Wall clock time and date at job start Tue Mar 31 2020 00:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.98999 * 2 1 4 4 O 1.43739 * 109.88243 * 121.08348 * 2 1 3 5 5 C 1.44383 * 106.97729 * 145.93640 * 4 2 1 6 6 C 1.54989 * 103.48976 * 319.94114 * 5 4 2 7 7 C 1.54100 * 109.87806 * 238.91809 * 2 1 3 8 8 H 1.09002 * 110.48859 * 119.86613 * 7 2 1 9 9 N 1.46496 * 110.48840 * 357.35080 * 7 2 1 10 10 S 1.65596 * 120.00174 * 146.84522 * 9 7 2 11 11 O 1.42105 * 106.40325 * 178.54028 * 10 9 7 12 12 O 1.42101 * 106.40185 * 311.46097 * 10 9 7 13 13 N 1.65602 * 107.21874 * 65.00387 * 10 9 7 14 14 C 1.46505 * 119.99578 * 270.00193 * 13 10 9 15 15 C 1.46493 * 120.00331 * 89.99805 * 13 10 9 16 16 C 1.50707 * 109.47183 * 95.00080 * 15 13 10 17 17 H 1.07996 * 119.99351 * 0.02562 * 16 15 13 18 18 C 1.37868 * 120.00049 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00347 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99991 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47160 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47042 * 120.00130 * 20 18 16 23 23 H 1.48501 * 109.47611 * 240.00437 * 20 18 16 24 24 H 1.09002 * 109.46993 * 181.09217 * 1 2 3 25 25 H 1.09005 * 109.47233 * 301.08105 * 1 2 3 26 26 H 1.08990 * 109.47740 * 61.08300 * 1 2 3 27 27 H 1.08999 * 110.61256 * 78.44204 * 5 4 2 28 28 H 1.08992 * 110.61899 * 201.43628 * 5 4 2 29 29 H 1.08999 * 110.90787 * 278.82230 * 6 5 4 30 30 H 1.09005 * 110.90662 * 155.21760 * 6 5 4 31 31 H 0.97009 * 120.00067 * 326.84823 * 9 7 2 32 32 H 1.09000 * 109.47016 * 89.99749 * 14 13 10 33 33 H 1.09005 * 109.46872 * 209.99996 * 14 13 10 34 34 H 1.09002 * 109.47252 * 329.99390 * 14 13 10 35 35 H 1.08997 * 109.47246 * 214.99776 * 15 13 10 36 36 H 1.09001 * 109.47050 * 335.00235 * 15 13 10 37 37 H 0.97001 * 120.00692 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6979 1.1576 5 6 3.2380 -1.3641 0.7646 6 6 2.9196 -1.8914 -0.6576 7 6 2.0539 -0.7482 -1.2411 8 1 2.6618 -0.0858 -1.8575 9 7 0.9392 -1.2921 -2.0205 10 16 1.0521 -1.3906 -3.6697 11 8 -0.1581 -1.9837 -4.1201 12 8 1.5093 -0.1217 -4.1171 13 7 2.2590 -2.4708 -4.0147 14 6 3.6392 -2.0034 -4.1658 15 6 1.9464 -3.8937 -4.1689 16 6 1.7402 -4.2075 -5.6284 17 1 1.8330 -3.4253 -6.3672 18 6 1.4339 -5.4933 -6.0204 19 7 1.3213 -6.4460 -5.1208 20 14 1.1775 -5.8821 -7.8294 21 1 1.3583 -4.6458 -8.6320 22 1 2.1672 -6.9014 -8.2617 23 1 -0.1961 -6.4084 -8.0329 24 1 -0.3633 -1.0275 0.0196 25 1 -0.3634 0.5306 0.8802 26 1 -0.3634 0.4969 -0.8994 27 1 4.0685 -0.6588 0.7355 28 1 3.4586 -2.1906 1.4400 29 1 2.3540 -2.8220 -0.6098 30 1 3.8332 -2.0223 -1.2375 31 1 0.1347 -1.5945 -1.5706 32 1 4.1402 -2.0312 -3.1981 33 1 4.1670 -2.6499 -4.8670 34 1 3.6373 -0.9814 -4.5447 35 1 2.7720 -4.4910 -3.7820 36 1 1.0375 -4.1281 -3.6148 37 1 1.1055 -7.3506 -5.3966 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121571157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:54 Heat of formation + Delta-G solvation = -115.769957 kcal Electronic energy + Delta-G solvation = -21236.873533 eV Core-core repulsion = 17948.419976 eV Total energy + Delta-G solvation = -3288.453558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.85570 -36.64333 -35.53793 -35.20105 -34.92581 -32.46376 -31.57115 -29.89149 -27.80299 -25.83683 -25.09284 -22.31855 -22.27127 -20.79300 -19.18470 -17.58102 -16.86018 -16.53909 -16.25533 -15.91116 -15.72490 -15.19996 -14.64986 -14.35249 -13.61734 -13.48593 -13.06003 -12.94568 -12.66795 -12.39087 -12.33543 -12.17194 -11.66663 -11.54894 -11.45062 -11.28968 -11.14851 -11.11676 -11.08767 -10.92497 -10.72081 -10.53178 -10.07244 -9.94118 -9.76104 -9.31396 -8.46819 -8.09095 -6.08454 -4.12443 1.19250 3.29769 3.37569 3.41011 3.44799 3.71325 4.09833 4.41975 4.44647 4.62737 4.80242 4.90609 5.01355 5.11667 5.22902 5.26899 5.31727 5.46715 5.57854 5.62739 5.65421 5.78338 5.87683 6.04274 6.06944 6.16841 6.29031 6.52349 6.76412 7.05064 7.23100 7.39260 7.58556 7.89200 8.18340 8.90415 9.53114 11.00166 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028391 B = 0.005460 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.978359 B = 5127.276916 C = 5391.839784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.071 3.929 3 H 0.077 0.923 4 O -0.374 6.374 5 C 0.048 3.952 6 C -0.176 4.176 7 C 0.124 3.876 8 H 0.104 0.896 9 N -1.124 6.124 10 S 2.780 3.220 11 O -0.963 6.963 12 O -0.999 6.999 13 N -0.994 5.994 14 C 0.093 3.907 15 C 0.258 3.742 16 C -0.529 4.529 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.282 1.282 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.415 0.585 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.148 10.573 11.300 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.011 3.989 3 H 0.095 0.905 4 O -0.293 6.293 5 C -0.029 4.029 6 C -0.215 4.215 7 C 0.015 3.985 8 H 0.122 0.878 9 N -0.884 5.884 10 S 2.787 3.213 11 O -0.946 6.946 12 O -0.982 6.982 13 N -0.837 5.837 14 C -0.054 4.054 15 C 0.136 3.864 16 C -0.568 4.568 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.725 3.275 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.208 1.208 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.251 0.749 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.632 10.918 10.787 15.773 hybrid contribution -0.081 -0.814 -0.731 1.097 sum 3.552 10.105 10.057 14.692 Atomic orbital electron populations 1.21878 0.93516 1.02908 1.02602 1.22915 0.95831 0.95625 0.84507 0.90523 1.88900 1.39881 1.67733 1.32834 1.23510 0.87535 0.96406 0.95433 1.23755 1.01311 0.99963 0.96479 1.22065 0.87752 0.94740 0.93914 0.87844 1.56479 1.25198 1.78844 1.27899 1.02008 0.73598 0.73039 0.72647 1.93650 1.44715 1.77731 1.78537 1.93522 1.82701 1.41953 1.80029 1.57566 1.19408 1.22197 1.84524 1.21400 0.83241 1.00110 1.00604 1.19038 0.96739 0.73267 0.97309 1.21535 1.47946 0.94585 0.92751 0.92134 1.24930 0.95009 0.96108 0.97997 1.69923 1.48668 1.01667 1.33258 0.86455 0.77876 0.78323 0.84866 1.19653 1.20974 1.20790 0.91554 0.91769 0.90668 0.92016 0.88759 0.89054 0.89258 0.74885 0.94369 0.90334 0.91623 0.94723 0.94490 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.35 37.16 0.31 -1.27 16 2 C 0.07 0.78 4.06 -26.16 -0.11 0.67 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 4 O -0.37 -4.47 11.19 -35.23 -0.39 -4.86 16 5 C 0.05 0.47 7.72 38.21 0.29 0.76 16 6 C -0.18 -1.95 6.88 -24.72 -0.17 -2.12 16 7 C 0.12 1.50 3.70 -66.40 -0.25 1.25 16 8 H 0.10 1.20 7.57 -51.93 -0.39 0.81 16 9 N -1.12 -16.10 4.84 -3.59 -0.02 -16.12 16 10 S 2.78 53.15 6.08 -107.50 -0.65 52.50 16 11 O -0.96 -22.59 17.11 -57.17 -0.98 -23.57 16 12 O -1.00 -19.99 16.12 -57.17 -0.92 -20.92 16 13 N -0.99 -19.74 3.23 -123.05 -0.40 -20.13 16 14 C 0.09 1.51 10.68 59.85 0.64 2.15 16 15 C 0.26 6.31 5.08 -5.19 -0.03 6.28 16 16 C -0.53 -14.69 9.38 -34.44 -0.32 -15.02 16 17 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 20 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H 0.07 0.70 6.77 -51.93 -0.35 0.35 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.76 7.88 -51.93 -0.41 0.36 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 30 H 0.09 0.90 6.58 -51.93 -0.34 0.56 16 31 H 0.41 5.44 6.42 -34.47 -0.22 5.22 16 32 H 0.04 0.49 6.58 -51.93 -0.34 0.15 16 33 H 0.08 1.31 8.07 -51.93 -0.42 0.90 16 34 H 0.07 1.01 7.02 -51.93 -0.36 0.65 16 35 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 36 H 0.04 0.96 7.61 -51.93 -0.40 0.57 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -33.59 313.37 -7.96 -41.55 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.31 Total: 0.95 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 0.28 Total: -5.65 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.32 Total: -61.47 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -2.29 Total: -49.34 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 53.15 SS G_CDS: -0.65 Total: 52.50 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.59 -7.96 -41.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121571157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.218 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds