Wall clock time and date at job start Tue Mar 31 2020 00:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.33337 * 2 1 4 4 O 1.44426 * 110.46558 * 237.69166 * 2 1 3 5 5 C 1.44428 * 105.27187 * 200.60791 * 4 2 1 6 6 C 1.54475 * 104.80609 * 40.51091 * 5 4 2 7 7 C 1.54477 * 110.37369 * 122.25137 * 2 1 3 8 8 H 1.09002 * 110.50987 * 24.27640 * 7 2 1 9 9 N 1.46499 * 110.51256 * 261.70327 * 7 2 1 10 10 S 1.65604 * 120.00151 * 146.90443 * 9 7 2 11 11 O 1.42097 * 106.40233 * 178.53858 * 10 9 7 12 12 O 1.42094 * 106.39985 * 311.46320 * 10 9 7 13 13 N 1.65604 * 107.21530 * 64.99966 * 10 9 7 14 14 C 1.46500 * 119.99778 * 269.99683 * 13 10 9 15 15 C 1.46497 * 119.99994 * 90.00438 * 13 10 9 16 16 C 1.50699 * 109.47459 * 94.99549 * 15 13 10 17 17 H 1.08000 * 119.99687 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00136 * 179.97438 * 16 15 13 19 19 N 1.31509 * 119.99768 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99876 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47213 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46931 * 120.00019 * 20 18 16 23 23 H 1.48495 * 109.46922 * 240.00313 * 20 18 16 24 24 H 1.09004 * 109.47399 * 297.74876 * 1 2 3 25 25 H 1.09003 * 109.47628 * 57.74856 * 1 2 3 26 26 H 1.08996 * 109.47073 * 177.74864 * 1 2 3 27 27 H 1.08998 * 110.36510 * 159.34030 * 5 4 2 28 28 H 1.08999 * 110.37302 * 281.56747 * 5 4 2 29 29 H 1.08998 * 110.51202 * 217.37593 * 6 5 4 30 30 H 1.08997 * 110.51359 * 94.66389 * 6 5 4 31 31 H 0.96999 * 119.99733 * 326.90165 * 9 7 2 32 32 H 1.09005 * 109.46942 * 90.00568 * 14 13 10 33 33 H 1.08995 * 109.46968 * 210.00097 * 14 13 10 34 34 H 1.08997 * 109.47662 * 330.00760 * 14 13 10 35 35 H 1.08998 * 109.46797 * 214.99793 * 15 13 10 36 36 H 1.09004 * 109.47022 * 334.99270 * 15 13 10 37 37 H 0.97009 * 119.99472 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0349 -0.7232 -1.1436 5 6 3.3898 -1.0845 -0.7974 6 6 3.3194 -1.5027 0.6880 7 6 2.0678 -0.7728 1.2247 8 1 1.3283 -1.4917 1.5775 9 7 2.4321 0.1555 2.2979 10 16 2.2464 -0.2948 3.8807 11 8 2.7133 0.7942 4.6651 12 8 0.9345 -0.8287 3.9947 13 7 3.2885 -1.5516 4.1583 14 6 2.8464 -2.9313 3.9408 15 6 4.6522 -1.2838 4.6214 16 6 4.7012 -1.3835 6.1243 17 1 3.8060 -1.6229 6.6789 18 6 5.8890 -1.1701 6.7910 19 7 6.9791 -0.8791 6.1155 20 14 5.9497 -1.2945 8.6539 21 1 4.5995 -1.6321 9.1718 22 1 6.9102 -2.3563 9.0480 23 1 6.3878 0.0053 9.2227 24 1 -0.3634 0.4785 0.9095 25 1 -0.3634 0.5484 -0.8691 26 1 -0.3633 -1.0268 -0.0404 27 1 3.7283 -1.9193 -1.4110 28 1 4.0540 -0.2292 -0.9215 29 1 4.2115 -1.1727 1.2203 30 1 3.1988 -2.5824 0.7756 31 1 2.7821 1.0338 2.0814 32 1 3.0578 -3.2226 2.9119 33 1 3.3779 -3.5949 4.6228 34 1 1.7746 -3.0029 4.1257 35 1 5.3338 -2.0147 4.1863 36 1 4.9501 -0.2813 4.3138 37 1 7.8147 -0.7286 6.5847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121571320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:56 Heat of formation + Delta-G solvation = -123.347984 kcal Electronic energy + Delta-G solvation = -21133.588180 eV Core-core repulsion = 17844.806014 eV Total energy + Delta-G solvation = -3288.782166 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.76691 -36.65419 -35.54404 -35.21202 -34.79395 -32.46444 -31.63036 -30.16864 -27.80571 -25.47112 -25.07560 -22.37919 -22.23691 -21.13731 -19.01220 -17.39265 -17.09339 -16.55281 -16.35023 -15.81833 -15.61169 -15.27023 -14.51269 -14.12268 -13.71048 -13.46849 -13.34117 -12.93520 -12.55779 -12.36859 -12.23056 -12.17190 -11.93584 -11.65692 -11.48240 -11.33702 -11.17791 -11.11838 -11.10336 -10.85315 -10.72751 -10.54146 -10.06754 -9.95097 -9.76869 -9.36332 -8.47592 -8.10039 -6.09413 -4.13232 1.17292 3.29339 3.36744 3.37333 3.43097 3.78891 4.10488 4.42440 4.47025 4.51430 4.83647 4.91125 5.01247 5.10453 5.23050 5.26274 5.39995 5.47570 5.58022 5.65788 5.68848 5.82007 5.87256 5.99756 6.04980 6.09318 6.27045 6.52224 6.70257 7.02996 7.21340 7.38157 7.57551 7.88435 8.17477 8.89634 9.52361 10.99235 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.005350 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.951862 B = 5232.869086 C = 5616.322484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 H 0.075 0.925 4 O -0.372 6.372 5 C 0.047 3.953 6 C -0.178 4.178 7 C 0.125 3.875 8 H 0.105 0.895 9 N -1.125 6.125 10 S 2.781 3.219 11 O -0.962 6.962 12 O -0.997 6.997 13 N -0.994 5.994 14 C 0.093 3.907 15 C 0.258 3.742 16 C -0.529 4.529 17 H 0.061 0.939 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.282 1.282 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.412 0.588 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 -0.938 -13.503 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.010 3.990 3 H 0.093 0.907 4 O -0.291 6.291 5 C -0.030 4.030 6 C -0.217 4.217 7 C 0.016 3.984 8 H 0.123 0.877 9 N -0.883 5.883 10 S 2.789 3.211 11 O -0.946 6.946 12 O -0.980 6.980 13 N -0.837 5.837 14 C -0.053 4.053 15 C 0.136 3.864 16 C -0.568 4.568 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.208 1.208 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.246 0.754 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.524 -0.745 -13.000 15.563 hybrid contribution 0.896 0.175 0.862 1.256 sum -7.627 -0.570 -12.138 14.347 Atomic orbital electron populations 1.21821 0.92598 1.03332 1.02757 1.23216 0.95783 0.95587 0.84381 0.90717 1.89142 1.27341 1.74690 1.37885 1.23381 0.84402 1.00089 0.95118 1.23541 0.99751 1.01867 0.96556 1.22106 0.96234 0.91481 0.88578 0.87722 1.56348 1.81736 1.25340 1.24837 1.01978 0.73226 0.73488 0.72454 1.93649 1.81588 1.53342 1.66038 1.93525 1.38022 1.80404 1.86079 1.57563 1.28383 1.17399 1.80346 1.21388 0.99940 0.83824 1.00188 1.19045 0.75413 0.97114 0.94824 1.21534 0.95386 1.47982 0.91905 0.92115 1.24930 0.95431 0.94867 0.98797 1.69926 0.99954 1.47964 1.35688 0.86454 0.78126 0.77726 0.85219 1.19639 1.20968 1.20791 0.90612 0.91755 0.91457 0.88950 0.92103 0.88785 0.89741 0.75430 0.94321 0.90329 0.91608 0.94706 0.94501 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.52 37.16 0.35 -1.14 16 2 C 0.07 0.77 3.64 -25.96 -0.09 0.68 16 3 H 0.07 0.77 7.84 -51.93 -0.41 0.36 16 4 O -0.37 -4.43 11.35 -35.23 -0.40 -4.83 16 5 C 0.05 0.48 7.63 37.93 0.29 0.77 16 6 C -0.18 -1.99 6.65 -25.16 -0.17 -2.16 16 7 C 0.12 1.54 3.34 -66.36 -0.22 1.31 16 8 H 0.10 1.32 7.30 -51.93 -0.38 0.94 16 9 N -1.12 -15.77 5.54 -3.56 -0.02 -15.79 16 10 S 2.78 52.94 6.08 -107.50 -0.65 52.28 16 11 O -0.96 -22.43 17.11 -57.17 -0.98 -23.40 16 12 O -1.00 -19.97 16.12 -57.17 -0.92 -20.89 16 13 N -0.99 -19.71 3.23 -123.06 -0.40 -20.11 16 14 C 0.09 1.53 10.68 59.85 0.64 2.17 16 15 C 0.26 6.26 5.08 -5.20 -0.03 6.23 16 16 C -0.53 -14.64 9.38 -34.44 -0.32 -14.96 16 17 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.90 -25.82 13.29 55.43 0.74 -25.09 16 20 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.15 7.97 -51.93 -0.41 0.73 16 30 H 0.08 0.87 7.57 -51.93 -0.39 0.48 16 31 H 0.41 5.02 8.64 -34.47 -0.30 4.72 16 32 H 0.04 0.51 7.33 -51.93 -0.38 0.13 16 33 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 34 H 0.07 1.03 7.02 -51.93 -0.36 0.66 16 35 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 36 H 0.04 0.95 7.61 -51.93 -0.40 0.56 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 319.24 15.07 4.81 4.81 Total: -1.00 -33.29 319.24 -8.02 -41.31 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.53 Total: 0.49 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 0.35 Total: -5.46 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.32 Total: -60.98 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -2.30 Total: -49.12 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 52.94 SS G_CDS: -0.65 Total: 52.28 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.29 -8.02 -41.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121571320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.037 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds