Wall clock time and date at job start Tue Mar 31 2020 00:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.33337 * 2 1 4 4 O 1.44426 * 110.46558 * 237.69166 * 2 1 3 5 5 C 1.44428 * 105.27187 * 200.60791 * 4 2 1 6 6 C 1.54475 * 104.80609 * 40.51091 * 5 4 2 7 7 C 1.54477 * 110.37369 * 122.25137 * 2 1 3 8 8 H 1.09002 * 110.50987 * 24.27640 * 7 2 1 9 9 N 1.46499 * 110.51256 * 261.70327 * 7 2 1 10 10 S 1.65604 * 120.00151 * 146.90443 * 9 7 2 11 11 O 1.42097 * 106.40233 * 178.53858 * 10 9 7 12 12 O 1.42094 * 106.39985 * 311.46320 * 10 9 7 13 13 N 1.65604 * 107.21530 * 64.99966 * 10 9 7 14 14 C 1.46500 * 119.99778 * 269.99683 * 13 10 9 15 15 C 1.46497 * 119.99994 * 90.00438 * 13 10 9 16 16 C 1.50699 * 109.47459 * 94.99549 * 15 13 10 17 17 H 1.08000 * 119.99687 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00136 * 179.97438 * 16 15 13 19 19 N 1.31509 * 119.99768 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99876 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47213 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46931 * 120.00019 * 20 18 16 23 23 H 1.48495 * 109.46922 * 240.00313 * 20 18 16 24 24 H 1.09004 * 109.47399 * 297.74876 * 1 2 3 25 25 H 1.09003 * 109.47628 * 57.74856 * 1 2 3 26 26 H 1.08996 * 109.47073 * 177.74864 * 1 2 3 27 27 H 1.08998 * 110.36510 * 159.34030 * 5 4 2 28 28 H 1.08999 * 110.37302 * 281.56747 * 5 4 2 29 29 H 1.08998 * 110.51202 * 217.37593 * 6 5 4 30 30 H 1.08997 * 110.51359 * 94.66389 * 6 5 4 31 31 H 0.96999 * 119.99733 * 326.90165 * 9 7 2 32 32 H 1.09005 * 109.46942 * 90.00568 * 14 13 10 33 33 H 1.08995 * 109.46968 * 210.00097 * 14 13 10 34 34 H 1.08997 * 109.47662 * 330.00760 * 14 13 10 35 35 H 1.08998 * 109.46797 * 214.99793 * 15 13 10 36 36 H 1.09004 * 109.47022 * 334.99270 * 15 13 10 37 37 H 0.97009 * 119.99472 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0349 -0.7232 -1.1436 5 6 3.3898 -1.0845 -0.7974 6 6 3.3194 -1.5027 0.6880 7 6 2.0678 -0.7728 1.2247 8 1 1.3283 -1.4917 1.5775 9 7 2.4321 0.1555 2.2979 10 16 2.2464 -0.2948 3.8807 11 8 2.7133 0.7942 4.6651 12 8 0.9345 -0.8287 3.9947 13 7 3.2885 -1.5516 4.1583 14 6 2.8464 -2.9313 3.9408 15 6 4.6522 -1.2838 4.6214 16 6 4.7012 -1.3835 6.1243 17 1 3.8060 -1.6229 6.6789 18 6 5.8890 -1.1701 6.7910 19 7 6.9791 -0.8791 6.1155 20 14 5.9497 -1.2945 8.6539 21 1 4.5995 -1.6321 9.1718 22 1 6.9102 -2.3563 9.0480 23 1 6.3878 0.0053 9.2227 24 1 -0.3634 0.4785 0.9095 25 1 -0.3634 0.5484 -0.8691 26 1 -0.3633 -1.0268 -0.0404 27 1 3.7283 -1.9193 -1.4110 28 1 4.0540 -0.2292 -0.9215 29 1 4.2115 -1.1727 1.2203 30 1 3.1988 -2.5824 0.7756 31 1 2.7821 1.0338 2.0814 32 1 3.0578 -3.2226 2.9119 33 1 3.3779 -3.5949 4.6228 34 1 1.7746 -3.0029 4.1257 35 1 5.3338 -2.0147 4.1863 36 1 4.9501 -0.2813 4.3138 37 1 7.8147 -0.7286 6.5847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121571320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:55 Heat of formation + Delta-G solvation = -149.502901 kcal Electronic energy + Delta-G solvation = -21134.722342 eV Core-core repulsion = 17844.806014 eV Total energy + Delta-G solvation = -3289.916328 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.66986 -38.28849 -37.21952 -36.86862 -35.88839 -34.50096 -32.45406 -31.17657 -29.65499 -26.79231 -26.31928 -24.21084 -23.15368 -22.09695 -20.42809 -19.01302 -18.44596 -18.31211 -17.82007 -16.97323 -16.69263 -16.51293 -16.23805 -15.34178 -15.01084 -14.94915 -14.58363 -14.10237 -13.96317 -13.93570 -13.39912 -13.33581 -13.22549 -13.16190 -13.02764 -12.93866 -12.90182 -12.47035 -12.38525 -12.31567 -12.11186 -11.96035 -11.76660 -11.70423 -10.81502 -10.60601 -10.46732 -9.77800 -8.20801 -6.32013 -0.34306 1.38359 1.41089 1.52316 1.98731 2.40060 2.59688 2.94458 3.10679 3.39759 3.59506 3.67287 3.92915 4.06073 4.16078 4.22761 4.35721 4.43710 4.66414 4.70917 4.75615 4.83036 4.91541 5.01661 5.05280 5.12305 5.13428 5.21615 5.26833 5.47113 5.69905 5.81652 5.87870 6.08493 6.13785 6.76714 7.37065 8.86761 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.005350 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.951862 B = 5232.869086 C = 5616.322484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 H 0.084 0.916 4 O -0.382 6.382 5 C 0.047 3.953 6 C -0.178 4.178 7 C 0.117 3.883 8 H 0.104 0.896 9 N -1.109 6.109 10 S 2.799 3.201 11 O -1.010 7.010 12 O -1.007 7.007 13 N -0.999 5.999 14 C 0.087 3.913 15 C 0.274 3.726 16 C -0.549 4.549 17 H 0.051 0.949 18 C 0.013 3.987 19 N -0.923 5.923 20 Si 0.955 3.045 21 H -0.271 1.271 22 H -0.270 1.270 23 H -0.280 1.280 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.423 0.577 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.017 0.983 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.313 -1.507 -14.339 16.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.011 3.989 3 H 0.102 0.898 4 O -0.301 6.301 5 C -0.029 4.029 6 C -0.217 4.217 7 C 0.009 3.991 8 H 0.122 0.878 9 N -0.871 5.871 10 S 2.807 3.193 11 O -0.994 6.994 12 O -0.990 6.990 13 N -0.841 5.841 14 C -0.059 4.059 15 C 0.150 3.850 16 C -0.588 4.588 17 H 0.069 0.931 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.780 3.220 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.206 1.206 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.128 0.872 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.258 0.742 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.035 0.965 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.927 -1.331 -13.844 16.526 hybrid contribution 0.973 0.340 1.026 1.455 sum -7.954 -0.991 -12.818 15.118 Atomic orbital electron populations 1.21850 0.91918 1.03614 1.03264 1.23252 0.96370 0.95769 0.83490 0.89791 1.89139 1.28156 1.74836 1.38006 1.23496 0.83862 1.01094 0.94492 1.23544 0.98551 1.02420 0.97220 1.22348 0.97014 0.91423 0.88340 0.87793 1.55850 1.81589 1.26150 1.23487 1.01203 0.72671 0.72464 0.72999 1.93582 1.82222 1.55127 1.68429 1.93506 1.38326 1.80484 1.86707 1.57423 1.26632 1.19180 1.80891 1.21611 1.00206 0.81885 1.02182 1.18591 0.77464 0.95788 0.93119 1.21885 0.95141 1.47961 0.93843 0.93114 1.25703 0.95220 0.94603 1.03091 1.70005 1.00429 1.48597 1.37315 0.85562 0.78294 0.78009 0.80172 1.19533 1.19527 1.20573 0.90781 0.90545 0.91395 0.87156 0.91415 0.89835 0.88605 0.74159 0.90828 0.91092 0.90796 0.95109 0.96488 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.52 71.98 0.69 -2.04 16 2 C 0.07 1.42 3.64 31.09 0.11 1.54 16 3 H 0.08 1.54 7.84 -2.39 -0.02 1.52 16 4 O -0.38 -8.18 11.35 -148.98 -1.69 -9.87 16 5 C 0.05 0.84 7.63 72.48 0.55 1.39 16 6 C -0.18 -3.62 6.65 31.61 0.21 -3.41 16 7 C 0.12 2.66 3.34 46.01 0.15 2.82 16 8 H 0.10 2.42 7.30 -2.39 -0.02 2.40 16 9 N -1.11 -29.97 5.54 -165.16 -0.91 -30.89 16 10 S 2.80 105.78 6.08 -56.49 -0.34 105.44 16 11 O -1.01 -47.77 17.11 -128.00 -2.19 -49.96 16 12 O -1.01 -39.52 16.12 -128.00 -2.06 -41.58 16 13 N -1.00 -39.30 3.23 -543.23 -1.75 -41.05 16 14 C 0.09 2.72 10.68 127.77 1.36 4.09 16 15 C 0.27 13.43 5.08 85.63 0.43 13.86 16 16 C -0.55 -30.67 9.38 25.60 0.24 -30.43 16 17 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 18 C 0.01 0.75 5.46 84.66 0.46 1.21 16 19 N -0.92 -53.42 13.29 21.45 0.28 -53.13 16 20 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.91 7.97 -2.39 -0.02 1.89 16 30 H 0.10 1.72 7.57 -2.39 -0.02 1.70 16 31 H 0.42 9.90 8.64 -96.74 -0.84 9.07 16 32 H 0.07 1.78 7.33 -2.38 -0.02 1.77 16 33 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 34 H 0.07 2.20 7.02 -2.39 -0.02 2.19 16 35 H 0.03 1.52 8.11 -2.39 -0.02 1.50 16 36 H 0.02 0.90 7.61 -2.38 -0.02 0.88 16 37 H 0.27 14.51 8.31 -92.70 -0.77 13.73 16 Total: -1.00 -70.28 319.24 -2.20 -72.48 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.23 Total: 13.18 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 4.22 Total: -10.98 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -2.38 Total: -125.07 kcal Atomic # 8 Polarization: -95.47 SS G_CDS: -5.94 Total: -101.41 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 105.78 SS G_CDS: -0.34 Total: 105.44 kcal Total: -70.28 -2.20 -72.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121571320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.024 kcal (2) G-P(sol) polarization free energy of solvation -70.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds