Wall clock time and date at job start Tue Mar 31 2020 00:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.98999 * 2 1 4 4 O 1.43739 * 109.88243 * 121.08348 * 2 1 3 5 5 C 1.44383 * 106.97729 * 145.93640 * 4 2 1 6 6 C 1.54989 * 103.48976 * 319.94114 * 5 4 2 7 7 C 1.54100 * 109.87806 * 238.91809 * 2 1 3 8 8 H 1.09002 * 110.48859 * 119.86613 * 7 2 1 9 9 N 1.46496 * 110.48840 * 357.35080 * 7 2 1 10 10 S 1.65596 * 120.00174 * 146.84522 * 9 7 2 11 11 O 1.42105 * 106.40325 * 178.54028 * 10 9 7 12 12 O 1.42101 * 106.40185 * 311.46097 * 10 9 7 13 13 N 1.65602 * 107.21874 * 65.00387 * 10 9 7 14 14 C 1.46505 * 119.99578 * 270.00193 * 13 10 9 15 15 C 1.46493 * 120.00331 * 89.99805 * 13 10 9 16 16 C 1.50707 * 109.47183 * 95.00080 * 15 13 10 17 17 H 1.07996 * 119.99351 * 0.02562 * 16 15 13 18 18 C 1.37868 * 120.00049 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00347 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99991 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47160 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47042 * 120.00130 * 20 18 16 23 23 H 1.48501 * 109.47611 * 240.00437 * 20 18 16 24 24 H 1.09002 * 109.46993 * 181.09217 * 1 2 3 25 25 H 1.09005 * 109.47233 * 301.08105 * 1 2 3 26 26 H 1.08990 * 109.47740 * 61.08300 * 1 2 3 27 27 H 1.08999 * 110.61256 * 78.44204 * 5 4 2 28 28 H 1.08992 * 110.61899 * 201.43628 * 5 4 2 29 29 H 1.08999 * 110.90787 * 278.82230 * 6 5 4 30 30 H 1.09005 * 110.90662 * 155.21760 * 6 5 4 31 31 H 0.97009 * 120.00067 * 326.84823 * 9 7 2 32 32 H 1.09000 * 109.47016 * 89.99749 * 14 13 10 33 33 H 1.09005 * 109.46872 * 209.99996 * 14 13 10 34 34 H 1.09002 * 109.47252 * 329.99390 * 14 13 10 35 35 H 1.08997 * 109.47246 * 214.99776 * 15 13 10 36 36 H 1.09001 * 109.47050 * 335.00235 * 15 13 10 37 37 H 0.97001 * 120.00692 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6979 1.1576 5 6 3.2380 -1.3641 0.7646 6 6 2.9196 -1.8914 -0.6576 7 6 2.0539 -0.7482 -1.2411 8 1 2.6618 -0.0858 -1.8575 9 7 0.9392 -1.2921 -2.0205 10 16 1.0521 -1.3906 -3.6697 11 8 -0.1581 -1.9837 -4.1201 12 8 1.5093 -0.1217 -4.1171 13 7 2.2590 -2.4708 -4.0147 14 6 3.6392 -2.0034 -4.1658 15 6 1.9464 -3.8937 -4.1689 16 6 1.7402 -4.2075 -5.6284 17 1 1.8330 -3.4253 -6.3672 18 6 1.4339 -5.4933 -6.0204 19 7 1.3213 -6.4460 -5.1208 20 14 1.1775 -5.8821 -7.8294 21 1 1.3583 -4.6458 -8.6320 22 1 2.1672 -6.9014 -8.2617 23 1 -0.1961 -6.4084 -8.0329 24 1 -0.3633 -1.0275 0.0196 25 1 -0.3634 0.5306 0.8802 26 1 -0.3634 0.4969 -0.8994 27 1 4.0685 -0.6588 0.7355 28 1 3.4586 -2.1906 1.4400 29 1 2.3540 -2.8220 -0.6098 30 1 3.8332 -2.0223 -1.2375 31 1 0.1347 -1.5945 -1.5706 32 1 4.1402 -2.0312 -3.1981 33 1 4.1670 -2.6499 -4.8670 34 1 3.6373 -0.9814 -4.5447 35 1 2.7720 -4.4910 -3.7820 36 1 1.0375 -4.1281 -3.6148 37 1 1.1055 -7.3506 -5.3966 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121571157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:53 Heat of formation + Delta-G solvation = -142.058991 kcal Electronic energy + Delta-G solvation = -21238.013511 eV Core-core repulsion = 17948.419976 eV Total energy + Delta-G solvation = -3289.593536 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.74156 -38.28052 -37.21496 -36.86057 -35.99211 -34.50621 -32.40686 -30.91263 -29.65445 -26.79117 -26.67648 -24.20370 -23.10346 -21.78071 -20.51858 -19.12252 -18.45346 -18.33316 -17.54308 -17.01558 -16.79866 -16.57571 -16.18103 -15.55501 -15.16325 -15.00106 -14.20902 -14.05760 -13.97139 -13.92707 -13.54063 -13.35210 -13.21716 -13.13703 -13.01546 -12.93534 -12.74067 -12.47176 -12.38823 -12.14461 -12.04869 -11.96165 -11.81387 -11.69579 -10.86241 -10.60343 -10.36537 -9.76701 -8.20880 -6.32464 -0.32654 1.38098 1.40881 1.52148 2.01332 2.39973 2.61666 2.90908 3.10383 3.39812 3.61444 3.73983 3.95163 4.04683 4.16385 4.26722 4.32390 4.44080 4.62169 4.70799 4.77438 4.83921 4.90301 5.02744 5.05815 5.14982 5.21661 5.22172 5.27165 5.47262 5.70224 5.84546 5.95410 6.07111 6.12846 6.76508 7.36696 8.86684 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028391 B = 0.005460 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.978359 B = 5127.276916 C = 5391.839784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.072 3.928 3 H 0.095 0.905 4 O -0.391 6.391 5 C 0.049 3.951 6 C -0.177 4.177 7 C 0.114 3.886 8 H 0.113 0.887 9 N -1.110 6.110 10 S 2.797 3.203 11 O -1.012 7.012 12 O -1.007 7.007 13 N -1.000 6.000 14 C 0.085 3.915 15 C 0.275 3.725 16 C -0.549 4.549 17 H 0.051 0.949 18 C 0.012 3.988 19 N -0.924 5.924 20 Si 0.956 3.044 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.280 1.280 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.421 0.579 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.030 0.970 36 H 0.014 0.986 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.228 11.433 11.780 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.012 3.988 3 H 0.113 0.887 4 O -0.310 6.310 5 C -0.027 4.027 6 C -0.216 4.216 7 C 0.007 3.993 8 H 0.131 0.869 9 N -0.874 5.874 10 S 2.805 3.195 11 O -0.996 6.996 12 O -0.990 6.990 13 N -0.841 5.841 14 C -0.060 4.060 15 C 0.151 3.849 16 C -0.588 4.588 17 H 0.069 0.931 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.781 3.219 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.206 1.206 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.259 0.741 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.032 0.968 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.736 11.795 11.270 16.987 hybrid contribution -0.387 -1.019 -0.793 1.348 sum 4.348 10.776 10.477 15.646 Atomic orbital electron populations 1.21920 0.93496 1.02744 1.03207 1.22981 0.96012 0.96175 0.83599 0.88691 1.88887 1.40892 1.68070 1.33197 1.23660 0.87415 0.97161 0.94478 1.23754 1.01299 0.98802 0.97749 1.22385 0.87142 0.95492 0.94323 0.86918 1.56052 1.26356 1.78745 1.26242 1.01240 0.72377 0.72429 0.73435 1.93580 1.47109 1.78569 1.80308 1.93505 1.82632 1.41958 1.80922 1.57423 1.21164 1.20273 1.85289 1.21650 0.81465 1.00147 1.02728 1.18568 0.95467 0.75650 0.95201 1.21887 1.47977 0.94621 0.94307 0.93062 1.25723 0.94795 0.96104 1.02110 1.70006 1.49317 1.02064 1.35044 0.85546 0.78007 0.78322 0.80055 1.19477 1.19483 1.20617 0.92139 0.90646 0.90615 0.89779 0.87734 0.90753 0.88079 0.74064 0.90580 0.91169 0.90675 0.95150 0.96752 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 8.35 71.98 0.60 -2.42 16 2 C 0.07 1.42 4.06 30.97 0.13 1.54 16 3 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 4 O -0.39 -8.43 11.19 -148.98 -1.67 -10.09 16 5 C 0.05 0.82 7.72 72.66 0.56 1.38 16 6 C -0.18 -3.55 6.88 31.89 0.22 -3.33 16 7 C 0.11 2.53 3.70 45.98 0.17 2.70 16 8 H 0.11 2.31 7.57 -2.39 -0.02 2.30 16 9 N -1.11 -30.91 4.84 -165.27 -0.80 -31.71 16 10 S 2.80 106.31 6.08 -56.49 -0.34 105.97 16 11 O -1.01 -48.45 17.11 -128.00 -2.19 -50.64 16 12 O -1.01 -39.24 16.12 -128.00 -2.06 -41.30 16 13 N -1.00 -39.34 3.23 -543.21 -1.75 -41.09 16 14 C 0.09 2.63 10.68 127.77 1.36 3.99 16 15 C 0.27 13.60 5.08 85.64 0.43 14.03 16 16 C -0.55 -30.82 9.38 25.60 0.24 -30.58 16 17 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 18 C 0.01 0.68 5.46 84.65 0.46 1.14 16 19 N -0.92 -53.92 13.29 21.44 0.28 -53.64 16 20 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 24 H 0.06 1.22 6.77 -2.39 -0.02 1.21 16 25 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.07 1.44 7.88 -2.39 -0.02 1.42 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.77 8.07 -2.39 -0.02 1.75 16 30 H 0.10 1.76 6.58 -2.38 -0.02 1.74 16 31 H 0.42 10.92 6.42 -96.74 -0.62 10.30 16 32 H 0.08 1.75 6.58 -2.39 -0.02 1.73 16 33 H 0.07 2.28 8.07 -2.38 -0.02 2.26 16 34 H 0.07 2.17 7.02 -2.39 -0.02 2.16 16 35 H 0.03 1.52 8.11 -2.39 -0.02 1.50 16 36 H 0.01 0.78 7.61 -2.39 -0.02 0.76 16 37 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -71.49 313.37 -1.87 -73.37 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.45 Total: 14.11 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.18 Total: -11.53 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -2.27 Total: -126.44 kcal Atomic # 8 Polarization: -96.12 SS G_CDS: -5.92 Total: -102.04 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 106.31 SS G_CDS: -0.34 Total: 105.97 kcal Total: -71.49 -1.87 -73.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121571157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.693 kcal (2) G-P(sol) polarization free energy of solvation -71.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds