -14.36021 -13.98312 -13.51558 -13.17489 -12.96804 -12.84824 -12.72122 -12.52473 -11.96410 -11.70094 -11.56376 -11.49433 -11.26945 -11.19809 -10.88223 -10.76642 -10.04825 -9.22173 -8.47591 -6.56059 -0.32591 0.29374 1.22889 1.27866 1.39877 1.50978 1.66153 1.89514 2.04205 2.19474 2.80407 2.87734 3.48994 3.70546 3.93633 4.11886 4.18060 4.23347 4.38084 4.47668 4.53770 4.59389 4.78974 4.90328 5.13410 5.25724 5.31539 5.33342 5.37525 5.40700 5.57345 5.81165 5.90167 5.94115 6.12267 6.49830 6.82944 6.95525 7.10306 7.51706 8.67802 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026650 B = 0.004196 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.415346 B = 6672.203963 C = 7353.104948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.185 3.815 3 H 0.032 0.968 4 C -0.532 4.532 5 H 0.053 0.947 6 C 0.039 3.961 7 N -0.922 5.922 8 Si 0.921 3.079 9 H -0.270 1.270 10 H -0.261 1.261 11 H -0.252 1.252 12 O -0.347 6.347 13 C 0.490 3.510 14 O -0.553 6.553 15 C -0.129 4.129 16 C -0.083 4.083 17 C -0.099 4.099 18 C -0.087 4.087 19 C 0.143 3.857 20 N -0.666 5.666 21 C 0.693 3.307 22 N -0.835 5.835 23 O -0.630 6.630 24 C -0.084 4.084 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.277 0.723 29 H 0.137 0.863 30 H 0.179 0.821 31 H 0.184 0.816 32 H 0.432 0.568 33 H 0.424 0.576 34 H 0.419 0.581 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 -1.377 28.247 28.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.131 3.869 3 H 0.050 0.950 4 C -0.570 4.570 5 H 0.071 0.929 6 C -0.162 4.162 7 N -0.560 5.560 8 Si 0.744 3.256 9 H -0.195 1.195 10 H -0.185 1.185 11 H -0.175 1.175 12 O -0.262 6.262 13 C 0.337 3.663 14 O -0.446 6.446 15 C -0.131 4.131 16 C -0.102 4.102 17 C -0.117 4.117 18 C -0.108 4.108 19 C 0.048 3.952 20 N -0.317 5.317 21 C 0.391 3.609 22 N -0.405 5.405 23 O -0.510 6.510 24 C -0.104 4.104 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.155 0.845 30 H 0.196 0.804 31 H 0.202 0.798 32 H 0.273 0.727 33 H 0.257 0.743 34 H 0.251 0.749 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.720 -0.835 27.326 27.743 hybrid contribution 0.121 1.350 -0.283 1.384 sum 4.841 0.515 27.044 27.478 Atomic orbital electron populations 1.22228 0.95673 1.02021 1.00902 1.20830 0.92812 0.93008 0.80248 0.95011 1.20861 1.46205 0.97747 0.92138 0.92911 1.25511 0.93492 1.02617 0.94613 1.69941 1.47372 1.38283 1.00392 0.86130 0.79909 0.80386 0.79184 1.19534 1.18508 1.17550 1.86602 1.76211 1.42780 1.20656 1.21998 0.73945 0.85087 0.85290 1.90727 1.50735 1.17869 1.85280 1.19084 1.07670 0.95870 0.90466 1.21690 0.95775 0.92102 1.00613 1.21403 0.97634 1.02138 0.90517 1.21592 0.98851 0.89457 1.00861 1.17349 1.01674 0.91184 0.85019 1.42205 1.33706 1.30638 1.25155 1.16318 0.81296 0.80230 0.83022 1.42703 1.41548 1.36586 1.19670 1.91056 1.39042 1.70628 1.50260 1.21234 0.98032 1.00475 0.90703 0.91423 0.94117 0.91387 0.91393 0.84530 0.80410 0.79838 0.72743 0.74267 0.74860 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.20 9.12 71.99 0.66 -6.55 16 2 C 0.18 10.03 2.09 29.85 0.06 10.09 16 3 H 0.03 1.82 4.74 -2.39 -0.01 1.80 16 4 C -0.53 -32.06 9.25 25.60 0.24 -31.82 16 5 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 6 C 0.04 2.29 5.47 84.66 0.46 2.75 16 7 N -0.92 -56.84 13.96 21.45 0.30 -56.54 16 8 Si 0.92 45.63 26.34 68.60 1.81 47.44 16 9 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 10 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.25 -12.25 5.97 99.48 0.59 -11.65 16 12 O -0.35 -17.57 9.11 -56.21 -0.51 -18.08 16 13 C 0.49 23.32 7.87 70.34 0.55 23.88 16 14 O -0.55 -29.51 15.60 19.93 0.31 -29.19 16 15 C -0.13 -4.81 5.87 -20.11 -0.12 -4.93 16 16 C -0.08 -2.37 9.61 22.55 0.22 -2.15 16 17 C -0.10 -1.75 10.02 22.21 0.22 -1.53 16 18 C -0.09 -1.29 9.96 22.45 0.22 -1.07 16 19 C 0.14 3.22 6.29 38.10 0.24 3.46 16 20 N -0.67 -10.20 5.34 -317.28 -1.70 -11.90 16 21 C 0.69 14.51 8.68 179.06 1.55 16.06 16 22 N -0.84 -7.70 8.88 -184.75 -1.64 -9.34 16 23 O -0.63 -21.83 14.61 -3.98 -0.06 -21.89 16 24 C -0.08 -2.87 8.24 22.67 0.19 -2.68 16 25 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 3.15 6.89 -2.39 -0.02 3.14 16 28 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 29 H 0.14 4.04 7.61 -2.91 -0.02 4.02 16 30 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 32 H 0.43 2.03 8.84 -92.71 -0.82 1.21 16 33 H 0.42 3.60 8.93 -92.70 -0.83 2.77 16 34 H 0.42 0.15 8.85 -92.71 -0.82 -0.67 16 35 H 0.12 4.92 5.81 -2.91 -0.02 4.90 16 Total: -1.00 -88.28 306.93 1.60 -86.68 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -1.41 Total: 7.32 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 4.50 Total: 5.51 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -3.04 Total: -77.78 kcal Atomic # 8 Polarization: -68.90 SS G_CDS: -0.26 Total: -69.16 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.81 Total: 47.44 kcal Total: -88.28 1.60 -86.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695159.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.055 kcal (2) G-P(sol) polarization free energy of solvation -88.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds